Related genomes of genome LACLS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LACLS - Lactococcus lactis subsp. cremoris (strain SK11)

Proteome version: 04-NOV-2006 (Rel. 89, Last updated, Version 3) with 2436 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACLN	Lactococcus lactis subsp. cremoris (strain NZ9000)	1802
2	LACLM	Lactococcus lactis subsp. cremoris (strain MG1363)	1794
3	LACLK	Lactococcus lactis subsp. lactis (strain KF147)	1649
4	LACLV	Lactococcus lactis subsp. lactis (strain CV56)	1619
5	LACLA	Lactococcus lactis subsp. lactis (strain IL1403)	1590
6	LACGT	Lactococcus garvieae (strain ATCC 49156 / DSM 6783 / JCM 8735 / NCIMB 13208 / YT-3)	1206
7	LACGL	Lactococcus garvieae (strain Lg2)	1203
8	ENTF6	Enterococcus faecalis (strain 62)	1006
9	ENTFA	Enterococcus faecalis (strain ATCC 700802 / V583)	975
10	ENTFU	Enterococcus faecium (strain Aus0004)	967

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	4
2	VITCO	Vittaforma corneae (strain ATCC 50505)	12
3	ENTBH	Enterocytozoon bieneusi (strain H348)	12
4	TRAHO	Trachipleistophora hominis	14
5	EDHAE	Edhazardia aedis (strain USNM 41457)	15
6	NEMP3	Nematocida parisii (strain ERTm3)	18
7	TRYCI	Trypanosoma congolense (strain IL3000)	18
8	SPRLO	Spraguea lophii (strain 42_110)	19
9	VAVCU	Vavraia culicis (isolate floridensis)	20
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20