Related genomes of genome KORCO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

KORCO - Korarchaeum cryptofilum (strain OPF8)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 3) with 1602 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PYROT	Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7)	499
2	THEPD	Thermofilum pendens (strain DSM 2475 / Hrk 5)	498
3	THELN	Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)	491
4	PYRAR	Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321 / PZ6)	489
5	PYRAB	Pyrococcus abyssi (strain GE5 / Orsay)	488
6	PYRCJ	Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)	487
7	VULDI	Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)	482
8	PYRFU	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	481
9	PYRSN	Pyrococcus sp. (strain NA2)	480
10	VULM7	Vulcanisaeta moutnovskia (strain 768-28)	479

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	15
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	19
3	UC087	Candidatus Pacebacteria bacterium LF-bin-483	19
4	ZINIC	Zinderia insecticola (strain CARI)	19
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	23
6	UC116	Patescibacteria group bacterium E44_bin74	23
7	TRYCI	Trypanosoma congolense (strain IL3000)	24
8	MYCSL	Mycoplasma suis (strain Illinois)	24
9	MYCS3	Mycoplasma suis (strain KI_3806)	26
10	MYCHA	Mycoplasma haemolamae (strain Purdue)	27