Related genomes of genome HYDS0 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HYDS0 - Hydrogenobaculum sp. (strain Y04AAS1)

Proteome version: 14-OCT-2008 (Rel. 97, Last updated, Version 1) with 1626 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	HYDTT	Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)	852
2	THEAH	Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12)	843
3	AQUAE	Aquifex aeolicus (strain VF5)	773
4	SULAA	Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825)	729
5	SULSY	Sulfurihydrogenibium sp. (strain YO3AOP1)	723
6	PERMH	Persephonella marina (strain DSM 14350 / EX-H1)	696
7	THEA1	Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1)	547
8	DESTD	Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA)	523
9	CITBB	Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)	521
10	GEOUR	Geotalea uraniireducens (strain Rf4)	518

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	4
2	ENTBH	Enterocytozoon bieneusi (strain H348)	12
3	TRYCI	Trypanosoma congolense (strain IL3000)	13
4	VITCO	Vittaforma corneae (strain ATCC 50505)	14
5	TRAHO	Trachipleistophora hominis	17
6	EDHAE	Edhazardia aedis (strain USNM 41457)	18
7	NEMP3	Nematocida parisii (strain ERTm3)	19
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	20
10	MEGSC	Megaselia scalaris	23