Related genomes of genome GEOMG based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

GEOMG - Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)

Proteome version: 30-JAN-2014 (Rel. 119, Last updated, Version 7) with 3502 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	2081
2	GEOUR	Geotalea uraniireducens (strain Rf4)	2029
3	GEOSL	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	2028
4	GEODF	Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)	2005
5	GEOSM	Geobacter sp. (strain M21)	1976
6	CITBB	Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)	1964
7	GEOS8	Geobacter sp. (strain M18)	1933
8	TRIL1	Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)	1602
9	PELPD	Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1)	1460
10	SYNC1	Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1)	1166

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	7
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	VITCO	Vittaforma corneae (strain ATCC 50505)	18
4	EDHAE	Edhazardia aedis (strain USNM 41457)	20
5	TRYCI	Trypanosoma congolense (strain IL3000)	21
6	NEMP3	Nematocida parisii (strain ERTm3)	23
7	TRAHO	Trachipleistophora hominis	25
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	27
10	SPRLO	Spraguea lophii (strain 42_110)	28