Related genomes of genome DEHM1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DEHM1 - Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195)

Proteome version: 15-MAY-2014 (Rel. 120, Last updated, Version 7) with 1502 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DEHMC	Dehalococcoides mccartyi (strain CBDB1)	1102
2	DEHMV	Dehalococcoides mccartyi (strain VS)	1093
3	DEHMB	Dehalococcoides mccartyi (strain ATCC BAA-2100 / JCM 16839 / KCTC 5957 / BAV1)	1068
4	DEHMG	Dehalococcoides mccartyi (strain GT)	1040
5	DEHLB	Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9)	748
6	DESRL	Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL)	503
7	DESHY	Desulfitobacterium hafniense (strain Y51)	497
8	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	495
9	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	492
10	DESAL	Desulfatibacillum aliphaticivorans	491

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	13
2	RALSL	Ralstonia solanacearum	14
3	VITCO	Vittaforma corneae (strain ATCC 50505)	15
4	ENTBH	Enterocytozoon bieneusi (strain H348)	15
5	NEMP3	Nematocida parisii (strain ERTm3)	18
6	TRAHO	Trachipleistophora hominis	18
7	EDHAE	Edhazardia aedis (strain USNM 41457)	19
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
9	MEGSC	Megaselia scalaris	21
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	23