Related genomes of genome DANRE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DANRE - Danio rerio

Proteome version: Ensembl 106; GRCz11; GCA_000002035.4 with 30313 genes / 52089 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SINGR	Sinocyclocheilus grahami	19053
2	SALTR	Salmo trutta	18059
3	SALSA	Salmo salar	17091
4	PYGNA	Pygocentrus nattereri	16072
5	ICTPU	Ictalurus punctatus	14848
6	ANGAN	Anguilla anguilla	14097
7	ASTCA	Astatotilapia calliptera	14075
8	ANATE	Anabas testudineus	14069
9	ORENI	Oreochromis niloticus	13949
10	SERDU	Seriola dumerili	13905

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	32
2	UC116	Patescibacteria group bacterium E44_bin74	39
3	ZINIC	Zinderia insecticola (strain CARI)	44
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	47
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	47
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	50
7	TRYVY	Trypanosoma vivax (strain Y486)	50
8	MYCS3	Mycoplasma suis (strain KI_3806)	52
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	54
10	MYCSL	Mycoplasma suis (strain Illinois)	54