Related genomes of genome CYAM1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CYAM1 - Cyanidioschyzon merolae (strain 10D)

Proteome version: Ensembl Plants 39; ASM9120v1 with 4998 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CYAME	Cyanidioschyzon merolae	4907
2	WHEAT	Triticum aestivum	1718
3	BRANA	Brassica napus	1625
4	GALSU	Galdieria sulphuraria	1582
5	GOSHI	Gossypium hirsutum	1532
6	TOBAC	Nicotiana tabacum	1515
7	SOYBN	Glycine max	1498
8	MISSI	Miscanthus sinensis	1412
9	POPTR	Populus trichocarpa	1387
10	ACTCC	Actinidia chinensis var. chinensis	1353

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	13
2	TRYVY	Trypanosoma vivax (strain Y486)	23
3	UC116	Patescibacteria group bacterium E44_bin74	50
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	51
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	51
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	54
7	MYCS3	Mycoplasma suis (strain KI_3806)	57
8	UC127	Candidatus Micrarchaeota archaeon B47_G15	58
9	ZINIC	Zinderia insecticola (strain CARI)	59
10	MYCSL	Mycoplasma suis (strain Illinois)	60