Related genomes of genome BURPS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BURPS - Burkholderia pseudomallei (strain K96243)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 101) with 5838 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BURP0	Burkholderia pseudomallei (strain 1106a)	5201
2	BURP6	Burkholderia pseudomallei (strain 668)	5101
3	BURP1	Burkholderia pseudomallei (strain 1710b)	4892
4	BURTA	Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264)	4284
5	BURM7	Burkholderia mallei (strain NCTC 10247)	4235
6	BURM9	Burkholderia mallei (strain NCTC 10229)	4163
7	BURMA	Burkholderia mallei (strain ATCC 23344)	3995
8	BURMS	Burkholderia mallei (strain SAVP1)	3813
9	BURCC	Burkholderia cenocepacia (strain MC0-3)	3740
10	BURL3	Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)	3672

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	5
2	ENTBH	Enterocytozoon bieneusi (strain H348)	25
3	VITCO	Vittaforma corneae (strain ATCC 50505)	26
4	EDHAE	Edhazardia aedis (strain USNM 41457)	27
5	TRAHO	Trachipleistophora hominis	30
6	NEMP3	Nematocida parisii (strain ERTm3)	32
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	32
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	33
9	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	34
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	36