Related genomes of genome BRUMA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BRUMA - Brugia malayi

Proteome version: Ensembl Metazoa 21; B_malayi-3; 29-NOV-2013 with 13667 genes / 14312 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ONCVO	Onchocerca volvulus	5937
2	LOALO	Loa loa	5891
3	WUCBA	Wuchereria bancrofti	5266
4	THECL	Thelazia callipaeda	4724
5	HAECO	Haemonchus contortus	3787
6	CAEEL	Caenorhabditis elegans	3742
7	TOXCA	Toxocara canis	3595
8	CAERE	Caenorhabditis remanei	3548
9	CAEBR	Caenorhabditis briggsae	3434
10	CAEBE	Caenorhabditis brenneri	3197

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	8
2	TRYVY	Trypanosoma vivax (strain Y486)	23
3	UC116	Patescibacteria group bacterium E44_bin74	24
4	ZINIC	Zinderia insecticola (strain CARI)	26
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	27
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	29
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	29
8	UC105	Patescibacteria group bacterium Baikal-deep-G193	30
9	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	30
10	MYCHA	Mycoplasma haemolamae (strain Purdue)	31