Related genomes of genome BRALA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BRALA - Branchiostoma lanceolatum

Proteome version: Ensembl Metazoa 44; BraLan2; GCA_900088365.1 with 35949 genes / 35997 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BRAFL	Branchiostoma floridae	11659
2	SALTR	Salmo trutta	4655
3	SALSA	Salmo salar	4513
4	SINGR	Sinocyclocheilus grahami	4229
5	PATMI	Patiria miniata	4168
6	STRPU	Strongylocentrotus purpuratus	4115
7	CAPI1	Capitella sp. 1	4113
8	CAPTE	Capitella teleta	4113
9	LYTVA	Lytechinus variegatus	4082
10	XENLA	Xenopus laevis	3892

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	25
2	ZINIC	Zinderia insecticola (strain CARI)	25
3	MYCHA	Mycoplasma haemolamae (strain Purdue)	26
4	RALSL	Ralstonia solanacearum	28
5	UC116	Patescibacteria group bacterium E44_bin74	29
6	MYCS3	Mycoplasma suis (strain KI_3806)	30
7	MYCSL	Mycoplasma suis (strain Illinois)	30
8	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	33
9	UC087	Candidatus Pacebacteria bacterium LF-bin-483	34
10	UC127	Candidatus Micrarchaeota archaeon B47_G15	34