Related genomes of genome ANAPL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ANAPL - Anas platyrhynchos

Proteome version: Ensembl 73; BGI_duck_1.0; 24-AUG-2013 with 15515 genes / 15753 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TYTAL	Tyto alba	10054
2	CHICK	Gallus gallus	10030
3	FICAL	Ficedula albicollis	9919
4	HALLE	Haliaeetus leucocephalus	9912
5	HUMAN	Homo sapiens	9458
6	MOUSE	Mus musculus	9453
7	CHRPI	Chrysemys picta bellii	9450
8	PHACC	Phasianus colchicus	9368
9	STRHB	Strigops habroptila	9350
10	CERSS	Ceratotherium simum simum	9345

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	20
2	MYCHA	Mycoplasma haemolamae (strain Purdue)	26
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	29
4	TRYVY	Trypanosoma vivax (strain Y486)	29
5	UC116	Patescibacteria group bacterium E44_bin74	30
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	32
7	ZINIC	Zinderia insecticola (strain CARI)	33
8	MYCS3	Mycoplasma suis (strain KI_3806)	36
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	36
10	MYCHI	Mycoplasma haemofelis (strain Ohio2)	38