Related genomes of genome ALTAL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ALTAL - Alternaria alternata

Proteome version: Ensembl Fungi 48; Altal1 with 13466 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	COCLU	Cochliobolus lunatus	7966
2	COCSN	Cochliobolus sativus (strain ND90Pr / ATCC 201652)	7957
3	COCH5	Cochliobolus heterostrophus (strain C5 / ATCC 48332 / race O)	7820
4	PHANO	Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)	7630
5	PYRTR	Pyrenophora tritici-repentis (strain Pt-1C-BFP)	7508
6	EPING	Epicoccum nigrum	7172
7	PHAND	Phaeosphaeria nodorum	7009
8	LEPMJ	Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8)	6020
9	PESFW	Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)	5707
10	FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	5631

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	29
2	UC116	Patescibacteria group bacterium E44_bin74	30
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	38
4	ZINIC	Zinderia insecticola (strain CARI)	41
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	41
6	RALSL	Ralstonia solanacearum	43
7	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	45
8	UC105	Patescibacteria group bacterium Baikal-deep-G193	48
9	MYCSL	Mycoplasma suis (strain Illinois)	49
10	ONYPE	Onion yellows phytoplasma (strain OY-M)	49