Related genomes of genome AJEC8 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

AJEC8 - Ajellomyces capsulatus (strain H88)

Proteome version: Ensembl Fungi 48; ASM15100v2 with 9445 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AJECH	Ajellomyces capsulatus (strain H143)	6694
2	AJEDR	Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586)	5201
3	PARBA	Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01)	5064
4	PARBD	Paracoccidioides brasiliensis (strain Pb18)	5054
5	COCIM	Coccidioides immitis (strain RS)	4885
6	COCPS	Coccidioides posadasii (strain RMSCC 757 / Silveira)	4691
7	ARTGP	Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893)	4647
8	ASPCI	Aspergillus calidoustus	4597
9	NEOFI	Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)	4596
10	ARTOC	Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)	4592

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	28
2	TRYVY	Trypanosoma vivax (strain Y486)	29
3	RALSL	Ralstonia solanacearum	30
4	ZINIC	Zinderia insecticola (strain CARI)	36
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	37
6	MYCHA	Mycoplasma haemolamae (strain Purdue)	39
7	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	41
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	41
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	41
10	UC087	Candidatus Pacebacteria bacterium LF-bin-483	43