| Taxon | Protein ID | Cross reference | Function annotation |
|---|
| EDrosophila elegans | DROEL12964 |  DELE012972-PA | DELE012972-PA |
| EDrosophila eugracilis | DROEU13552 | DEUG013563-PA | DEUG013563-PA |
| ECapitella sp. 1 | CAPI125881 | 136603 | jgi|Capca1|136603|e_gw1.45812.1.1 |
| ECapitella teleta | CAPTE00018 |  R7TWQ2 | |
| ETrichoplax adhaerens | TRIAD00374 | B3RRW0 | jgi|Triad1|54386|fgeneshTA2_pg.C_scaffold_3000393  |
| ECapsaspora owczarzaki (strain ATCC 30864) | CAPO300210 |  EFW39685.1 | diaminopimelate epimerase |
| ETetrahymena thermophila (strain SB210) | TETTS20838 | I7MJ90 | diaminopimelate epimerase family protein |
| EDictyostelium discoideum | DICDI10377 | Q54HH7 | |
| EDictyostelium purpureum | DICPU07917 | F0ZTS0 | jgi|Dicpu1|155352|GID1.0046006 |
| EPolysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) | POLPP00368 | D3B0A2 | - |
| EGuillardia theta | GUITH14855 | L1JAY7 | hypothetical protein |
| EEmiliania huxleyi | EMIHU24741 | R1DSX7 | jgi|Emihu1|212438|gm1.5200216 |
| EBigelowiella natans (strain CCMP2755) | BIGNC11795 | JGI_V11_39796 | |
| ECyanidioschyzon merolae | CYAME02212 | CMQ230CT | |
| EGaldieria sulphuraria | GALSU05885 | M2Y8W8 | diaminopimelate epimerase |
| EChondrus crispus | CHOCR02583 | R7QGK7 | |
| EPhaeodactylum tricornutum (strain CCAP 1055/1) | PHATC08183 | B7FV89 | Predicted protein {ECO:0000313|EMBL:EEC49795.1} [Source:UniProtKB/TrEMBL;Acc:B7FV89] |
| EThalassiosira pseudonana | THAPS01591 | B8LBN1 | Diaminopimelate epimerase [Source:UniProtKB/TrEMBL;Acc:B8LBN1] |
| ESaprolegnia parasitica (strain CBS 223.65) | SAPPC03040 | A0A067BLK9 | diaminopimelate epimerase |
| EEctocarpus siliculosus | ECTSI07016 | D7G034 | diaminopimelate epimerase Subcellular localisation: other localisation annotator: Jonas Collen (Roscoff) |
| EAureococcus anophagefferens | AURAN10000 | F0Y737 | hypothetical protein |
| EChlamydomonas reinhardtii | CHLRE09585 | PACid:19868051 | diaminopimelate epimerase family protein |
| EVolvox carteri | VOLCA14235 | D8UIZ0 | hypothetical protein predicted protein |
| EChlorella variabilis | CHLVA07677 | E1ZNM7 | hypothetical protein similar to Diaminopimelate epimerase, putative, expressed; expressed; GO_function: GO:8837 - diaminopimelate epimerase activity; GO_process: GO:9089 - lysine biosynthesis via diaminopimelate |
| EOstreococcus lucimarinus (strain CCE9901) | OSTLU01352 | A4RTF7 | predicted protein go_function: diaminopimelate epimerase activity; go_process: lysine biosynthesis via diaminopimelate |
| EOstreococcus tauri | OSTTA01162 | Q01DU1 | Homology to unknown gene |
| EMicromonas commoda (strain RCC299 / NOUM17 / CCMP2709) | MICCC03582 | C1E847 | predicted protein; GO_function: GO:8837 - diaminopimelate epimerase activity; GO_process: GO:9089 - lysine biosynthetic process via diaminopimelate |
| EKlebsormidium flaccidum | KLEFL02793 | A0A1Y1ID46 | diaminopimelate epimerase prediction v1.10 kfl00463_0070 |
| EPhyscomitrella patens subsp. patens | PHYPA22937 | PP1S51_241V6.1 | |
| EOryza brachyantha | ORYBR09142 | J3NE99 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:J3NE99] |
| EOryza glaberrima | ORYGL08551 | ORGLA12G0141500.1 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:I1R7A9] |
| EOryza longistaminata | ORYLO20251 | KN539075.1_FGP009 | |
| EOryza nivara | ORYNI11550 | A0A0E0JBB8 | |
| EOryza punctata | ORYPU09794 | A0A0E0MNQ5 | |
| EOryza rufipogon | ORYRU11787 | A0A0E0RIW2 | |
| EOryza sativa subsp. indica | ORYSI11222 |  DAPF_ORYSI | Putative diaminopimelate epimerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2ZLS4] |
| EBrachypodium distachyon | BRADI20101 | I1IHA9 | |
| EHordeum vulgare var. distichon | HORVD17960 | MLOC_10186.1 | |
| EAegilops tauschii | AEGTA10856 | M8CEL1 | Putative diaminopimelate epimerase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:M8CEL1] |
| ETriticum aestivum | WHEAT102222 | A0A1D5YV00 | - |
| ETriticum urartu | TRIUA20074 | M7ZST9 | Diaminopimelate epimerase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:M7ZST9] |
| EEragrostis tef | ERATE36173 | maker-scaffold4758-snap-gene-0.11-mRNA-1 | maker-scaffold4758-snap-gene-0.11-mRNA-1 protein AED:0.123521383075523 eAED:0.123521383075523 QI:65|0.9|0.90|1|0.6|0.72|11|435|384 |
| ESorghum bicolor | SORBI11102 | 4845838 | jgi|Sorbi1|4845838|e_gw1.8.13587.1 |
| EZea mays | MAIZE16578 | B4FVI8 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B4FVI8] |
| EMusa acuminata | MUSAC30340 | GSMUA_Achr8P02650_001 | Diaminopimelate epimerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G02650_001] |
| EMusa acuminata subsp. malaccensis | MUSAM27238 | M0TM17 | Diaminopimelate epimerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G02650_001] |
| ESolanum lycopersicum | SOLLC31273 | K4CQ60 | |
| EGlycine max | SOYBN29232 | C6T990 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:C6T990] |
| EManihot esculenta | MANES19383 | A0A199UD86 | diaminopimelate epimerase family protein |
| EPopulus trichocarpa | POPTR34810 | B9HCY9 | Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9HCY9] |
| EPrunus persica | PRUPE17163 | M5VZR0 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M5VZR0] |
| EArabis alpina | ARAAL10922 | A0A087GXK7 | hypothetical protein; diaminopimelate epimerase |
| EBrassica rapa subsp. pekinensis | BRARP34659 | M4CS21 | - |
| EBrassica napus | BRANA33396 | BnaA09g33840D | |
| EArabidopsis thaliana | ARATH13004 | DAPF_ARATH | diaminopimelate epimerase family protein [Source:TAIR_LOCUS;Acc:AT3G53580] |
| ETheobroma cacao | THECC16546 | A0A061ET97 | Diaminopimelate epimerase family protein isoform 1 |
| EGossypium hirsutum | GOSHI35221 | Gh_D04G1146 | |
| EVitis vinifera | VITVI17299 | GSVIVT01025612001 | Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x [source:Uniprot/SPTREMBL;Acc:D7TQF7_VITVI] |
| EAmborella trichopoda | AMBTC03299 | W1PEA8 | hypothetical protein |
| ESelaginella moellendorffii | SELML24031 | D8RCD1 | Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D8RCD1] |
| ACrenarchaeota archaeon SCGC AAA471-B05 | CREAS00979 | WP_018193824.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. hypothetical protein |
| AArchaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) | ARCFU00730 | DAPF_ARCFU | Diaminopimelate epimerase |
| AArchaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) | ARCPA00257 | D2RGB0 | Diaminopimelate epimerase |
| AArchaeoglobus veneficus (strain DSM 11195 / SNP6) | ARCVS00869 | F2KSG1 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: afu:AF0747 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| AFerroglobus placidus (strain DSM 10642 / AEDII12DO) | FERPA02018 | D3S0G1 | Diaminopimelate epimerase |
| AHalalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) | HALJB02748 | D8J895 | Diaminopimelate epimerase |
| AHaloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) | HALMT01075 | I3R3L1 | diaminopimelate epimerase (DAP epimerase) |
| AHaloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) | HALVD01072 | D4GW20 | |
| AHalogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) | HALBP02232 | E4NQH4 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| AHaloquadratum walsbyi (strain DSM 16790 / HBSQ001) | HALWD00525 | Q18K13 | diaminopimelate epimerase (DAP epimerase) |
| AHaloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) | HALWC00567 | G0LGK0 | diaminopimelate epimerase |
| AHalorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) | HALLT00663 | B9LUB6 | Diaminopimelate epimerase |
| AHaloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) | HALTV00785 | D2RX74 | Diaminopimelate epimerase |
| ANatrinema pellirubrum (strain DSM 15624 / CIP 106293 / JCM 10476 / NCIMB 786 / 157) | NATP103014 | L0JQV6 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| ANatrinema sp. (strain J7-2) | NATSJ03994 | I7C1J4 | diaminopimelate epimerase |
| AMethanobacterium lacus (strain AL-21) | METLA00118 | F0T7E2 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: mth:MTH1334 diaminopimelate epimerase |
| AMethanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1) | METPW02351 | F6D6G9 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: mth:MTH1334 diaminopimelate epimerase |
| AMethanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / OCM 146 / M1) | METRM00152 | D3DYT5 | Diaminopimelate epimerase |
| AMethanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) | METS301361 | A5UMZ9 | Diaminopimelate epimerase, DapF |
| AMethanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) | METST01524 | Q2NE08 | DapF putative diaminopimelate epimerase; COG0253, pfam01678 |
| AMethanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) | METTM01671 | D9PYI7 | Diaminopimelate epimerase |
| AMethanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) | METTH01300 | DAPF_METTH | Diaminopimelate epimerase |
| AMethanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) | METFV00994 | E3GW34 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: mth:MTH1334 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: O27389 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| AMethanocaldococcus fervens (strain DSM 4213 / JCM 15782 / AG86) | METFA00293 | C7P6F3 | Diaminopimelate epimerase |
| AMethanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) | METIM00229 | D5VQQ0 | Diaminopimelate epimerase |
| AMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) | METJA01145 | DAPF_METJA | Diaminopimelate epimerase |
| AMethanocaldococcus sp. (strain FS406-22) | METSF00045 | D3S6T6 | Diaminopimelate epimerase |
| AMethanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) | METVM00912 | C9RGT5 | Diaminopimelate epimerase |
| AMethanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) | METIK00082 | F6BEI4 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: mfe:Mefer_0299 diaminopimelate epimerase |
| AMethanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3) | META300203 | DAPF_META3 | Diaminopimelate epimerase |
| AMethanococcus maripaludis | METMI01033 | G0H045 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| AMethanococcus maripaludis (strain C5 / ATCC BAA-1333) | METM500716 | DAPF_METM5 | Diaminopimelate epimerase |
| AMethanococcus maripaludis (strain C6 / ATCC BAA-1332) | METM601723 | DAPF_METM6 | Diaminopimelate epimerase |
| AMethanococcus maripaludis (strain C7 / ATCC BAA-1331) | METM700161 | DAPF_METM7 | Diaminopimelate epimerase |
| AMethanococcus maripaludis (strain S2 / LL) | METMP00917 | DAPF_METMP | Diaminopimelate epimerase |
| AMethanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB) | METVS00004 | A6UN47 | Diaminopimelate epimerase |
| AMethanococcus voltae (strain ATCC BAA-1334 / A3) | METV300876 | D7DTY6 | Diaminopimelate epimerase |
| AMethanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) | METOI00130 | F8AN04 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: mja:MJ_1119 diaminopimelate epimerase |
| AMethanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) | METAR01110 | DAPF_METAR | diaminopimelate epimerase |
| AMethanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) | METCZ01385 | H8I4I3 | diaminopimelate epimerase IMG term: diaminopimelate epimerase (EC 5.1.1.7) |
| AMethanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) | METPS00854 | D1YWV8 | Diaminopimelate epimerase |
| AMethanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) | METLZ00556 | A2SQX8 | Hypothetical protein |
| AMethanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) | METBM01324 | I7LJS2 | diaminopimelate epimerase Diaminopimelate epimerase, DapF; High confidence in function and specificity |
| AMethanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) | METMJ02133 | A3CXI3 | Diaminopimelate epimerase |
| AMethanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847) | METP401869 | E1RIR0 | Diaminopimelate epimerase |
| AMethanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8) | METB602421 | A7IB34 | Diaminopimelate epimerase |
| AMethanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) | METFS00212 | L0HBB6 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| AMethanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) | METPE00247 | B8GJ70 | Diaminopimelate epimerase |
| AMethanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) | METHJ02202 | Q2FSY3 | diaminopimelate epimerase |
| AMethanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) | METCG00349 | F4BWH0 | diaminopimelate epimerase GO_function: GO:0008837 - diaminopimelate epimerase activity; GO_function: GO:0009089 - lysine biosynthetic process via diaminopimelate |
| AMethanosaeta harundinacea (strain 6Ac) | METH601822 | G7WQ35 | Diaminopimelate epimerase |
| AMethanosaeta thermophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) | METTP00438 | DAPF_METTP | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mhu:Mhun_2316 diaminopimelate epimerase |
| AMethanohalobium evestigatum (strain ATCC BAA-1072 / DSM 3721 / NBRC 107634 / OCM 161 / Z-7303) | METEZ00464 | D7E856 | Diaminopimelate epimerase |
| AMethanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) | METZD01430 | F7XNV8 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: mpd:MCP_0858 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: A0B6C1 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| AMethanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) | METKA00434 | DAPF_METKA | Diaminopimelate epimerase |
| AMethanomethylophilus alvus (strain Mx1201) | METAX01466 | M9SJF9 | - |
| AMethanomassiliicoccus intestinalis (strain Issoire-Mx1) | METII00220 | R9T424 | - |
| AThermoplasmatales archaeon (strain BRNA1) | THEXX01364 | M4YMG1 | - |
| BAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) | ACIC503186 | C1F6C9 | Diaminopimelate epimerase |
| BKoribacter versatilis (strain Ellin345) | KORVE02616 | Q1INC7 | Diaminopimelate epimerase |
| BGranulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) | GRAMM02101 | G8NUL9 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: aca:ACP_3361 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BGranulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9) | GRATM02732 | E8WYD5 | diaminopimelate epimerase KEGG: aca:ACP_3361 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BTerriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) | TERRK03318 | I3ZL66 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) | TERSS00704 | E8V5L3 | diaminopimelate epimerase KEGG: aca:ACP_3361 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BChloracidobacterium thermophilum (strain B) | CHLTF00329 | G2LE47 | diaminopimelate epimerase |
| BSolibacter usitatus (strain Ellin6076) | SOLUE04498 | Q01XQ8 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: aba:Acid345_2622 diaminopimelate epimerase |
| BAcidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) | ACIFD00622 | C7LY03 | Diaminopimelate epimerase |
| BAcidothermus cellulolyticus (strain ATCC 43068 / 11B) | ACIC101479 | DAPF_ACIC1 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: tfu:Tfu_0816 diaminopimelate epimerase |
| BThermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) | THEBD01116 | D6Y834 | diaminopimelate epimerase KEGG: hha:Hhal_1200 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) | BIFAA01164 | A1A2L5 | diaminopimelate epimerase COG family: diaminopimelateepimerase Dap epimerase Orthologue of BL0087 PFAM_ID: DAP_epimerase |
| BBifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) | BIFAR01210 | AFI63443.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBifidobacterium animalis subsp. lactis (strain AD011) | BIFA000822 | B8DT02 | Diaminopimelate epimerase |
| BBifidobacterium animalis subsp. lactis (strain BB-12) | BIFAB00140 | D3R6B5 | Diaminopimelate epimerase |
| BBifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) | BIFLB01218 | ACS46617.1 | Diaminopimelate epimerase |
| BBifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) | BIFAS01218 | ACS48184.1 | Diaminopimelate epimerase |
| BBifidobacterium animalis subsp. lactis (strain V9) | BIFAV01222 | ADG33813.1 | Diaminopimelate epimerase |
| BBifidobacterium asteroides (strain PRL2011) | BIFAP00465 | K4IKG9 | diaminopimelate epimerase |
| BBifidobacterium bifidum (strain PRL2010) | BIFBP00425 | A0A0H3EB98 | DapF Diaminopimelate epimerase |
| BBifidobacterium bifidum (strain S17) | BIFBS00491 | E3EM00 | Diaminopimelate epimerase |
| BBifidobacterium breve (strain ACS-071-V-Sch8b) | BIFBA01099 | AEF27870.1 | diaminopimelate epimerase |
| BBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) | BIFDB01513 | D2Q5K6 | DapF Diaminopimelate epimerase |
| BBifidobacterium longum (strain DJO10A) | BIFLD00098 | B3DQ52 | Diaminopimelate epimerase |
| BBifidobacterium longum (strain NCC 2705) | BIFLO00085 | Q8G7Z7 | Diaminopimelate epimerase |
| BBifidobacterium longum subsp. infantis (strain 157F) | BIFL101375 | E8MUU9 | diaminopimelate epimerase |
| BBifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) | BIFLS00156 | B7GPZ2 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: blo:BL0087 diaminopimelate epimerase |
| BBifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) | BIFL201338 | E8ME99 | diaminopimelate epimerase |
| BBifidobacterium longum subsp. longum (strain BBMN68) | BIFLM00130 | ADQ02257.1 | DapF Diaminopimelate epimerase |
| BBifidobacterium longum subsp. longum (strain JDM301) | BIFLJ01315 | D6ZVC2 | Diaminopimelate epimerase |
| BCatenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) | CATAD01588 | C7QBG7 | Diaminopimelate epimerase |
| BCorynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) | CORA701459 | DAPF_CORA7 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain 241) | CORD201365 | AEX44448.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain 31A) | CORD301425 | AEX42131.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain ATCC 27012 / C7 (beta)) | CORD701426 | AEX67638.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) | CORDI01403 | Q6NGR6 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain CDCE 8392) | CORDD01340 | AEX72348.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain HC01) | CORDH01364 | AEX74633.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain HC02) | CORDJ01319 | AEX76830.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain HC03) | CORDK01340 | AEX79090.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain HC04) | CORDL01345 | AEX81354.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain PW8) | CORDW01351 | AEX70085.1 | Diaminopimelate epimerase |
| BCorynebacterium diphtheriae (strain VA01) | CORDV01310 | AEX83592.1 | Diaminopimelate epimerase |
| BCorynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) | COREF01788 | Q8FPE1 | putative diaminopimelate epimerase CE1837, similar to AX244015-1|CAC88486.1| percent identity: 67 in 279 aa |
| BCorynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) | CORGL01935 | DAPF_CORGL | Diaminopimelate epimerase |
| BCorynebacterium glutamicum (strain ATCC 13032 / K051) | CORGK01859 | CCH25088.1 | diaminopimelate epimerase |
| BCorynebacterium glutamicum (strain R) | CORGB01804 | DAPF_CORGB | Hypothetical protein |
| BCorynebacterium jeikeium (strain K411) | CORJK01069 | Q4JV83 | Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase). |
| BCorynebacterium kroppenstedtii (strain DSM 44385 / JCM 11950 / CIP 105744 / CCUG 35717) | CORK401052 | C4LJ46 | Diaminopimelate epimerase |
| BCorynebacterium pseudotuberculosis (strain 1002) | CORP101239 | ADL21121.1 | Diaminopimelate epimerase |
| BCorynebacterium pseudotuberculosis (strain C231) | CORP201214 | D9QAY7 | Diaminopimelate epimerase |
| BCorynebacterium pseudotuberculosis (strain FRC41) | CORPF01246 | ADK29039.1 | Diaminopimelate epimerase |
| BCorynebacterium pseudotuberculosis (strain I19) | CORP901237 | ADO26512.1 | Diaminopimelate epimerase |
| BCorynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026) | CORRG01163 | F8DXZ7 | Diaminopimelate epimerase |
| BCorynebacterium ulcerans (strain BR-AD22) | CORUB01344 | AEG84062.1 | Diaminopimelate epimerase |
| BCorynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) | CORVD01578 | G0HEH5 | Diaminopimelate epimerase |
| BGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) | GORB402061 | D0LBP8 | Diaminopimelate epimerase |
| BGordonia polyisoprenivorans (strain DSM 44266 / VH2) | GORPV02063 | H6MZ08 | diaminopimelate epimerase DapF |
| BHoyosella subflava (strain DSM 45089 / JCM 17490 / NBRC 109087 / DQS3-9A1) | HOYSD01712 | F6EKN7 | Diaminopimelate epimerase |
| BMycobacterium abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543) | MYCA903016 | DAPF_MYCA9 | Probable diaminopimelate epimerase |
| BMycobacterium asiaticum | MYCAS02878 | A0A1A3MIZ9 | - |
| BMycobacterium avium (strain 104) | MYCA103413 | DAPF_MYCA1 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BMycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) | MYCPA02811 | DAPF_MYCPA | Diaminopimelate epimerase |
| BMycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) | MYCIA03437 | H8IVZ3 | diaminopimelate epimerase |
| BMycobacterium chubuense (strain NBB4) | MYCCN02079 | I4BI09 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMycobacterium gilvum (strain DSM 45189 / LMG 24558 / Spyr1) | MYCSR03107 | E6TET4 | |
| BMycobacterium gilvum (strain PYR-GCK) | MYCGI03863 | DAPF_MYCGI | diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mpa:MAP2840c diaminopimelate epimerase |
| BMycobacterium leprae (strain Br4923) | MYCLB00987 | DAPF_MYCLB | Diaminopimelate epimerase |
| BMycobacterium leprae (strain TN) | MYCLE00986 | DAPF_MYCLE | Diaminopimelate epimerase |
| BMycobacterium marinum (strain ATCC BAA-535 / M) | MYCMM01948 | DAPF_MYCMM | Diaminopimelate epimerase DapF |
| BMycobacterium rhodesiae (strain NBB3) | MYCRN05363 | G8RKT0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMycobacterium sinense (strain JDM601) | MYCSD02454 | F5YW57 | diaminopimelate epimerase DapF |
| BMycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | MYCS202557 | DAPF_MYCS2 | Diaminopimelate epimerase |
| BMycobacterium sp. (strain JLS) | MYCSJ02104 | DAPF_MYCSJ | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mmc:Mmcs_2163 diaminopimelate epimerase |
| BMycobacterium sp. (strain KMS) | MYCSK02142 | DAPF_MYCSK | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mmc:Mmcs_2163 diaminopimelate epimerase |
| BMycobacterium sp. (strain MCS) | MYCSS02130 | ABG08271.1 | Diaminopimelate epimerase |
| BMycobacterium africanum (strain GM041182) | MYCA002714 | F8M3I0 | putative diaminopimelate epimerase DAPF (DAP epimerase) |
| BMycobacterium bovis (strain ATCC BAA-935 / AF2122/97) | MYCBO00192 | DAPF_MYCBO | PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) Mb2745c, dapF, len: 289 aa. Equivalent to Rv2726c, len: 289 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 289 aa overlap). Probable dapF, diaminopimelate epimerase (EC 5.1.1.7), equivalent to P46814|DAPF_MYCLE|ML0996|B2235_C3_233 DIAMINOPIMELATE EPIMERASE from Mycobacterium leprae (296 aa), FASTA scores: opt: 1488, E(): 2.1e-83, (76.05% identity in 292 aa overlap). Also highly similar to O69969|DAPF_STRCO|SC4H2.14 from Streptomyces coelicolor (289 aa), FASTA scores: opt: 439, E(): 1.4e-19, (45.6% identity in 296 aa overlap); and similar to many e.g. O29511|DAPF_ARCFU|AF0747 from Archaeoglobus fulgidus (280 aa), FASTA scores: opt: 310, E(): 9.7e-12, (33.8% identity in 296 aa overlap); Q51564|DAPF_PSEAE|PA5278 from Pseudomonas aeruginosa (276 aa), FASTA scores: opt: 272, E(): 2e-09, (30.15% identity in 292 aa overlap); P08885|DAPF_ECOLI|B3809 from Escherichia coli strain K12 (274 aa), FASTA scores: opt: 266, E(): 4.5e-09, (30.4% identity in 296 aa overlap); etc. BELONGS TO THE DIAMINOPIMELATE EPIMERASE FAMILY. |
| BMycobacterium bovis (strain BCG / Pasteur 1173P2) | MYCBP02712 | DAPF_MYCBP | Probable diaminopimelate epimerase dapF |
| BMycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) | MYCBT02716 | DAPF_MYCBT | Diaminopimelate epimerase |
| BMycobacterium canettii (strain CIPT 140010059) | MYCCP02723 | G0TQV7 | putative diaminopimelate epimerase DAPF (DAP epimerase) |
| BMycobacterium tuberculosis (strain ATCC 25177 / H37Ra) | MYCTA02777 | DAPF_MYCTA | Diaminopimelate epimerase |
| BMycobacterium tuberculosis (strain ATCC 25618 / H37Rv) | MYCTU02747 | DAPF_MYCTU | Diaminopimelate epimerase |
| BMycobacterium tuberculosis (strain CCDC5079) | MYCTC02485 | AEJ47692.1 | diaminopimelate epimerase dapF |
| BMycobacterium tuberculosis (strain CCDC5180) | MYCTD02448 | AEJ51309.1 | diaminopimelate epimerase dapF |
| BMycobacterium tuberculosis (strain F11) | MYCTF02658 | EAX14563.1 | diaminopimelate epimerase dapF Mapped to H37Rv Rv2726c |
| BMycobacterium tuberculosis (strain KZN 1435 / MDR) | MYCTK01269 | ACT24299.1 | Diaminopimelate epimerase |
| BMycobacterium ulcerans (strain Agy99) | MYCUA02736 | DAPF_MYCUA | diaminopimelate epimerase DapF cytoplasmic protein involved in the biosynthesis of lysine from aspartate semialdehyde (at the sixth step) [catalytic activity: LL-2,6-diaminoheptanedioate = meso- diaminoheptanedioate] |
| BMycobacterium vanbaalenii (strain DSM 7251 / PYR-1) | MYCVP02343 | DAPF_MYCVP | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mbo:Mb2745c diaminopimelate epimerase |
| BNocardia cyriacigeorgica (strain GUH-2) | NOCCG03642 | H6R372 | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 18269631; Product type e : enzyme |
| BNocardia farcinica (strain IFM 10152) | NOCFA03844 | Q5YT14 | Putative diaminopimelate epimerase |
| BRhodococcus erythropolis (strain PR4 / NBRC 100887) | RHOE402757 | DAPF_RHOE4 | Diaminopimelate epimerase |
| BRhodococcus equi (strain 103S) | RHOE101883 | CBH48044.1 | Diaminopimelate epimerase |
| BRhodococcus jostii (strain RHA1) | RHOJR06684 | DAPF_RHOJR | Diaminopimelate epimerase |
| BRhodococcus opacus (strain B4) | RHOOB06758 | DAPF_RHOOB | Diaminopimelate epimerase |
| BSegniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) | SEGRD00926 | D6ZEP6 | Diaminopimelate epimerase |
| BTsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) | TSUPD01723 | D5UMD7 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: rer:RER_27650 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BFrankia casuarinae (strain DSM 45818 / CECT 9043 / CcI3) | FRACC03416 | Q2J775 | diaminopimelate epimerase |
| BFrankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c) | FRAIE01130 | E3J142 | diaminopimelate epimerase KEGG: fal:FRAAL5707 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BFrankia sp. (strain EAN1pec) | FRASN01207 | A8L6K2 | Diaminopimelate epimerase |
| BBlastococcus saxobsidens (strain DD2) | BLASD03495 | H6RVP9 | Diaminopimelate epimerase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| BGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) | GEOOG03648 | D2SDR0 | Diaminopimelate epimerase |
| BModestobacter marinus (strain BC501) | MODMB04206 | CCH89689.1 | Diaminopimelate epimerase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| BStackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) | STANL04491 | D3Q6H1 | Diaminopimelate epimerase |
| BKineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) | KINRD01497 | A6W850 | Diaminopimelate epimerase |
| BBeutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) | BEUC102422 | C5BWM2 | Diaminopimelate epimerase |
| BCellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) | CELFA01560 | F4H780 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) | CELFN01533 | D5UDP8 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCellulomonas gilvus (strain ATCC 13127 / NRRL B-14078) | CELGA01985 | F7ZZN7 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBrachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) | BRAFD01015 | C7MBD3 | Diaminopimelate epimerase |
| BJonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) | JONDD01026 | C7R3G9 | Diaminopimelate epimerase |
| BClavibacter michiganensis subsp. michiganensis (strain NCPPB 382) | CLAM302040 | DAPF_CLAM3 | DapF protein |
| BClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) | CLAMS01172 | DAPF_CLAMS | Diaminopimelate epimerase |
| BLeifsonia xyli subsp. xyli (strain CTCB07) | LEIXX01261 | DAPF_LEIXX | Diaminopimelate epimerase |
| BMicrobacterium testaceum (strain StLB037) | MICTS00299 | E8N9L6 | diaminopimelate epimerase |
| BArthrobacter sp. (strain FB24) | ARTS201454 | A0JUY8 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: lxx:Lxx15970 diaminopimelate epimerase |
| BGlutamicibacter arilaitensis (strain DSM 16368 / CIP 108037 / IAM 15318 / JCM 13566 / Re117) | GLUAR01046 | E1VUL2 | diaminopimelate epimerase catalyzes the isomerization of L,L- to D,L-meso- diaminopimelate in the biosynthetic pathway leading from aspartate to lysine |
| BKocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) | KOCRD01576 | B2GKG8 | Diaminopimelate epimerase |
| BMicrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230) | MICLC00670 | C5C9V7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BPaenarthrobacter aurescens (strain TC1) | PAEAT01526 | A1R552 | Diaminopimelate epimerase |
| BPseudarthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / CIP 107037 / JCM 12360 / KCTC 9906 / NCIMB 13794 / A6) | PSECP01450 | B8HG93 | Diaminopimelate epimerase |
| BPseudarthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) | PSEPM01383 | F0M825 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BRenibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) | RENSM00691 | A9WQ49 | Diaminopimelate epimerase |
| BRothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA) | ROTDC01575 | E3H0E8 | Diaminopimelate epimerase |
| BRothia mucilaginosa (strain DY-18) | ROTMD01445 | D2NNR0 | Diaminopimelate epimerase |
| BXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) | XYLCX01243 | D1C095 | diaminopimelate epimerase KEGG: aeh:Mlg_0061 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) | SANKS02245 | D1BJ30 | Diaminopimelate epimerase |
| BActinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) | ACTM406885 | I0HGI1 | putative diaminopimelate epimerase |
| BActinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) | ACTS507013 | G8SGZ5 | diaminopimelate epimerase Diaminopimelate epimerase |
| BMicromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / BCRC 12538 / CBS 129.76 / JCM 10878 / NBRC 16125 / NRRL B-16091 / INA 9442) | MICAI01536 | D9SYS3 | Diaminopimelate epimerase |
| BMicromonospora sp. (strain L5) | MICSL01776 | ADU07342.1 | |
| BSalinispora arenicola (strain CNS-205) | SALAI01365 | A8M7X0 | Diaminopimelate epimerase |
| BSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) | SALTO01424 | A4X4W2 | Diaminopimelate epimerase |
| BVerrucosispora maris (strain AB-18-032) | VERMA01559 | F4FCU4 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BNakamurella multipartita (strain ATCC 700099 / DSM 44233 / CIP 104796 / JCM 9543 / NBRC 105858 / Y-104) | NAKMY03722 | C8XH43 | Diaminopimelate epimerase |
| BKribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) | KRIFD04596 | D2PZC1 | Diaminopimelate epimerase |
| BNocardioides sp. (strain ATCC BAA-499 / JS614) | NOCSJ03765 | A1SNF4 | Diaminopimelate epimerase |
| BAcidipropionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) | ACIA401543 | K7RWT1 | Diaminopimelate epimerase |
| BPropionibacterium acnes (strain KPA171202 / DSM 16379) | PROAC01006 | Q6A8Z4 | Diaminopimelate epimerase |
| BPropionibacterium acnes (strain SK137) | PROAS01051 | D4HDH9 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BMicrolunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) | MICPN02104 | F5XDX0 | diaminopimelate epimerase |
| BPropionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / DSM 4902 / CIP 103027 / NCIMB 8099 / CIRM-BIA1) | PROFC01283 | D7GE64 | Diaminopimelate epimerase LL-2,6-Diaminoheptanedioate <=> meso-2,6-Diaminoheptanedioate |
| BPseudopropionibacterium propionicum (strain F0230a) | PSEPQ01259 | I6XQ95 | diaminopimelate epimerase |
| BActinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) | ACTMD01414 | C6WAC3 | Diaminopimelate epimerase |
| BAmycolatopsis mediterranei (strain S699) | AMYMS03406 | G0G6B3 | diaminopimelate epimerase |
| BAmycolatopsis mediterranei (strain U-32) | AMYMU02350 | A0A0H3D1V6 | diaminopimelate epimerase |
| BPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) | PSEUX02027 | F4CJA4 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: ami:Amir_1439 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) | SACVD02651 | C7MVB6 | Diaminopimelate epimerase |
| BSaccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338) | SACEN01706 | A4FAJ6 | Diaminopimelate epimerase |
| BSaccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) | SACES01688 | K0JXT1 | Diaminopimelate epimerase |
| BRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) | RUBXD00094 | Q1AZV3 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mta:Moth_0888 diaminopimelate epimerase |
| BKitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) | KITSK05170 | E4NI20 | putative diaminopimelate epimerase protein synonym:DAP epimerase |
| BStreptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) | STRAW02472 | Q82KD0 | Putative diaminopimelate epimerase |
| BStreptomyces bingchenggensis (strain BCW-1) | STRBB03318 | D7CA85 | Diaminopimelate epimerase 1 |
| BStreptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) | STREN05654 | F8JUT9 | diaminopimelate epimerase |
| BStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) | STRCO06424 | DAPF_STRCO | diaminopimelate epimerase SC4H2.14, dapF, probable diaminopimelate epimerase, len: 289 aa; similar to many e.g. DAPF_ECOLI P08885 diaminopimelate epimerase (ec 5.1.1.7) (275 aa), fasta scores; opt: 312 z-score: 525.5 E(): 4.8e-22, 34.1% identity in 287 aa overlap |
| BStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG01600 | B1VXU0 | Putative diaminopimelate epimerase |
| BStreptomyces hygroscopicus subsp. jinggangensis (strain 5008) | STRHJ06813 | H2K0S3 | diaminopimelate epimerase |
| BStreptomyces pratensis (strain ATCC 33331 / IAF-45CD) | STRFA01512 | E8W675 | diaminopimelate epimerase KEGG: sgr:SGR_1727 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BStreptomyces scabiei (strain 87.22) | STRSW02321 | C9Z0N1 | Diaminopimelate epimerase |
| BStreptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) | STRVP05459 | F2R6X5 | Diaminopimelate epimerase |
| BNocardiopsis alba (strain ATCC BAA-2165 / BE74) | NOCAA03509 | J7LD61 | diaminopimelate epimerase |
| BNocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / CIP 107115 / JCM 7437 / KCTC 9190 / NBRC 14626 / NCTC 10488 / NRRL B-5397 / IMRU 509) | NOCDD00669 | D7AYD7 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: tfu:Tfu_0816 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: C1YNI3 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThermobifida fusca (strain YX) | THEFY00814 | DAPF_THEFY | diaminopimelate epimerase |
| BStreptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) | STRRD02153 | D2AZH2 | Diaminopimelate epimerase |
| BThermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NBRC 15933 / NCIMB 10081 / Henssen B9) | THECD03209 | D1AAA7 | Diaminopimelate epimerase |
| BAquifex aeolicus (strain VF5) | AQUAE01270 | DAPF_AQUAE | Diaminopimelate epimerase |
| BHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) | HYDTT01751 | D3DK68 | Diaminopimelate epimerase |
| BHydrogenobaculum sp. (strain Y04AAS1) | HYDS001158 | DAPF_HYDS0 | Diaminopimelate epimerase |
| BThermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) | THEAH01279 | D3SMD8 | Diaminopimelate epimerase |
| BPersephonella marina (strain DSM 14350 / EX-H1) | PERMH01007 | C0QQ59 | Diaminopimelate epimerase |
| BSulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) | SULAA00933 | C1DV08 | Diaminopimelate epimerase |
| BSulfurihydrogenibium sp. (strain YO3AOP1) | SULSY00161 | B2V734 | Diaminopimelate epimerase |
| BDesulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) | DESTD00428 | F0S2M1 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: hth:HTH_1776 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) | THEA101254 | E8T397 | diaminopimelate epimerase KEGG: tal:Thal_1287 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BRhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) | RHOM400744 | D0MG97 | diaminopimelate epimerase KEGG: sfu:Sfum_0057 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; Phenazine biosynthesis PhzC/PhzF protein |
| BSalinibacter ruber (strain DSM 13855 / M31) | SALRD01370 | Q2S2P2 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BSalinibacter ruber (strain M8) | SALRM01598 | D5H923 | Diaminopimelate epimerase |
| BBacteroides fragilis (strain 638R) | BACF602552 | E1WQF0 | diaminopimelate epimerase |
| BBacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) | BACFN02582 | Q5LC04 | diaminopimelate epimerase Similar to Escherichia coli, and Escherichia coli O157:H7 diaminopimelate epimerase DapF or B3809 or Z5326 or ECS4739 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3.6e-17, 38.71% id in 279 aa, and to Aquifex aeolicus diaminopimelate epimerase DapF or AQ_1838 SWALL:DAPF_AQUAE (SWALL:O67693) (279 aa) fasta scores: E(): 3.6e-25, 36.36% id in 275 aa |
| BBacteroides fragilis (strain YCH46) | BACFR02628 | DAPF_BACFR | Diaminopimelate epimerase |
| BBacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) | BACT602014 | E6SRE3 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: bth:BT_0548 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BBacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) | BACSH02588 | F0QZW6 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: bth:BT_0548 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BBacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) | BACTN00544 | DAPF_BACTN | Diaminopimelate epimerase |
| BBacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154) | BACV803794 | DAPF_BACV8 | Diaminopimelate epimerase |
| BPaludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) | PALPW01080 | E4T3E8 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: mmx:MmarC6_1738 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BPrevotella ruminicola (strain ATCC 19189 / JCM 8958 / 23) | PRER201826 | D5EUD3 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BAlistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) | ALIFI01798 | I3YMP8 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BParabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) | PARD800305 | DAPF_PARD8 | Diaminopimelate epimerase |
| BAzobacteroides pseudotrichonymphae genomovar. CFP2 | AZOPC00715 | DAPF_AZOPC | Diaminopimelate epimerase |
| BChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) | CHIPD04611 | C7PKR5 | Diaminopimelate epimerase |
| BNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) | NIAKG04179 | G8TFY7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cpi:Cpin_4694 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BAmoebophilus asiaticus (strain 5a2) | AMOA500701 | B3ESH9 | Putative uncharacterized protein |
| BBernardetia litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) | BERLS03121 | I4ANZ7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BBelliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) | BELBD00765 | I3Z2J3 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCyclobacterium marinum (strain ATCC 25205 / DSM 745) | CYCMS01752 | G0IW00 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: sli:Slin_1455 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BEchinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) | ECHVK01380 | L0FY66 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) | CYTH300126 | Q11YU6 | diaminopimelate epimerase |
| BDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) | DYAFD05002 | C6W7U7 | Diaminopimelate epimerase |
| BEmticicia oligotrophica (strain DSM 17448 / GPTSA100-15) | EMTOG03250 | I2EYK3 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: dfe:Dfer_5091 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BLeadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) | LEAB403224 | E4RXW1 | Diaminopimelate epimerase |
| BRunella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) | RUNSL05369 | F8EPB2 | Diaminopimelate epimerase |
| BSpirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) | SPILD01419 | D2QN21 | diaminopimelate epimerase KEGG: sat:SYN_00169 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BMarivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) | MARTH01723 | E4TRM6 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: cat:CA2559_12773 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BBlattabacterium sp. subsp. Blattella germanica (strain Bge) | BLASB00368 | D0JB68 | Diaminopimelate epimerase |
| BBlattabacterium sp. subsp. Periplaneta americana (strain BPLAN) | BLASP00231 | D0J951 | Diaminopimelate epimerase |
| BFluviicola taffensis (strain DSM 16823 / NCIMB 13979 / RW262) | FLUTR03360 | F2IBQ3 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cpi:Cpin_4694 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BOwenweeksia hongkongensis (strain DSM 17368 / CIP 108786 / JCM 12287 / NRRL B-23963 / UST20020801) | OWEHD00990 | G8R3Z0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) | AEQSU02292 | I3YXW2 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCapnocytophaga canimorsus (strain 5) | CAPCC01163 | F9YP97 | Diaminopimelate epimerase Short=DAP epimerase; Diaminopimelate epimerase (MF_00197); Diaminopimelate epimerase-like (SSF54506); Diaminopimelate epimerase, active site (PS01326); Diaminopimelate epimerase (TIGR00652); Undefined Gene3D domain (G3DSA:3.10.310.10); Diaminopimelate epimerase (PF01678); GO_component: GO:0005737 - cytoplasm; GO_function: GO:0008837 - diaminopimelate epimerase activity; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate |
| BCapnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) | CAPOD01592 | C7M779 | Diaminopimelate epimerase |
| BCellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) | CELAD00007 | E6X5K8 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: fbc:FB2170_13508 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) | CELLC00007 | F0REQ0 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: fbc:FB2170_13508 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCroceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) | CROAH02525 | A3UAS7 | Diaminopimelate epimerase |
| BDokdonia sp. (strain 4H-3-7-5) | DOKS400181 | F4AXQ5 | diaminopimelate epimerase KEGG: fjo:Fjoh_0018 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BFlavobacterium branchiophilum (strain FL-15) | FLABF00370 | G2Z4P6 | Diaminopimelate epimerase |
| BFlavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) | FLACA00908 | G8X8E2 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BFlavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) | FLAIG01932 | H8XVK7 | Diaminopimelate epimerase |
| BFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) | FLAJ100018 | A5FP09 | Diaminopimelate epimerase |
| BFlavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) | FLAPJ01177 | DAPF_FLAPJ | Diaminopimelate epimerase |
| BGramella forsetii (strain KT0803) | GRAFK00610 | A0LZ07 | diaminopimelate epimerase |
| BLacinutrix sp. (strain 5H-3-7-4) | LACS500009 | F6GBW8 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: fbc:FB2170_13508 diaminopimelate epimerase |
| BLeeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) | LEEBM01578 | A3XMA0 | Diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BMaribacter sp. (strain HTCC2170 / KCCM 42371) | MARSH02892 | A4AQ09 | diaminopimelate epimerase |
| BMuricauda ruestringensis (strain DSM 13258 / CIP 107369 / LMG 19739 / B1) | MURRD00007 | G2PQT3 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: fbc:FB2170_13508 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BNonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6) | NONDD02580 | L7WBV3 | diaminopimelate epimerase |
| BOrnithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / CIP 104009 / LMG 9086) | ORNRL00224 | I3ZXM5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BPsychroflexus torquis (strain ATCC 700755 / ACAM 623) | PSYTT00288 | K4IPC3 | diaminopimelate epimerase DapF |
| BRiemerella anatipestifer (strain RA-GD) | RIEAR01692 | ADZ12902.1 | Diaminopimelate epimerase |
| BRobiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) | ROBBH02544 | A4CLX3 | diaminopimelate epimerase |
| BWeeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) | WEEVC00695 | F0P0E4 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: fjo:Fjoh_0018 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BZobellia galactanivorans (strain DSM 12802 / CCUG 47099 / CIP 106680 / NCIMB 13871 / Dsij) | ZOBGA00008 | G0LCU8 | Diaminopimelate epimerase The diaminopimelate epimerase catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine; The meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall; Enzyme consists of two domains of the same alpha/beta fold; Localized in the cytoplasm High confidence in function and specificity |
| BZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) | ZUNPS03527 | D5BKJ9 | Diaminopimelate epimerase |
| BFlavobacteriaceae bacterium (strain 3519-10) | FLAB300578 | C6X3R8 | Diaminopimelate epimerase |
| BSulcia muelleri (strain CARI) | SULMC00227 | E0TJT6 | diaminopimelate epimerase |
| BSulcia muelleri (strain DMIN) | SULMD00210 | D5D900 | Diaminopimelate epimerase |
| BSulcia muelleri (strain GWSS) | SULMW00210 | A8Z693 | Diaminopimelate epimerase |
| BSulcia muelleri (strain SMDSEM) | SULMS00224 | C7LKJ5 | Diaminopimelate epimerase |
| BHaliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) | HALH101325 | F4KW74 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cpi:Cpin_4694 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; IMG reference gene:2504770728; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSaprospira grandis (strain Lewin) | SAPGL01360 | H6L6I6 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BPedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) | PEDHD00208 | C6XYG7 | Diaminopimelate epimerase |
| BPseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) | PSESL02702 | F0S7P7 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: phe:Phep_0208 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSolitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) | SOLCM03594 | H8KMH5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSphingobacterium sp. (strain 21) | SPHS201065 | F4CD65 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: phe:Phep_0208 diaminopimelate epimerase |
| BCaldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) | CALEA00735 | I0GJD7 | diaminopimelate epimerase |
| BCloacimonas acidaminovorans (strain Evry) | CLOAI00271 | B0VFD7 | diaminopimelate epimerase (DAP epimerase) Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3042781, 6378903; Product type e : enzyme |
| BChlamydia abortus (strain DSM 27085 / S26/3) | CHLAB00221 | Q5L6P2 | putative diaminopimelate epimerase Similar to Chlamydia pneumoniae diaminopimelate epimerase DapF or cpn0519 or cp0234 SWALL:DAPF_CHLPN (SWALL:Q9Z833) (257 aa) fasta scores: E(): 9.5e-53, 54.82% id in 259 aa |
| BChlamydia muridarum (strain MoPn / Nigg) | CHLMU00700 | DAPF_CHLMU | diaminopimelate epimerase identified by match to PFAM protein family HMM PF01678 |
| BChlamydia pneumoniae | CHLPN00499 | DAPF_CHLPN | Diaminopimelate epimerase |
| BChlamydophila pneumoniae (strain LPCoLN) | CHLPP00234 | ACZ33494.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis (strain D/UW-3/Cx) | CHLTR00441 | DAPF_CHLTR | Diaminopimelate epimerase |
| BChlamydia trachomatis (strain L2c) | CHLTC00734 | AEJ77384.1 | diaminopimelate epimerase [E] COG0253 Diaminopimelate epimerase |
| BChlamydia trachomatis serovar A (strain A2497) | CHLT400693 | G4NNH3 | diaminopimelate epimerase |
| BChlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13) | CHLTA00453 | DAPF_CHLTA | diaminopimelate epimerase |
| BChlamydia trachomatis serovar B (strain Jali20/OT) | CHLTJ00440 | CAX10885.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar B (strain TZ1A828/OT) | CHLTZ00441 | CAX09992.1 | diaminopimelate epimerase |
| BChlamydia trachomatis serovar D (strain D-EC) | CHLTD00430 | ADI51106.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar D (strain D-LC) | CHLTL00430 | ADI52118.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar E (strain E/11023) | CHLT100445 | ADH20899.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BChlamydia trachomatis serovar E (strain E/150) | CHLT500443 | ADH17204.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BChlamydia trachomatis serovar E (strain Sweden2) | CHLTS00437 | CBJ14951.1 | diaminopimelate epimerase |
| BChlamydia trachomatis serovar G (strain G/11074) | CHLTG00440 | ADH19975.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BChlamydia trachomatis serovar G (strain G/11222) | CHLT000442 | ADH19050.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar G (strain G/9301) | CHLT900441 | ADH97072.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BChlamydia trachomatis serovar G (strain G/9768) | CHLT700439 | ADH18127.1 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) | CHLT200684 | DAPF_CHLT2 | Diaminopimelate epimerase |
| BChlamydia trachomatis serovar L2b (strain UCH-1/proctitis) | CHLTB00684 | DAPF_CHLTB | Diaminopimelate epimerase |
| BChlamydophila psittaci (strain ATCC VR-125 / 6BC) | CHLP600219 | ADZ19016.1 | diaminopimelate epimerase [E] COG0253 Diaminopimelate epimerase |
| BChlamydophila psittaci (strain RD1) | CHLP100221 | CBY16765.1 | putative diaminopimelate epimerase |
| BProtochlamydia amoebophila (strain UWE25) | PARUW00441 | Q6ME33 | Putative diaminopimelate epimerase |
| BParachlamydia acanthamoebae (strain UV7) | PARAV00154 | F8KW07 | diaminopimelate epimerase |
| BSimkania negevensis (strain ATCC VR-1471 / Z) | SIMNZ02021 | F8L3P2 | diaminopimelate epimerase |
| BWaddlia chondrophila (strain ATCC VR-1470 / WSU 86-1044) | WADCW01399 | D6YRW3 | Diaminopimelate epimerase |
| BChlorobaculum parvum (strain NCIB 8327) | CHLP801862 | B3QL52 | Diaminopimelate epimerase |
| BChlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) | CHLTE01989 | DAPF_CHLTE | Diaminopimelate epimerase |
| BChlorobium chlorochromatii (strain CaD3) | CHLCH00334 | Q3ATR0 | diaminopimelate epimerase |
| BChlorobium limicola (strain DSM 245 / NBRC 103803 / 6330) | CHLL200170 | B3EEP7 | Diaminopimelate epimerase |
| BChlorobium phaeobacteroides (strain BS1) | CHLPB00280 | B3EL46 | Diaminopimelate epimerase |
| BChlorobium phaeobacteroides (strain DSM 266) | CHLPD00201 | A1BD08 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: cch:Cag_0342 diaminopimelate epimerase |
| BChlorobium phaeovibrioides (strain DSM 265 / 1930) | CHLPM01598 | A4SGM1 | diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: plt:Plut_1977 diaminopimelate epimerase |
| BChloroherpeton thalassium (strain ATCC 35110 / GB-78) | CHLT300925 | B3QXC3 | Diaminopimelate epimerase |
| BChlorobium luteolum (strain DSM 273 / 2530) | CHLL701921 | Q3B1G2 | diaminopimelate epimerase |
| BPelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) | PELPB02472 | B4SGB7 | Diaminopimelate epimerase |
| BProsthecochloris aestuarii (strain DSM 271 / SK 413) | PROA200263 | B4S482 | Diaminopimelate epimerase |
| BDehalococcoides mccartyi (strain ATCC BAA-2100 / JCM 16839 / KCTC 5957 / BAV1) | DEHMB00648 | ABQ17254.1 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase |
| BDehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) | DEHM100642 | Q3Z8H4 | diaminopimelate epimerase identified by similarity to SP:P08885; match to protein family HMM TIGR00652 |
| BDehalococcoides mccartyi (strain CBDB1) | DEHMC00597 | CAI82876.1 | diaminopimelate epimerase |
| BDehalococcoides mccartyi (strain GT) | DEHMG00589 | ADC73998.1 | diaminopimelate epimerase KEGG: det:DET0740 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BDehalococcoides mccartyi (strain VS) | DEHMV00600 | D2BHI7 | diaminopimelate epimerase |
| BDehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) | DEHLB00643 | D8K076 | diaminopimelate epimerase KEGG: deg:DehalGT_0631 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BSphaerobacter thermophilus (strain DSM 20745 / S 6022) | SPHTD02885 | D1C945 | Diaminopimelate epimerase |
| BDesulfurispirillum indicum (strain ATCC BAA-1389 / S5) | DESIS00050 | E6W4T1 | diaminopimelate epimerase KEGG: ddf:DEFDS_0214 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BGloeobacter violaceus (strain PCC 7421) | GLOVI00808 | Q7NMF1 | diaminopimelate epimerase ORF_ID:gll0815 |
| BAnabaena cylindrica (strain ATCC 27899 / PCC 7122) | ANACC01073 | K9ZBX2 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: naz:Aazo_1418 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BAnabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT03027 | Q3M8I9 | diaminopimelate epimerase |
| BNostoc punctiforme (strain ATCC 29133 / PCC 73102) | NOSP704669 | DAPF_NOSP7 | Diaminopimelate epimerase |
| BNostoc sp. (strain ATCC 29411 / PCC 7524) | NOSS700223 | K9QM47 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BNostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) | NOSS102025 | DAPF1_NOSS1 | Diaminopimelate epimerase 2 |
| BNostoc azollae (strain 0708) | NOSA000982 | D7E3Y4 | Diaminopimelate epimerase |
| BAtelocyanobacterium thalassa (isolate ALOHA) | ATETH00461 | D3EP27 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BHalothece sp. (strain PCC 7418) | HALP703361 | K9YHQ9 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653:IPR018510; KEGG: cyt:cce_4146 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCyanobacterium aponinum (strain PCC 10605) | CYAAP00535 | K9Z2X5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: syn:slr1665 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BCyanobacterium stanieri (strain ATCC 29140 / PCC 7202) | CYASC02751 | K9YPF3 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653:IPR018510; KEGG: cyt:cce_4146 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMicrocystis aeruginosa (strain NIES-843) | MICAN05585 | DAPF_MICAN | Diaminopimelate epimerase |
| BCyanothece sp. (strain ATCC 51142) | CYAA504081 | B1WRQ3 | Diaminopimelate epimerase |
| BCyanothece sp. (strain PCC 7424) | CYAP704986 | DAPF_CYAP7 | Diaminopimelate epimerase |
| BCyanothece sp. (strain PCC 7425 / ATCC 29141) | CYAP400339 | DAPF_CYAP4 | Diaminopimelate epimerase |
| BCyanothece sp. (strain PCC 7822) | CYAP203983 | E0U817 | Diaminopimelate epimerase |
| BCyanothece sp. (strain PCC 8801) | CYAP802221 | DAPF_CYAP8 | Diaminopimelate epimerase |
| BCyanothece sp. (strain PCC 8802) | CYAP002248 | ACV01251.1 | Diaminopimelate epimerase |
| BArthrospira platensis (strain NIES-39 / IAM M-135) | ARTPN02419 | D4ZQS6 | - |
| BTrichodesmium erythraeum (strain IMS101) | TRIEI00972 | DAPF_TRIEI | Diaminopimelate epimerase |
| BLyngbya sp. (strain PCC 8106) | LYNSP00148 | A0YIC3 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BStanieria cyanosphaera (strain ATCC 29371 / PCC 7437) | STAC703071 | K9XW03 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cyc:PCC7424_5143 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BAcaryochloris marina (strain MBIC 11017) | ACAM102202 | DAPF_ACAM1 | Diaminopimelate epimerase |
| BSynechocystis sp. (strain PCC 6803 / Kazusa) | SYNY303041 | DAPF_SYNY3 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain AS9601) | PROMS00969 | A2BR46 | Diaminopimelate epimerase COG253 Diaminopimelate epimerase [Amino acid transport and metabolism] |
| BProchlorococcus marinus (strain MIT 9211) | PROM400876 | A9BAE5 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain MIT 9215) | PROM201001 | A8G4T8 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain MIT 9301) | PROM000972 | A3PCW9 | Diaminopimelate epimerase COG253 Diaminopimelate epimerase [Amino acid transport and metabolism] |
| BProchlorococcus marinus (strain MIT 9303) | PROM301486 | A2C9T8 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain MIT 9312) | PROM900970 | Q31AX3 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain MIT 9313) | PROMM00854 | DAPF_PROMM | Diaminopimelate epimerase Alternative locus ID:P9313_08441 putative assignment |
| BProchlorococcus marinus (strain MIT 9515) | PROM500964 | A2BWL6 | Diaminopimelate epimerase COG253 Diaminopimelate epimerase [Amino acid transport and metabolism] |
| BProchlorococcus marinus (strain NATL1A) | PROM100985 | DAPF_PROM1 | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain NATL2A) | PROMT00938 | DAPF_PROMT | Diaminopimelate epimerase |
| BProchlorococcus marinus (strain SARG / CCMP1375 / SS120) | PROMA00946 | Q7VBZ4 | Diaminopimelate epimerase |
| BProchlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) | PROMP01008 | Q7V1I3 | Diaminopimelate epimerase |
| BCyanobium gracile (strain ATCC 27147 / PCC 6307) | CYAGP00544 | K9P4Y7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) | SYNP602167 | DAPF_SYNP6 | diaminopimelate epimerase |
| BSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) | SYNP201614 | DAPF_SYNP2 | Diaminopimelate epimerase |
| BSynechococcus sp. (strain ATCC 29403 / PCC 7335) | SYNS702589 | B4WKJ6 | - |
| BSynechococcus sp. (strain CC9311) | SYNS301331 | Q0IAE7 | Diaminopimelate epimerase |
| BSynechococcus sp. (strain CC9605) | SYNSC01338 | Q3AJV7 | diaminopimelate epimerase |
| BSynechococcus sp. (strain CC9902) | SYNS901096 | Q3AXV6 | diaminopimelate epimerase |
| BSynechococcus sp. (strain JA-2-3B'a(2-13)) | SYNJB01327 | DAPF_SYNJB | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BSynechococcus sp. (strain JA-3-3Ab) | SYNJA01248 | DAPF_SYNJA | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BSynechococcus sp. (strain RCC307) | SYNR301189 | A5GT84 | Diaminopimelate epimerase |
| BSynechococcus sp. (strain WH7803) | SYNPW01260 | A5GL73 | Diaminopimelate epimerase |
| BSynechococcus sp. (strain WH8102) | SYNPX01253 | Q7U6T2 | Diaminopimelate epimerase |
| BThermosynechococcus elongatus (strain BP-1) | THEEB02265 | DAPF_THEEB | Diaminopimelate epimerase |
| BCalditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) | CALNY01789 | E4TGK2 | Diaminopimelate epimerase |
| BDeferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) | DEFDS00213 | D3PAV2 | Diaminopimelate epimerase |
| BDenitrovibrio acetiphilus (strain DSM 12809 / N2460) | DENA202385 | D4H4C1 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: dal:Dalk_0413 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BFlexistipes sinusarabici (strain DSM 4947 / MAS 10) | FLESM00630 | F8E3Q8 | Diaminopimelate epimerase |
| BDictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) | DICT600608 | B5YD87 | Diaminopimelate epimerase |
| BDictyoglomus turgidum (strain Z-1310 / DSM 6724) | DICTD00719 | B8DZX7 | Diaminopimelate epimerase |
| BElusimicrobium minutum (strain Pei191) | ELUMP01000 | DAPF_ELUMP | Diaminopimelate epimerase |
| BUncultured termite group 1 bacterium phylotype Rs-D17 | UNCTG00634 | B1GYN2 | Diaminopimelate epimerase |
| BFibrobacter succinogenes (strain ATCC 19169 / S85) | FIBSS01789 | C9RS69 | Diaminopimelate epimerase |
| BAlicyclobacillus acidocaldarius (strain Tc-4-1) | ALIAT01888 | F8IE63 | diaminopimelate epimerase |
| BAlicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-1A) | ALIAD01817 | C8WXU3 | Diaminopimelate epimerase |
| BKyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) | KYRT201339 | D5WP68 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: mta:Moth_0888 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BAnoxybacillus flavithermus (strain DSM 21510 / WK1) | ANOFW02368 | B7GKM1 | Diaminopimelate epimerase |
| BBacillus amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC 11601 / NBRC 15535 / NRRL B-14393) | BACAS02999 | CBI44146.1 | diaminopimelate epimerase |
| BBacillus anthracis | BACAN04685 | DAPF_BACAN | Diaminopimelate epimerase |
| BBacillus anthracis (strain A0248) | BACAA04523 | DAPF_BACAA | Diaminopimelate epimerase |
| BBacillus anthracis (strain CDC 684 / NRRL 3495) | BACAC05025 | DAPF_BACAC | Diaminopimelate epimerase |
| BBacillus atrophaeus (strain 1942) | BACA102743 | A0A0H3E5U3 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) | BACCJ03344 | E6U2D5 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: gka:GK2957 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBacillus cereus (strain 03BB102) | BACC304834 | DAPF_BACC3 | Diaminopimelate epimerase |
| BBacillus cereus (strain AH187) | BACC704820 | DAPF_BACC7 | Diaminopimelate epimerase |
| BBacillus cereus (strain AH820) | BACC004917 | DAPF_BACC0 | Diaminopimelate epimerase |
| BBacillus cereus (strain ATCC 10987 / NRS 248) | BACC105022 | DAPF_BACC1 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BBacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) | BACCR04687 | DAPF_BACCR | Diaminopimelate epimerase |
| BBacillus cereus (strain B4264) | BACC404867 | DAPF_BACC4 | Diaminopimelate epimerase |
| BBacillus cereus (strain G9842) | BACC204933 | DAPF_BACC2 | Diaminopimelate epimerase |
| BBacillus cereus (strain Q1) | BACCQ04600 | B9J3D8 | Diaminopimelate epimerase |
| BBacillus cereus (strain ZK / E33L) | BACCZ04620 | DAPF_BACCZ | diaminopimelate epimerase |
| BBacillus cereus var. anthracis (strain CI) | BACAI04648 | D8H0N1 | diaminopimelate epimerase |
| BBacillus clausii (strain KSM-K16) | BACSK02920 | Q5WDU2 | diaminopimelate epimerase |
| BBacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) | BACCN03369 | DAPF_BACCN | Diaminopimelate epimerase |
| BBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) | BACHD03356 | DAPF_BACHD | Diaminopimelate epimerase |
| BBacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) | BACLD03458 | DAPF_BACLD | diaminopimelate epimerase DapF |
| BBacillus megaterium (strain ATCC 12872 / QMB1551) | BACMQ04816 | D5DV76 | diaminopimelate epimerase |
| BBacillus megaterium (strain DSM 319) | BACMD04812 | D5DM00 | diaminopimelate epimerase |
| BBacillus pseudofirmus (strain OF4) | BACPE03284 | D3FYZ9 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBacillus pumilus (strain SAFR-032) | BACP202825 | DAPF_BACP2 | Diaminopimelate epimerase |
| BBacillus subtilis (strain BSn5) | BACST01384 | ADV94021.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) | BACPZ03105 | E0U0M8 | diaminopimelate epimerase |
| BBacillus subtilis subsp. spizizenii (strain TU-B-10) | BACPT03241 | G4P0A8 | diaminopimelate epimerase |
| BBacillus subtilis (strain 168) | BACSU03329 | DAPF_BACSU | diaminopimelate epimerase Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 14627808, 16723397; Product type e: enzyme |
| BBacillus thuringiensis (strain Al Hakam) | BACAH04242 | DAPF_BACAH | diaminopimelate epimerase |
| BBacillus thuringiensis subsp. finitimus (strain YBT-020) | BACT004853 | F0PNX7 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBacillus thuringiensis subsp. konkukian (strain 97-27) | BACHK04570 | DAPF_BACHK | Diaminopimelate epimerase |
| BBacillus thuringiensis (strain BMB171) | BACT104516 | ADH09359.1 | diaminopimelate epimerase |
| BBacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) | BACVZ02810 | DAPF_BACVZ | DapF |
| BBacillus weihenstephanensis (strain KBAB4) | BACWK04637 | DAPF_BACWK | Diaminopimelate epimerase |
| BGeobacillus kaustophilus (strain HTA426) | GEOKA02931 | DAPF_GEOKA | diaminopimelate epimerase |
| BGeobacillus sp. (strain WCH70) | GEOSW02515 | DAPF_GEOSW | Diaminopimelate epimerase |
| BGeobacillus sp. (strain Y4.1MC1) | GEOS000503 | A0A0F6BIW9 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: gwc:GWCH70_2888 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BGeobacillus sp. (strain Y412MC61) | GEOSY02863 | ACX79593.1 | Diaminopimelate epimerase |
| BGeobacillus thermodenitrificans (strain NG80-2) | GEOTN02844 | DAPF_GEOTN | Diaminopimelate epimerase |
| BOceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) | OCEIH02347 | DAPF_OCEIH | diaminopimelate epimerase CDS_ID OB2354 |
| BGeobacillus thermoglucosidasius (strain C56-YS93) | GEOTC00516 | AEH46618.1 | diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; KEGG: gmc:GY4MC1_0538 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) | LISIN02103 | DAPF_LISIN | Diaminopimelate epimerase |
| BListeria ivanovii (strain ATCC BAA-678 / PAM 55) | LISIP02005 | G2ZD31 | Putative diaminopimelate epimerase Similar to diaminopimelate epimerase |
| BListeria monocytogenes serotype 1/2a (strain 08-5923) | LISM202161 | ADB72012.1 | diaminopimelate epimerase |
| BListeria monocytogenes serotype 1/2a (strain 10403S) | LISM401978 | A0A0H3GEB0 | diaminopimelate epimerase |
| BListeria monocytogenes serotype 4a (strain HCC23) | LISMH00532 | DAPF_LISMH | Diaminopimelate epimerase |
| BListeria monocytogenes serotype 4a (strain L99) | LISML02069 | CAR84773.1 | Diaminopimelate epimerase |
| BListeria monocytogenes serotype 4a (strain M7) | LISMM02102 | A0A0E0UXN6 | diaminopimelate epimerase |
| BListeria monocytogenes serotype 4b (strain CLIP80459) | LISMC01998 | DAPF_LISMC | Putative diaminopimelate epimerase |
| BListeria monocytogenes serotype 4b (strain F2365) | LISMF02022 | DAPF_LISMF | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BListeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) | LISMO02012 | DAPF_LISMO | Diaminopimelate epimerase |
| BListeria seeligeri serovar 1/2b (strain ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) | LISSS02000 | CBH28151.1 | |
| BListeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) | LISW602033 | DAPF_LISW6 | DapF protein |
| BBrevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN04055 | C0ZH35 | Diaminopimelate epimerase |
| BGeobacillus sp. (strain Y412MC10) | GEOS401914 | D3E5S4 | diaminopimelate epimerase KEGG: pjd:Pjdr2_3768 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BPaenibacillus mucilaginosus (strain KNP414) | PAEMK05763 | F8FC40 | DapF Diaminopimelate epimerase |
| BPaenibacillus polymyxa (strain E681) | PAEP602834 | E0REU7 | Diaminopimelate epimerase 2 (DAP epimerase 2) TIGRFAMsMatches:TIGR00652; COGMatches:COG0253; PfamMatches:PF01678; PrositeMatches:PS01326; go_process: lysine biosynthesis via diaminopimelate (GO:0009089) |
| BPaenibacillus polymyxa (strain SC2) | PAEPS03271 | E3E874 | Diaminopimelate epimerase |
| BPaenibacillus sp. (strain JDR-2) | PAESJ03715 | C6D4H0 | Diaminopimelate epimerase |
| BPaenibacillus terrae (strain HPL-003) | PAETH04821 | G7VVB9 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BThermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) | THECK02012 | L0EEU0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSolibacillus silvestris (strain StLB046) | SOLSS02092 | F2F4W0 | diaminopimelate epimerase |
| BBacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) | BACIE02339 | D6XWT0 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: diaminopimelate epimerase family protein ; K01778 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCarnobacterium sp. (strain 17-4) | CARS100754 | F4BP11 | diaminopimelate epimerase |
| BEnterococcus faecalis (strain 62) | ENTF600742 | ADX79041.1 | diaminopimelate epimerase TIGR_role_id=71; COG:COG0253 |
| BEnterococcus faecalis (strain ATCC 47077 / OG1RF) | ENTFO00349 | AEA93036.1 | diaminopimelate epimerase COG: COG0253; Pfam: PF01678; InterPro: IPR001653 |
| BEnterococcus faecalis (strain ATCC 700802 / V583) | ENTFA00432 | DAPF_ENTFA | Diaminopimelate epimerase |
| BEnterococcus faecium (strain Aus0004) | ENTFU00458 | AFC62552.1 | diaminopimelate epimerase |
| BLactobacillus acidophilus (strain 30SC) | LACA300812 | ADZ07018.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BLactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) | LACAC00799 | Q5FKR4 | diaminopimelate epimerase |
| BLactobacillus amylovorus (strain GRL 1112) | LACAR00842 | E4SI66 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BLactobacillus amylovorus (strain GRL 1118) | LACAL00816 | F2LZ14 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BLactobacillus casei (strain BD-II) | LACCD00099 | A0A125YCC7 | Diaminopimelate epimerase family protein |
| BLactobacillus casei (strain BL23) | LACCB00099 | CAQ65234.1 | Diaminopimelate epimerase |
| BLactobacillus casei (strain LC2W) | LACCC00090 | AEA52427.1 | Diaminopimelate epimerase family protein |
| BLactobacillus casei (strain Zhang) | LACCZ00106 | ADK17408.1 | Diaminopimelate epimerase |
| BLactobacillus crispatus (strain ST1) | LACCS00854 | D5H2T4 | Diaminopimelate epimerase |
| BLactobacillus delbrueckii subsp. bulgaricus (strain 2038) | LACD200910 | F0K2F7 | Diaminopimelate epimerase |
| BLactobacillus delbrueckii subsp. bulgaricus (strain ND02) | LACDN01006 | E4SZT6 | Diaminopimelate epimerase |
| BLactobacillus fermentum (strain NBRC 3956 / LMG 18251) | LACF300838 | B2GC06 | Diaminopimelate epimerase |
| BLactobacillus helveticus (strain DPC 4571) | LACH400707 | A8YUS7 | Diaminopimelate epimerase |
| BLactobacillus johnsonii (strain FI9785) | LACJF00972 | D0R4B9 | |
| BLactobacillus kefiranofaciens (strain ZW3) | LACKZ00793 | AEG40494.1 | Diaminopimelate epimerase |
| BLactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) | LACP300093 | Q03CV8 | Diaminopimelate epimerase |
| BLactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) | LACPL01824 | DAPF_LACPL | Diaminopimelate epimerase |
| BLactobacillus plantarum (strain JDM1) | LACPJ01826 | ACT62716.1 | Diaminopimelate epimerase |
| BLactobacillus plantarum (strain ST-III) | LACPS01786 | ADN99017.1 | diaminopimelate epimerase |
| BLactobacillus reuteri (strain ATCC 55730 / SD2112) | LACRS01753 | F8DNK0 | diaminopimelate epimerase COG: COG0253 |
| BLactobacillus reuteri (strain DSM 20016) | LACRD00589 | A5VJ53 | Diaminopimelate epimerase |
| BLactobacillus reuteri (strain JCM 1112) | LACRJ00578 | BAG25106.1 | diaminopimelate epimerase |
| BLactobacillus rhamnosus (strain ATCC 53103 / GG) | LACRG00111 | CAR86009.1 | Diaminopimelate epimerase |
| BLactobacillus rhamnosus (strain Lc 705) | LACRL00106 | CAR88945.1 | Diaminopimelate epimerase |
| BLactobacillus ruminis (strain ATCC 27782 / RF3) | LACRR01195 | G2SPT9 | diaminopimelate epimerase |
| BLactobacillus salivarius (strain CECT 5713) | LACSC00622 | ADJ78987.1 | Diaminopimelate epimerase |
| BLactobacillus salivarius (strain UCC118) | LACS100837 | DAPF_LACS1 | Diaminopimelate epimerase COG0253 [E] Diaminopimelate epimerase |
| BPediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w) | PEDPA00134 | Q03HS7 | Diaminopimelate epimerase |
| BAlkaliphilus metalliredigens (strain QYMF) | ALKMQ02560 | DAPF_ALKMQ | Diaminopimelate epimerase |
| BAlkaliphilus oremlandii (strain OhILAs) | ALKOO01391 | DAPF_ALKOO | Diaminopimelate epimerase |
| BClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) | CLOAB02584 | DAPF_CLOAB | Diaminopimelate epimerase |
| BClostridium acetobutylicum (strain EA 2018) | CLOAE02625 | ADZ21670.1 | diaminopimelate epimerase |
| BClostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) | CLOB801577 | A6LTU4 | Diaminopimelate epimerase |
| BClostridium botulinum (strain H04402 065 / Type A5) | CLOB001892 | CBZ03733.1 | diaminopimelate epimerase |
| BClostridium botulinum (strain ATCC 19397 / Type A) | CLOB101760 | ABS34591.1 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) | CLOBH01898 | A5I336 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Kyoto / Type A2) | CLOBJ01975 | C1FPD9 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Loch Maree / Type A3) | CLOBM01970 | B1KTZ0 | Diaminopimelate epimerase |
| BClostridium botulinum (strain 657 / Type Ba4) | CLOB601950 | ACQ54134.1 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Eklund 17B / Type B) | CLOBB02350 | B2TRP9 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Okra / Type B1) | CLOBK01847 | B1IMS5 | Diaminopimelate epimerase |
| BClostridium botulinum (strain Alaska E43 / Type E3) | CLOBA02106 | ACD53052.1 | Diaminopimelate epimerase |
| BClostridium botulinum (strain 230613 / Type F) | CLOB201794 | ADF99647.1 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BClostridium botulinum (strain Langeland / NCTC 10281 / Type F) | CLOBL01865 | A7GEM4 | Diaminopimelate epimerase |
| BClostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) | CLOC701541 | D9SWZ2 | diaminopimelate epimerase KEGG: cac:CAC2624 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BClostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) | CLOK501148 | A5N7G4 | DapF |
| BClostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) | CLOLD01023 | D8GQM1 | diaminopimelate epimerase |
| BClostridium novyi (strain NT) | CLONN01046 | A0Q076 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BClostridium perfringens (strain 13 / Type A) | CLOPE01846 | DAPF_CLOPE | Diaminopimelate epimerase |
| BClostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) | CLOP102052 | A0A0H2YQG3 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BClostridium perfringens (strain SM101 / Type A) | CLOPS01767 | Q0SRX8 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BClostridium sp. (strain SY8519) | CLOSS00104 | F7V7G2 | diaminopimelate epimerase |
| BSulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) | SULAD02387 | G8TW56 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: geb:GM18_0436 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BSulfobacillus acidophilus (strain TPY) | SULAT01081 | F8I1S5 | Diaminopimelate epimerase |
| BThermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) | THEM700896 | E6SJ95 | |
| BEubacterium limosum (strain KIST612) | EUBLK03262 | E3GFG2 | hypothetical protein |
| BEubacterium eligens (strain ATCC 27750 / VPI C15-48) | EUBE200402 | C4Z3I0 | Diaminopimelate epimerase |
| BHeliobacterium modesticaldum (strain ATCC 51547 / Ice1) | HELMI01991 | DAPF_HELMI | Diaminopimelate epimerase |
| BButyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) | BUTPB02360 | E0RZK5 | Diaminopimelate epimerase |
| BCellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) | CELLD04124 | F2JNN0 | diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; KEGG: cth:Cthe_3100 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BClostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) | CLOSW01222 | D9R8C5 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: dds:Ddes_1150 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BLachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) | LACP700624 | A9KJ18 | Diaminopimelate epimerase |
| BRoseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) | ROSHA02194 | G2SXH3 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BAgathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) | AGARV01352 | DAPF_AGARV | Diaminopimelate epimerase |
| BOscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) | OSCVS00978 | G4KW12 | diaminopimelate epimerase |
| BDesulforudis audaxviator (strain MP104C) | DESAP01519 | DAPF_DESAP | Diaminopimelate epimerase |
| BDesulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) | DESDL02550 | L0F8L9 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase |
| BDesulfitobacterium hafniense (strain DCB-2 / DSM 10664) | DESHD03822 | DAPF_DESHD | Diaminopimelate epimerase |
| BDesulfitobacterium hafniense (strain Y51) | DESHY02710 | Q24TW0 | hypothetical protein similarity to COG0253 Diaminopimelate epimerase(Evalue: 3E-76) |
| BDesulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) | DESAJ03425 | I4D9V7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) | DESMD03517 | J7J2V7 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) | DESOD04375 | G7WG68 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) | DESAS02141 | C8W080 | Diaminopimelate epimerase |
| BDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) | DESK701229 | F6CKU4 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: pth:PTH_1800 diaminopimelate epimerase |
| BDesulfotomaculum nigrificans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) | DESCC01201 | F6B4M1 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: drm:Dred_1694 diaminopimelate epimerase |
| BDesulfotomaculum reducens (strain MI-1) | DESRM01622 | DAPF_DESRM | Diaminopimelate epimerase |
| BDesulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) | DESRL02232 | F6DMA2 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: drm:Dred_1694 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) | PELTS01781 | DAPF_PELTS | Diaminopimelate epimerase |
| BSyntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) | SYNGF00620 | F0T0I6 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: dsy:DSY2743 hypothetical protein; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThermincola potens (strain JR) | THEPJ01738 | D5X7U3 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: pth:PTH_1800 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BAcetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) | ACESD01851 | E3PSX9 | Diaminopimelate epimerase (DAP epimerase) |
| BPeptoclostridium difficile (strain 630) | PEPD602711 | Q182T1 | Diaminopimelate epimerase (DAP epimerase) |
| BPeptoclostridium difficile (strain R20291) | PEPDR02477 | C9YPG3 | diaminopimelate epimerase |
| BEthanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) | ETHHY00866 | E6U3R1 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: dds:Ddes_1150 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BClostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) | CLOTH02964 | DAPF_CLOTH | Diaminopimelate epimerase |
| BClostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8) | CLOTL00628 | ADU73731.1 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: mmq:MmarC5_0724 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BClostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) | CLOCD02921 | G8LWS8 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BRuminococcus champanellensis (strain DSM 18848 / JCM 17042 / KCTC 15320 / 18P13) | RUMC101599 | D4LE47 | diaminopimelate epimerase |
| BSymbiobacterium thermophilum (strain T / IAM 14863) | SYMTH00232 | Q67SX4 | Diaminopimelate epimerase |
| BSyntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) | SYNLT00820 | D7CLP5 | Diaminopimelate epimerase |
| BHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) | HALOH01130 | DAPF_HALOH | Diaminopimelate epimerase |
| BAcetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) | ACEAZ01806 | D9QS71 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653:IPR018510; KEGG: dae:Dtox_2322 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: A5D193 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BHalobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) | HALHC00888 | L0K8S0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BNatranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) | NATTJ01845 | DAPF_NATTJ | Diaminopimelate epimerase |
| BCaldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) | CALS401382 | DAPF_CALS4 | Diaminopimelate epimerase |
| BCarboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) | CARHZ01449 | DAPF_CARHZ | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BMoorella thermoacetica (strain ATCC 39073 / JCM 9320) | MOOTA00853 | DAPF_MOOTA | diaminopimelate epimerase |
| BThermoanaerobacter italicus (strain DSM 9252 / Ab9) | THEIA01240 | D3T2Y1 | Diaminopimelate epimerase |
| BThermoanaerobacter mathranii subsp. mathranii (strain DSM 11426 / CIP 108742 / A3) | THEM301295 | D7APG8 | Diaminopimelate epimerase |
| BThermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP301269 | B0KA18 | Diaminopimelate epimerase |
| BThermoanaerobacter sp. (strain X513) | THESX01041 | ADN54739.1 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: tpd:Teth39_1327 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BThermoanaerobacter sp. (strain X514) | THEPX01702 | B0K299 | Diaminopimelate epimerase |
| BCaldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) | CALBD02007 | B9MLW7 | diaminopimelate epimerase KEGG: csc:Csac_1315 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCaldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) | CALH100605 | E4QD86 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: csc:Csac_1315 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCaldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) | CALKI00415 | E4S991 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: ate:Athe_2115 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCaldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) | CALK200494 | E4SED0 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: ate:Athe_2115 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCaldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) | CALOO01779 | D9TG44 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: ate:Athe_2115 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BCaldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) | CALOW01702 | E4Q4X7 | Diaminopimelate epimerase |
| BCaldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) | CALS801210 | A4XJ32 | Diaminopimelate epimerase |
| BThermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) | THESW01675 | I3VW23 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: txy:Thexy_1400 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BThermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) | THETC01433 | D9TNS5 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: tpd:Teth39_1327 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BThermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) | THEXL01351 | F6BG88 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: ttm:Tthe_1534 diaminopimelate epimerase |
| BThermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) | THEOJ00964 | D9S303 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653:IPR018510; KEGG: cth:Cthe_3100 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) | MAHA500352 | F3ZXS1 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510: IPR001653; KEGG: csc:Csac_1315 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAcidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) | ACIFV00325 | D2RNW2 | Diaminopimelate epimerase |
| BAcidaminococcus intestini (strain RyC-MR95) | ACIIR00017 | G4Q5X1 | diaminopimelate epimerase COG0253 |
| BSelenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) | SELRL01553 | I0GR97 | putative diaminopimelate epimerase |
| BSelenomonas sputigena (strain ATCC 35185 / DSM 20758 / VPI D19B-28) | SELS300353 | C9LXX1 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: mta:Moth_0888 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; IMG reference gene:2504585826; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) | VEIPT01561 | D1BPE4 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; KEGG: glo:Glov_3323 diaminopimelate epimerase |
| BIlyobacter polytropus (strain DSM 2926 / CuHBu1) | ILYPC02614 | E3HCN0 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: lba:Lebu_1359 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: B0A9Z1 Putative uncharacterized protein; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BLeptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b) | LEPBD01306 | C7NAR4 | Diaminopimelate epimerase |
| BSebaldella termitidis (strain ATCC 33386 / NCTC 11300) | SEBTE02918 | D1ANM8 | diaminopimelate epimerase KEGG: dat:HRM2_37680 DapF; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BStreptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) | STRM900953 | D1AYT7 | diaminopimelate epimerase KEGG: glo:Glov_3323 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BGemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) | GEMAT01608 | DAPF_GEMAT | diaminopimelate epimerase protein synonym: DAP epimerase |
| BIgnavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) | IGNAJ00787 | I0AHQ1 | Diaminopimelate epimerase |
| BMelioribacter roseus (strain JCM 17771 / P3M-2) | MELRP02263 | I6Z8N0 | diaminopimelate epimerase |
| BLeptospirillum ferrooxidans (strain C2-3) | LEPFC00233 | I0IL17 | putative diaminopimelate epimerase |
| BLeptospirillum ferriphilum (strain ML-04) | LEPFM00184 | J9Z8G5 | putative diaminopimelate epimerase |
| BThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) | THEYD01103 | B5YL43 | Diaminopimelate epimerase |
| BPhycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) | PHYMF03063 | I0IJ00 | diaminopimelate epimerase |
| BIsosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) | ISOPI00039 | E8R4P5 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: plm:Plim_0185 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSingulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) | SINAD02890 | L0DF30 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BPirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) | PIRSD03925 | D2R217 | diaminopimelate epimerase KEGG: gur:Gura_3911 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BPlanctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) | PLAL200184 | D5SNB0 | |
| BRubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) | RUBBR04536 | F0SPA1 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: plm:Plim_0185 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAcidithiobacillus caldus (strain SM-1) | ACICS00464 | F9ZSY9 | Diaminopimelate epimerase |
| BAsticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) | ASTEC00257 | E8RPB9 | diaminopimelate epimerase KEGG: ccs:CCNA_03800 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBrevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) | BRESC00457 | D9QKE7 | Diaminopimelate epimerase |
| BCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) | CAUST04066 | D5VQ30 | Diaminopimelate epimerase |
| BCaulobacter sp. (strain K31) | CAUSK04783 | DAPF_CAUSK | Diaminopimelate epimerase |
| BCaulobacter crescentus (strain ATCC 19089 / CB15) | CAUCR03637 | DAPF_CAUCR | Diaminopimelate epimerase |
| BCaulobacter crescentus (strain NA1000 / CB15N) | CAUCN03773 | DAPF_CAUCN | Diaminopimelate epimerase |
| BPhenylobacterium zucineum (strain HLK1) | PHEZH00127 | DAPF_PHEZH | Diaminopimelate epimerase |
| BMagnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) | MAGMM03568 | DAPF_MAGMM | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: rru:Rru_A1183 diaminopimelate epimerase |
| BParvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) | PARBH00710 | E0TEK5 | diaminopimelate epimerase |
| BPelagibacter sp. (strain IMCC9063) | PELSM00462 | F2I3G9 | diaminopimelate epimerase |
| BPelagibacter ubique (strain HTCC1062) | PELUB00254 | DAPF_PELUB | Diaminopimelate epimerase (DAP epimerase) |
| BBartonella bacilliformis (strain ATCC 35685 / KC583) | BARBK00019 | DAPF_BARBK | Diaminopimelate epimerase |
| BBartonella clarridgeiae (strain CIP 104772 / 73) | BARC701353 | E6YJL9 | Diaminopimelate epimerase |
| BBartonella grahamii (strain as4aup) | BARGA01662 | C6AB14 | diaminopimelate epimerase |
| BBartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) | BARHE01570 | DAPF_BARHE | Diaminopimelate epimerase |
| BBartonella quintana (strain Toulouse) | BARQU01291 | DAPF_BARQU | Diaminopimelate epimerase |
| BBartonella tribocorum (strain CIP 105476 / IBS 506) | BART101922 | DAPF_BART1 | Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase) (Q8FYF0 in Brucella suis),InterPro; Diaminopimelate epimerase hypothetical protein |
| BBartonella vinsonii subsp. berkhoffii (strain Winnie) | BARVW01412 | AGF76581.1 | diaminopimelate epimerase |
| BBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII903292 | DAPF_BEII9 | Diaminopimelate epimerase |
| BMethylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2) | METSB01808 | DAPF_METSB | Diaminopimelate epimerase |
| BBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) | BRADU00475 | DAPF_BRADU | Diaminopimelate epimerase |
| BBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB00352 | DAPF_BRASB | Diaminopimelate epimerase |
| BBradyrhizobium sp. (strain ORS 278) | BRASO00354 | DAPF_BRASO | Diaminopimelate epimerase |
| BNitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) | NITHX03340 | DAPF_NITHX | Diaminopimelate epimerase |
| BNitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) | NITWN02640 | Q3SNW2 | diaminopimelate epimerase |
| BOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) | OLICO00260 | DAPF_OLICO | Diaminopimelate epimerase |
| BOligotropha carboxidovorans (strain OM4) | OLICM00249 | AEI01409.1 | diaminopimelate epimerase DapF |
| BRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) | RHOPA00251 | DAPF_RHOPA | Diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain BisA53) | RHOP500318 | DAPF_RHOP5 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: rpa:RPA0250 diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain BisB18) | RHOPB00211 | DAPF_RHOPB | diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain BisB5) | RHOPS00509 | DAPF_RHOPS | Diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain DX-1) | RHOPX00379 | E6VIZ5 | diaminopimelate epimerase KEGG: nwi:Nwi_2776 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain HaA2) | RHOP200358 | DAPF_RHOP2 | diaminopimelate epimerase |
| BRhodopseudomonas palustris (strain TIE-1) | RHOPT00249 | DAPF_RHOPT | Diaminopimelate epimerase |
| BBrucella abortus (strain 2308) | BRUA201920 | DAPF_BRUA2 | Diaminopimelate epimerase |
| BBrucella abortus (strain S19) | BRUA101722 | DAPF_BRUA1 | Diaminopimelate epimerase |
| BBrucella abortus biovar 1 (strain 9-941) | BRUAB01786 | DAPF_BRUAB | DapF, diaminopimelate epimerase similar to BR1932, diaminopimelate epimerase |
| BBrucella canis (strain ATCC 23365 / NCTC 10854) | BRUC201846 | DAPF_BRUC2 | Diaminopimelate epimerase |
| BBrucella melitensis (strain M5-90) | BRUM501904 | ADZ87861.1 | diaminopimelate epimerase |
| BBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) | BRUME00133 | DAPF_BRUME | Diaminopimelate epimerase |
| BBrucella melitensis biotype 2 (strain ATCC 23457) | BRUMB01809 | DAPF_BRUMB | Diaminopimelate epimerase |
| BBrucella microti (strain CCM 4915) | BRUMC01857 | C7LEG1 | Diaminopimelate epimerase |
| BBrucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) | BRUO201655 | DAPF_BRUO2 | Diaminopimelate epimerase |
| BBrucella suis biovar 1 (strain 1330) | BRUSU01868 | DAPF_BRUSU | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BBrucella suis (strain ATCC 23445 / NCTC 10510) | BRUSI01660 | DAPF_BRUSI | diaminopimelate epimerase GO_function: diaminopimelate epimerase activity [GO ID 0008837]; GO_process: lysine biosynthetic process via diaminopimelate [GO ID 0009089] |
| BOchrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168) | OCHA400910 | DAPF_OCHA4 | Diaminopimelate epimerase |
| BHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) | HYPDA03217 | D8JXC7 | Diaminopimelate epimerase |
| BHyphomicrobium sp. (strain MC1) | HYPSM04580 | F8JE09 | Diaminopimelate epimerase |
| BPelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2) | PELHB03219 | G4R700 | diaminopimelate epimerase |
| BRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) | RHOVT02146 | E3I3B5 | diaminopimelate epimerase KEGG: bja:bll0477 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BMethylobacterium extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) | METEA02696 | C5AUQ9 | Diaminopimelate epimerase (DAP epimerase) Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| BMethylobacterium extorquens (strain CM4 / NCIMB 13688) | METC402802 | DAPF_METC4 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: mex:Mext_2720 diaminopimelate epimerase |
| BMethylobacterium extorquens (strain DSM 6343 / CIP 106787 / DM4) | METED03302 | C7C8I1 | Diaminopimelate epimerase |
| BMethylobacterium extorquens (strain PA1) | METEP02675 | DAPF_METEP | Diaminopimelate epimerase |
| BMethylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) | METNO00175 | DAPF_METNO | Diaminopimelate epimerase |
| BMethylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) | METPB02788 | DAPF_METPB | Diaminopimelate epimerase |
| BMethylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) | METRJ05229 | B1LY98 | Diaminopimelate epimerase |
| BMethylobacterium sp. (strain 4-46) | METS403420 | DAPF_METS4 | Diaminopimelate epimerase |
| BMethylocystis sp. (strain SC2) | METSZ00516 | J7Q3L3 | Diaminopimelate epimerase |
| BChelativorans sp. (strain BNC1) | CHESB03355 | DAPF_CHESB | diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: bmb:BruAb1_1908 DapF, diaminopimelate epimerase |
| BMesorhizobium australicum (strain HAMBI 3006 / LMG 24608 / WSM2073) | MESAW01023 | L0KG69 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMesorhizobium ciceri biovar biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) | MESCW00971 | E8TIV0 | |
| BRhizobium loti (strain MAFF303099) | RHILO03319 | DAPF_RHILO | diaminopimelate epimerase |
| BAgrobacterium sp. (strain H13-3) | AGRSH02609 | F0L423 | Diaminopimelate epimerase involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate |
| BAgrobacterium fabrum (strain C58 / ATCC 33970) | AGRFC02621 | DAPF_AGRFC | Diaminopimelate epimerase |
| BAgrobacterium radiobacter (strain K84 / ATCC BAA-868) | AGRRK03326 | DAPF_AGRRK | Diaminopimelate epimerase protein |
| BLiberibacter asiaticus (strain psy62) | LIBAP00489 | C6XFN0 | Diaminopimelate epimerase |
| BRhizobium etli (strain CFN 42 / ATCC 51251) | RHIEC03869 | DAPF_RHIEC | diaminopimelate epimerase protein similar to dapF (AGR_C_4886p) [Agrobacterium tumefaciens] and dapF (SMc03856) [Sinorhizobium meliloti]; Similar to entrez-protein:Q8UC03; Putative location:bacterial cytoplasm Psort-Score: 0.1439; GO_function: GO:0016853 - isomerase activity; GO_function: GO:0008837 - diaminopimelate epimerase activity; GO_process: GO:0009089 - lysine biosynthesis via diaminopimelate; GO_process: GO:0009085 - lysine biosynthesis |
| BRhizobium etli (strain CIAT 652) | RHIE604176 | B3PR12 | Diaminopimelate epimerase protein |
| BRhizobium leguminosarum bv. trifolii (strain WSM1325) | RHILS03991 | C6AZ03 | Diaminopimelate epimerase |
| BRhizobium leguminosarum bv. trifolii (strain WSM2304) | RHILW03699 | DAPF_RHILW | Diaminopimelate epimerase |
| BRhizobium leguminosarum bv. viciae (strain 3841) | RHIL304529 | Q1MAK9 | putative diaminopimelate epimerase similarity:fasta; with=UniProt:DAPF_ECOLI (EMBL:ECXERC); Escherichia coli.; dapF; Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase).; length=274; id 32.509; 283 aa overlap; query 8-286; subject 1-272 similarity:fasta; with=UniProt:DAPF_AGRT5 (EMBL:AE008182); Agrobacterium tumefaciens (strain C58/ATCC 33970).; dapF; Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase).; length=299; id 78.840; 293 aa overlap; query 4-296; subject 1-292 |
| BRhizobium fredii (strain HH103) | RHIFH03178 | G9A2H7 | |
| BSinorhizobium fredii (strain NBRC 101917 / NGR234) | SINFN03122 | C3MAG8 | Diaminopimelate epimerase |
| BRhizobium meliloti (strain 1021) | RHIME03217 | Q92L46 | Probable diaminopimelate epimerase |
| BSinorhizobium meliloti (strain AK83) | SINMK03148 | AEG54943.1 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: rhi:NGR_c32280 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BSinorhizobium meliloti (strain BL225C) | SINMB02936 | A0A0E0UHI8 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: rhi:NGR_c32280 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BSinorhizobium meliloti (strain SM11) | SINMM03261 | F7X176 | Diaminopimelate epimerase |
| BSinorhizobium medicae (strain WSM419) | SINMW03035 | A6UE39 | Diaminopimelate epimerase |
| BParvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) | PARL101357 | A7HT02 | Diaminopimelate epimerase |
| BAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) | AZOC503702 | A8IN67 | Diaminopimelate epimerase |
| BStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) | STAND03284 | D7A8U5 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: azc:AZC_3710 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BXanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) | XANP200378 | A7ICC6 | Diaminopimelate epimerase |
| BHirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) | HIRBI00108 | C6XKY1 | Diaminopimelate epimerase |
| BHyphomonas neptunium (strain ATCC 15444) | HYPNA03460 | Q0BWE3 | Diaminopimelate epimerase |
| BDinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) | DINSH03194 | A8LMN6 | Diaminopimelate epimerase |
| BJannaschia sp. (strain CCS1) | JANSC00317 | Q28VM7 | diaminopimelate epimerase |
| BKetogulonicigenium vulgare (strain WSH-001) | KETVW02495 | F9Y853 | Diaminopimelate epimerase |
| BKetogulonicigenium vulgare (strain Y25) | KETVY00287 | E3EYR0 | diaminopimelate epimerase |
| BParacoccus denitrificans (strain Pd 1222) | PARDP00377 | A1AZ15 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: sil:SPO0278 diaminopimelate epimerase |
| BPhaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / JCM 21319 / NBRC 16654 / NCIMB 13546 / BS107) | PHAIB03256 | I7DVD0 | diaminopimelate epimerase DapF |
| BPseudovibrio sp. (strain FO-BEG1) | PSEUV00538 | G8PM08 | Diaminopimelate epimerase |
| BRhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) | RHOCB03424 | D5ASV9 | Diaminopimelate epimerase |
| BRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) | RHOS402560 | DAPF_RHOS4 | diaminopimelate epimerase IMG reference gene:2512955969; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BRhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | RHOS502859 | A4WWV1 | Diaminopimelate epimerase |
| BRhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) | RHOS102558 | A3PMY1 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: rsp:RSP_0936 diaminopimelate epimerase |
| BRhodobacter sphaeroides (strain KD131 / KCTC 12085) | RHOSK02288 | B9KN64 | Diaminopimelate epimerase |
| BRoseobacter denitrificans (strain ATCC 33942 / OCh 114) | ROSDO00753 | Q16C03 | diaminopimelate epimerase |
| BRoseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) | ROSLO03861 | F7ZEN6 | diaminopimelate epimerase DapF |
| BRuegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) | RUEPO00268 | Q5LX66 | diaminopimelate epimerase identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BRuegeria sp. (strain TM1040) | RUEST02798 | Q1GCS5 | diaminopimelate epimerase |
| BAcetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) | ACEP302314 | C7JG03 | Diaminopimelate epimerase |
| BAcidiphilium cryptum (strain JF-5) | ACICJ02439 | DAPF_ACICJ | Diaminopimelate epimerase |
| BAcidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 / AIU301) | ACIMA02756 | F0J424 | diaminopimelate epimerase |
| BGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) | GLUDA02247 | A9HM33 | Putative diaminopimelate epimerase |
| BGluconobacter oxydans (strain 621H) | GLUOX01384 | DAPF_GLUOX | Diaminopimelate epimerase |
| BGranulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) | GRABC01499 | DAPF_GRABC | Diaminopimelate epimerase |
| BKomagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG 1693 / Kondo 51) | KOMMN02392 | G2I1T6 | diaminopimelate epimerase |
| BAzospirillum lipoferum (strain 4B) | AZOL400621 | G7Z9A9 | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme |
| BMagnetospirillum magneticum (strain AMB-1 / ATCC 700264) | MAGSA00215 | Q2WAV6 | Diaminopimelate epimerase |
| BRhodospirillum centenum (strain ATCC 51521 / SW) | RHOCS02131 | DAPF_RHOCS | Diaminopimelate epimerase |
| BRhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) | RHORT01179 | Q2RV61 | diaminopimelate epimerase |
| BTistrella mobilis (strain KA081020-065) | TISMK00168 | I3TGW9 | diaminopimelate epimerase |
| BAnaplasma marginale (strain Florida) | ANAMF00912 | B9KHB4 | diaminopimelate epimerase (dapF) psort: bacterial cytoplasm --- Certainty= 0.142(Affirmative); COG0253 DapF diaminopimelate epimerase |
| BAnaplasma marginale (strain St. Maries) | ANAMM00917 | AAV87112.1 | diaminopimelate epimerase COG0253 DapF diaminopimelate epimerase; GO_process: - 0009089 |
| BEhrlichia canis (strain Jake) | EHRCJ00026 | Q3YT78 | diaminopimelate epimerase |
| BEhrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) | EHRCR00046 | Q2GI52 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BEhrlichia ruminantium (strain Gardel) | EHRRG00021 | Q5FF25 | Diaminopimelate epimerase Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERWE_CDS_00210 |
| BEhrlichia ruminantium (strain Welgevonden) | EHRRW00003 | CAH57741.1 | diaminopimelate epimerase dapF | diaminopimelate epimerase | len: 265 aa | Similar to many e.g. DAPF_ECOLI P08885 Diaminopimelate epimerase (274 aa) from Escherichia coli, fasta scores: E(): 2.3e-29, 33.824% identity in 272 aa overlap | Contains 2 Pfam matches to entry PF01678 DAP_epimerase, Diaminopimelate epimerase | Contains PS01326 Diaminopimelate epimerase signature |
| BWolbachia sp. subsp. Brugia malayi (strain TRS) | WOLTR00514 | DAPF_WOLTR | Diaminopimelate epimerase |
| BWolbachia pipientis subsp. Culex pipiens (strain wPip) | WOLPP00838 | B3CME7 | Diaminopimelate epimerase |
| BWolbachia pipientis wMel | WOLPM01049 | Q73FW5 | Diaminopimelate epimerase |
| BWolbachia sp. subsp. Drosophila simulans (strain wRi) | WOLWR00887 | DAPF_WOLWR | Diaminopimelate epimerase |
| BRickettsia africae (strain ESF-5) | RICAE00463 | DAPF_RICAE | Diaminopimelate epimerase |
| BRickettsia akari (strain Hartford) | RICAH00573 | DAPF_RICAH | Diaminopimelate epimerase |
| BRickettsia amblyommatis (strain GAT-30V) | RICAG00613 | H8K585 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia australis (strain Cutlack) | RICAC00815 | H8K7N8 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia bellii (strain OSU 85-389) | RICB800769 | DAPF_RICB8 | Diaminopimelate epimerase |
| BRickettsia bellii (strain RML369-C) | RICBR00638 | DAPF_RICBR | Diaminopimelate epimerase |
| BRickettsia canadensis (strain McKiel) | RICCK00636 | DAPF_RICCK | Diaminopimelate epimerase |
| BRickettsia conorii (strain ATCC VR-613 / Malish 7) | RICCN00579 | DAPF_RICCN | Diaminopimelate epimerase |
| BRickettsia felis (strain ATCC VR-1525 / URRWXCal2) | RICFE00620 | DAPF_RICFE | Diaminopimelate epimerase |
| BRickettsia japonica (strain ATCC VR-1363 / YH) | RICJY00432 | G4KN02 | diaminopimelate epimerase |
| BRickettsia massiliae (strain Mtu5) | RICM500422 | DAPF_RICM5 | Diaminopimelate epimerase |
| BRickettsia montanensis (strain OSU 85-930) | RICMS01215 | H8KA79 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia parkeri (strain Portsmouth) | RICPT00578 | AFC74773.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia peacockii (strain Rustic) | RICPU00671 | DAPF_RICPU | Diaminopimelate epimerase |
| BRickettsia philipii (strain 364D) | RICP300588 | H6PTL6 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia prowazekii (strain Madrid E) | RICPR00399 | DAPF_RICPR | Diaminopimelate epimerase |
| BRickettsia prowazekii (strain Rp22) | RICPP00430 | D5AX04 | Diaminopimelate epimerase |
| BRickettsia rhipicephali (strain 3-7-female6-CWPP) | RICR300627 | AFC72344.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BRickettsia rickettsii (strain Iowa) | RICRO00617 | DAPF_RICRO | diaminopimelate epimerase |
| BRickettsia rickettsii (strain Sheila Smith) | RICRS00589 | DAPF_RICRS | Diaminopimelate epimerase |
| BRickettsia slovaca (strain 13-B) | RICS100499 | AEV92196.1 | Diaminopimelate epimerase |
| BRickettsia typhi (strain ATCC VR-144 / Wilmington) | RICTY00388 | DAPF_RICTY | Diaminopimelate epimerase |
| BErythrobacter litoralis (strain HTCC2594) | ERYLH00779 | DAPF_ERYLH | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BNovosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) | NOVAD01393 | Q2G8H7 | Diaminopimelate epimerase |
| BSphingobium japonicum (strain NBRC 101211 / UT26S) | SPHJU02722 | D4Z4Q2 | diaminopimelate epimerase |
| BSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) | SPHWW02896 | DAPF_SPHWW | Diaminopimelate epimerase |
| BSphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) | SPHAL02697 | DAPF_SPHAL | Diaminopimelate epimerase |
| BZymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1) | ZYMMA00235 | A0A0H3G097 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: zmn:Za10_0242 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BZymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) | ZYMMO00924 | DAPF_ZYMMO | Diaminopimelate epimerase KEGG: nar:Saro_1402 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BZymomonas mobilis subsp. mobilis (strain NCIMB 11163 / B70) | ZYMMN00240 | ACV74794.1 | diaminopimelate epimerase KEGG: pla:Plav_1415 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BZymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) | ZYMMT00213 | F8EU37 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: pla:Plav_1415 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BMicavibrio aeruginosavorus (strain ARL-13) | MICAA01481 | G2KNI1 | diaminopimelate epimerase |
| BPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) | POLGS00158 | F2IZH4 | Diaminopimelate epimerase |
| BPuniceispirillum marinum (strain IMCC1322) | PUNMI01812 | D5BML2 | |
| BAchromobacter xylosoxidans (strain A8) | ACHXA06164 | E3HP70 | diaminopimelate epimerase |
| BBordetella avium (strain 197N) | BORA100154 | Q2L1A2 | diaminopimelate epimerase |
| BBordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) | BORBR00188 | A0A0H3LGN5 | Diaminopimelate epimerase |
| BBordetella bronchiseptica (strain MO149) | BORBM00177 | CCJ56937.1 | diaminopimelate epimerase |
| BBordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) | BORPA00187 | Q7W203 | Diaminopimelate epimerase |
| BBordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) | BORP103002 | A0A0T7CT04 | diaminopimelate epimerase |
| BBordetella pertussis (strain CS) | BORPC02583 | AEE68265.1 | diaminopimelate epimerase |
| BBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) | BORPE02841 | Q7VUL2 | Diaminopimelate epimerase |
| BBordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD04702 | A9IH28 | DapF protein |
| BPusillimonas sp. (strain T7-7) | PUSST03300 | F4GQG2 | diaminopimelate epimerase |
| BTaylorella equigenitalis (strain MCE9) | TAYEM00756 | E8UFV1 | Diaminopimelate epimerase |
| BBurkholderia ambifaria (strain ATCC BAA-244 / AMMD) | BURCM03117 | DAPF_BURCM | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: bur:Bcep18194_A6435 diaminopimelate epimerase |
| BBurkholderia ambifaria (strain MC40-6) | BURA402961 | B1YPQ6 | Diaminopimelate epimerase |
| BBurkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) | BURCJ00499 | B4E7Z8 | diaminopimelate epimerase |
| BBurkholderia cenocepacia (strain AU 1054) | BURCA02445 | A0A0H2XRZ2 | Diaminopimelate epimerase |
| BBurkholderia cenocepacia (strain HI2424) | BURCH03067 | ABK09833.1 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: bcn:Bcen_2471 diaminopimelate epimerase |
| BBurkholderia multivorans (strain ATCC 17616 / 249) | BURM103034 | ABX16764.1 | Diaminopimelate epimerase |
| BBurkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG03063 | DAPF_BURVG | Diaminopimelate epimerase |
| BBurkholderia gladioli (strain BSR3) | BURGS03658 | F2LGG5 | Diaminopimelate epimerase |
| BBurkholderia glumae (strain BGR1) | BURGB03187 | C5AEZ7 | Diaminopimelate epimerase |
| BBurkholderia mallei (strain ATCC 23344) | BURMA02732 | DAPF_BURMA | Diaminopimelate epimerase |
| BBurkholderia mallei (strain NCTC 10229) | BURM902041 | DAPF_BURM9 | Diaminopimelate epimerase |
| BBurkholderia mallei (strain NCTC 10247) | BURM703212 | DAPF_BURM7 | Diaminopimelate epimerase |
| BBurkholderia mallei (strain SAVP1) | BURMS02741 | DAPF_BURMS | Diaminopimelate epimerase |
| BBurkholderia pseudomallei (strain 1106a) | BURP000202 | DAPF_BURP0 | Diaminopimelate epimerase |
| BBurkholderia pseudomallei (strain 668) | BURP600194 | DAPF_BURP6 | Diaminopimelate epimerase |
| BBurkholderia pseudomallei (strain K96243) | BURPS00208 | DAPF_BURPS | Diaminopimelate epimerase |
| BBurkholderia sp. (strain CCGE1002) | BURSC00063 | D5W9V5 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: bpy:Bphyt_0349 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBurkholderia sp. (strain CCGE1003) | BURSG00108 | E1T4Q3 | Diaminopimelate epimerase |
| BBurkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264) | BURTA00168 | DAPF_BURTA | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BCupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) | CUPMC00151 | DAPF_CUPMC | diaminopimelate epimerase |
| BCupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | CUPNH00227 | DAPF_CUPNH | Diaminopimelate epimerase |
| BCupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) | CUPNN00211 | G0ETB1 | diaminopimelate epimerase DapF |
| BCupriavidus necator (strain JMP 134 / LMG 1197) | CUPNJ00197 | DAPF_CUPNJ | Diaminopimelate epimerase |
| BCupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1) | CUPTR00170 | DAPF_CUPTR | Diaminopimelate epimerase |
| BParaburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) | PARP800074 | DAPF_PARP8 | Diaminopimelate epimerase |
| BParaburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) | PARPJ00307 | DAPF_PARPJ | Diaminopimelate epimerase |
| BParaburkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) | PARRH02792 | E5AN76 | Diaminopimelate epimerase (EC 5.1.1.7) Diaminopimelate epimerase (EC 5.1.1.7) COG: Diaminopimelate epimerase Pfam: Diaminopimelate epimerase::PF01678 |
| BParaburkholderia xenovorans (strain LB400) | PARXL00086 | DAPF_PARXL | Diaminopimelate epimerase |
| BPolynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) | POLAQ01992 | A4T0F3 | Diaminopimelate epimerase |
| BPolynucleobacter necessarius subsp. necessarius (strain STIR1) | POLNS01450 | B1XSI3 | Diaminopimelate epimerase |
| BRalstonia pickettii (strain 12D) | RALP100032 | C6BK76 | Diaminopimelate epimerase |
| BRalstonia pickettii (strain 12J) | RALPJ00035 | DAPF_RALPJ | Diaminopimelate epimerase |
| BRalstonia solanacearum (strain GMI1000) | RALSO00136 | DAPF_RALSO | Diaminopimelate epimerase |
| BRalstonia solanacearum (strain Po82) | RALS803173 | F6G619 | diaminopimelate epimerase (dap epimerase) protein |
| BAcidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) | ACIAP00717 | F0Q7W9 | |
| BAcidovorax citrulli (strain AAC00-1) | ACIAC00751 | DAPF_ACIAC | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pol:Bpro_1058 diaminopimelate epimerase |
| BAcidovorax ebreus (strain TPSY) | ACIET02924 | DAPF_ACIET | Diaminopimelate epimerase |
| BAcidovorax sp. (strain JS42) | ACISJ03433 | A1WC24 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pol:Bpro_1058 diaminopimelate epimerase |
| BAlicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) | ALIDK03893 | F4G560 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BComamonas testosteroni (strain CNB-2) | COMT204106 | D0J7E6 | diaminopimelate epimerase COG0253, DapF, Diaminopimelate epimerase |
| BDelftia acidovorans (strain DSM 14801 / SPH-1) | DELAS01445 | A9BUI9 | Diaminopimelate epimerase |
| BDelftia sp. (strain Cs1-4) | DELSC04999 | F6AVG0 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dac:Daci_1453 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BPolaromonas naphthalenivorans (strain CJ2) | POLNA03365 | A1VSV4 | Diaminopimelate epimerase |
| BPolaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ01037 | Q12EN2 | Diaminopimelate epimerase |
| BRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) | RAMTT00975 | F5XZK6 | Candidate Diaminopimelate epimerase |
| BRhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) | RHOFT03379 | DAPF_RHOFT | diaminopimelate epimerase |
| BVariovorax paradoxus (strain EPS) | VARPE00952 | E6UUK8 | diaminopimelate epimerase KEGG: vap:Vapar_0899 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BVariovorax paradoxus (strain S110) | VARPS00882 | DAPF_VARPS | diaminopimelate epimerase KEGG: pol:Bpro_1058 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BVerminephrobacter eiseniae (strain EF01-2) | VEREI04424 | A1WRJ4 | Diaminopimelate epimerase |
| BCollimonas fungivorans (strain Ter331) | COLFT04015 | G0AE06 | Diaminopimelate epimerase |
| BHerbaspirillum seropedicae (strain SmR1) | HERSS04231 | D8IUN0 | diaminopimelate epimerase protein |
| BHerminiimonas arsenicoxydans | HERAR02816 | CAL63067.1 | Diaminopimelate epimerase. Conserved domain: IPR001653 |
| BJanthinobacterium sp. (strain Marseille) | JANMA03200 | A6T2Z4 | Diaminopimelate epimerase |
| BLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP00128 | DAPF_LEPCP | Diaminopimelate epimerase |
| BMethylibium petroleiphilum (strain ATCC BAA-1232 / LMG 22953 / PM1) | METPP03191 | DAPF_METPP | Diaminopimelate epimerase |
| BRubrivivax gelatinosus (strain NBRC 100245 / IL144) | RUBGI00511 | I0HLH0 | diaminopimelate epimerase DapF |
| BThiomonas intermedia (strain K12) | THIK102138 | D5X3Z2 | diaminopimelate epimerase KEGG: rfr:Rfer_3444 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BChromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) | CHRVO02522 | DAPF_CHRVO | Diaminopimelate epimerase |
| BLaribacter hongkongensis (strain HLHK9) | LARHH01814 | DAPF_LARHH | DapF |
| BPseudogulbenkiania sp. (strain NH8B) | PSEUL02149 | G2J4R0 | diaminopimelate epimerase K01778 |
| BNeisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | NEIG100310 | Q5F9Q4 | putative diaminopimelate epimerase Best Blastp Hit: pir||E81161 diaminopimelate epimerase NMB0760 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225990|gb|AAF41173.1| (AE002430) diaminopimelate epimerase [Neisseria meningitidis MC58]; COG0253 Diaminopimelate epimerase; DapF |
| BNeisseria gonorrhoeae (strain NCCP11945) | NEIG200481 | B4RK32 | DapF |
| BNeisseria meningitidis (strain alpha14) | NEIML00626 | C6S628 | Diaminopimelate epimerase |
| BNeisseria meningitidis serogroup A / serotype 4A (strain Z2491) | NEIMA00862 | DAPF_NEIMA | Putative diaminopimelate epimerase |
| BNeisseria meningitidis serogroup A (strain WUE 2594) | NEIMW00641 | CBY90465.1 | diaminopimelate epimerase (DAP epimerase) MultiFUN-ID: 1.5.1.7 |
| BNeisseria meningitidis serogroup B (strain MC58) | NEIMB00718 | DAPF_NEIMB | Diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain alpha710) | NEIM700724 | E3D3C0 | putative diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B / serotype 15 (strain H44/76) | NEIMH01338 | E6N097 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain G2136) | NEIMG00676 | ADY93437.1 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain M01-240149) | NEIMM01258 | ADY97896.1 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain M01-240355) | NEIMP00714 | ADY99301.1 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain M04-240196) | NEIMO01312 | ADZ01850.1 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup B (strain NZ-05/33) | NEIMN00775 | A0A0E0TPE9 | diaminopimelate epimerase |
| BNeisseria meningitidis serogroup C (strain 053442) | NEIM000676 | A9M3J3 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BNeisseria meningitidis serogroup C (strain 8013) | NEIM801435 | CAX50451.1 | Diaminopimelate epimerase |
| BNeisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) | NEIMF00657 | A1KT22 | Putative diaminopimelate epimerase |
| BGallionella capsiferriformans (strain ES-2) | GALCS02595 | D9SD84 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: slt:Slit_0148 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BSideroxydans lithotrophicus (strain ES-1) | SIDLE00148 | D5CU55 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: dar:Daro_0192 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BMethylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) | METFK00196 | Q1H4X0 | Diaminopimelate epimerase |
| BMethylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) | METML02181 | C6WT34 | Diaminopimelate epimerase |
| BMethylovorus glucosetrophus (strain SIP3-4) | METGS00174 | C6X8F3 | diaminopimelate epimerase KEGG: mfa:Mfla_0196 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; Phenazine biosynthesis PhzC/PhzF protein |
| BMethylovorus sp. (strain MP688) | METS600174 | ADQ83374.1 | diaminopimelate epimerase |
| BNitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) | NITEU01554 | DAPF_NITEU | Diaminopimelate epimerase |
| BNitrosomonas eutropha (strain C91) | NITEC00482 | DAPF_NITEC | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: neu:NE1612 diaminopimelate epimerase |
| BNitrosomonas sp. (strain Is79A3) | NITSI01447 | F8GHG5 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: nit:NAL212_2297 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) | NITMU02446 | DAPF_NITMU | diaminopimelate epimerase |
| BThiobacillus denitrificans (strain ATCC 25259) | THIDA02525 | Q3SFX7 | diaminopimelate epimerase |
| BDechloromonas aromatica (strain RCB) | DECAR00192 | DAPF_DECAR | diaminopimelate epimerase |
| BAromatoleum aromaticum (strain EbN1) | AROAE02166 | DAPF_AROAE | Diaminopimelate epimerase |
| BDechlorosoma suillum (strain ATCC BAA-33 / DSM 13638 / PS) | DECSP00633 | G8QGI0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAzoarcus sp. (strain BH72) | AZOSB00590 | DAPF_AZOSB | DapF protein Diaminopimelate epimerase catalyzes the isomeriazation of L,L- to D,L-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. Two conserved cysteines seem to function as the acid and base in the catalytic mechanism. Similar to TREMBL:Q82U84 (58%). Pfam (PF01678): Diaminopimelate epimerase TIGRfam (TIGR00652): Diaminopimelate epimerase High confidence in function and specificity |
| BThauera sp. (strain MZ1T) | THASP03608 | C4KD15 | Diaminopimelate epimerase |
| BAccumulibacter phosphatis (strain UW-1) | ACCPU03936 | C7RPB8 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: dar:Daro_0192 diaminopimelate epimerase |
| BAeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) | AERHH00449 | DAPF_AERHH | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BAeromonas salmonicida (strain A449) | AERS403332 | DAPF_AERS4 | Diaminopimelate epimerase |
| BAeromonas veronii (strain B565) | AERVB00283 | AEB48318.1 | Diaminopimelate epimerase |
| BOceanimonas sp. (strain GK1) | OCESG00486 | H2G103 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BTolumonas auensis (strain DSM 9187 / TA4) | TOLAT03075 | DAPF_TOLAT | diaminopimelate epimerase KEGG: aha:AHA_0474 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BAlteromonas macleodii (strain Balearic Sea AD45) | ALTMB00152 | K0EBD1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BAlteromonas macleodii (strain Black Sea 11) | ALTMS00156 | K0CZ28 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BAlteromonas macleodii (strain English Channel 673) | ALTME00159 | A0A0E0Y8P7 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BAlteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) | ALTMD00202 | ACG64523.1 | Diaminopimelate epimerase |
| BAlteromonas naphthalenivorans | ALTNA03407 | F5ZFE2 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BMarinobacter adhaerens (strain HP15) | MARAH00246 | E4PK81 | diaminopimelate epimerase |
| BMarinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8) | MARHV00457 | A1TXX7 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: hch:HCH_00298 diaminopimelate epimerase |
| BColwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP300060 | DAPF_COLP3 | diaminopimelate epimerase identified by similarity to SP:P46357; match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BFerrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) | FERBD03679 | E1SQC3 | Diaminopimelate epimerase |
| BIdiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) | IDILO02524 | DAPF_IDILO | Diaminopimelate epimerase |
| BPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) | PSEA604030 | DAPF_PSEA6 | Diaminopimelate epimerase |
| BPseudoalteromonas haloplanktis (strain TAC 125) | PSEHT00087 | DAPF_PSEHT | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3283102, 3031013; Product type e : enzyme |
| BPseudoalteromonas sp. (strain SM9913) | PSEU900094 | ADT67056.1 | |
| BPsychromonas ingrahamii (strain 37) | PSYIN00037 | DAPF_PSYIN | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pat:Patl_4074 diaminopimelate epimerase |
| BShewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM03232 | DAPF_SHEAM | Diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| BShewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB503669 | DAPF_SHEB5 | Diaminopimelate epimerase |
| BShewanella baltica (strain OS185) | SHEB803895 | DAPF_SHEB8 | Diaminopimelate epimerase |
| BShewanella baltica (strain OS195) | SHEB904007 | DAPF_SHEB9 | PFAM: diaminopimelate epimerase KEGG: shw:Sputw3181_3721 diaminopimelate epimerase Diaminopimelate epimerase |
| BShewanella baltica (strain OS223) | SHEB203783 | DAPF_SHEB2 | Diaminopimelate epimerase |
| BShewanella baltica (strain OS678) | SHEB604012 | ADT96250.1 | diaminopimelate epimerase KEGG: shw:Sputw3181_3721 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO00386 | DAPF_SHEDO | Diaminopimelate epimerase |
| BShewanella frigidimarina (strain NCIMB 400) | SHEFN00441 | DAPF_SHEFN | Diaminopimelate epimerase |
| BShewanella halifaxensis (strain HAW-EB4) | SHEHH03874 | B0TJ49 | Diaminopimelate epimerase |
| BShewanella loihica (strain ATCC BAA-1088 / PV-4) | SHELP00322 | DAPF_SHELP | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| BShewanella oneidensis (strain MR-1) | SHEON04028 | DAPF_SHEON | Diaminopimelate epimerase |
| BShewanella pealeana (strain ATCC 700345 / ANG-SQ1) | SHEPA00371 | A8GZG9 | PFAM: diaminopimelate epimerase KEGG: sfr:Sfri_0445 diaminopimelate epimerase Diaminopimelate epimerase |
| BShewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW00386 | B8CHW4 | Diaminopimelate epimerase |
| BShewanella putrefaciens (strain 200) | SHEP203423 | E6XQQ9 | diaminopimelate epimerase KEGG: shw:Sputw3181_3721 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BShewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC03531 | DAPF_SHEPC | Diaminopimelate epimerase |
| BShewanella sediminis (strain HAW-EB3) | SHESH04116 | DAPF_SHESH | KEGG: slo:Shew_0323 diaminopimelate epimerase Diaminopimelate epimerase |
| BShewanella sp. (strain ANA-3) | SHESA00386 | DAPF_SHESA | diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| BShewanella sp. (strain MR-4) | SHESM00390 | DAPF_SHESM | Diaminopimelate epimerase |
| BShewanella sp. (strain MR-7) | SHESR03596 | DAPF_SHESR | Diaminopimelate epimerase |
| BShewanella sp. (strain W3-18-1) | SHESW03638 | DAPF_SHESW | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: shm:Shewmr7_3633 diaminopimelate epimerase |
| BShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) | SHEVD03827 | D4ZCR3 | Diaminopimelate epimerase |
| BShewanella woodyi (strain ATCC 51908 / MS32) | SHEWM00481 | DAPF_SHEWM | Diaminopimelate epimerase |
| BDichelobacter nodosus (strain VCS1703A) | DICNV00039 | A5EWY0 | Diaminopimelate epimerase |
| BCellvibrio japonicus (strain Ueda107) | CELJU03183 | DAPF_CELJU | Diaminopimelate epimerase |
| BSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD200237 | DAPF_SACD2 | diaminopimelate epimerase |
| BSimiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) | SIMAS02313 | K4KK60 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BTeredinibacter turnerae (strain ATCC 39867 / T7901) | TERTT03736 | DAPF_TERTT | Diaminopimelate epimerase |
| BAllochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) | ALLVD02034 | D3RV79 | diaminopimelate epimerase KEGG: tgr:Tgr7_0045 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BNitrosococcus halophilus (strain Nc4) | NITHN03585 | D5C3E8 | diaminopimelate epimerase KEGG: noc:Noc_0316 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; Phenazine biosynthesis PhzC/PhzF protein |
| BNitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / NCIMB 11848 / C-107) | NITOC00286 | DAPF_NITOC | diaminopimelate epimerase |
| BNitrosococcus watsoni (strain C-113) | NITWC00377 | D8KA62 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: noc:Noc_0316 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BThiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) | THIV602160 | I3YBG5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAlkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) | ALKEH00059 | DAPF_ALKEH | diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: noc:Noc_0316 diaminopimelate epimerase |
| BHalorhodospira halophila (strain DSM 244 / SL1) | HALHL01178 | DAPF_HALHL | Diaminopimelate epimerase |
| BThioalkalivibrio sp. (strain K90mix) | THISK00115 | D3SCB6 | diaminopimelate epimerase KEGG: cja:CJA_3290 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BThioalkalivibrio sulfidiphilus (strain HL-EbGR7) | THISH00042 | DAPF_THISH | Diaminopimelate epimerase |
| BHalothiobacillus neapolitanus (strain ATCC 23641 / c2) | HALNC00370 | D0KXR5 | Diaminopimelate epimerase |
| BRiesia pediculicola (strain USDA) | RIEPU00213 | D4G844 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BCitrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK800140 | A8ACV7 | Putative uncharacterized protein |
| BCitrobacter rodentium (strain ICC168) | CITRI03743 | D2TV21 | Diaminopimelate epimerase |
| BCronobacter sakazakii (strain ATCC BAA-894) | CROS803615 | DAPF_CROS8 | Putative uncharacterized protein |
| BCronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) | CROTZ00242 | C9Y4V6 | Diaminopimelate epimerase |
| BEnterobacter asburiae (strain LF7a) | ENTAL04210 | G2S5H2 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: enc:ECL_04982 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BEnterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56) | ENTCC04829 | A0A0H3CTD4 | diaminopimelate epimerase |
| BEnterobacter lignolyticus (strain SCF1) | ENTLS04174 | E3G3X7 | diaminopimelate epimerase KEGG: ecg:E2348C_4109 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BEnterobacter sp. (strain 638) | ENT3803946 | DAPF_ENT38 | Diaminopimelate epimerase |
| BEscherichia coli | ECOLX04139 | A0A1R1TQX7 | COG0253 Diaminopimelate epimerase diaminopimelate epimerase |
| BEscherichia coli (strain 'clone D i14') | ECOC104234 | AER91763.1 | diaminopimelate epimerase |
| BEscherichia coli (strain 'clone D i2') | ECOC204234 | AER86844.1 | diaminopimelate epimerase |
| BEscherichia coli (strain 55989 / EAEC) | ECO5504118 | DAPF_ECO55 | Diaminopimelate epimerase |
| BEscherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) | ECOD104032 | ACX41770.1 | Diaminopimelate epimerase |
| BEscherichia coli (strain ATCC 55124 / KO11FL) | ECOKO04419 | ADX53103.1 | diaminopimelate epimerase KEGG: sdy:SDY_3936 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BEscherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W) | ECOLW04116 | E0J3Y6 | diaminopimelate epimerase |
| BEscherichia coli (strain B / BL21) | ECOBB03557 | CAQ34151.1 | DapF protein |
| BEscherichia coli (strain B / BL21-DE3) | ECOBD04060 | A0A140NG64 | Diaminopimelate epimerase |
| BEscherichia coli (strain K12) | ECOLI03680 | DAPF_ECOLI | Diaminopimelate epimerase |
| BEscherichia coli (strain K12 / DH10B) | ECODH03548 | DAPF_ECODH | Diaminopimelate epimerase |
| BEscherichia coli (strain K12 / MC4100 / BW2952) | ECOBW03436 | DAPF_ECOBW | Diaminopimelate epimerase |
| BEscherichia coli (strain SE11) | ECOSE04079 | B6I4F0 | Diaminopimelate epimerase |
| BEscherichia coli (strain SMS-3-5 / SECEC) | ECOSM03985 | DAPF_ECOSM | Diaminopimelate epimerase |
| BEscherichia coli (strain UM146) | ECOUM03739 | ADN73176.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BEscherichia coli (strain UTI89 / UPEC) | ECOUT04263 | Q1R4C5 | Diaminopimelate epimerase |
| BEscherichia coli (strain B / REL606) | ECOBR03566 | ACT41323.1 | Diaminopimelate epimerase |
| BEscherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC04078 | DAPF_ECOLC | Diaminopimelate epimerase |
| BEscherichia coli O103:H2 (strain 12009 / EHEC) | ECO1004195 | C8TYP7 | diaminopimelate epimerase DapF |
| BEscherichia coli O104:H4 (strain 2009EL-2071) | ECO1E04857 | AFS83897.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BEscherichia coli O111:H- (strain 11128 / EHEC) | ECO1A04476 | C8UJJ1 | Diaminopimelate epimerase |
| BEscherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2704044 | DAPF_ECO27 | Diaminopimelate epimerase |
| BEscherichia coli O139:H28 (strain E24377A / ETEC) | ECO2404077 | DAPF_ECO24 | Diaminopimelate epimerase |
| BEscherichia coli O150:H5 (strain SE15) | ECOS503631 | BAI57188.1 | diaminopimelate epimerase |
| BEscherichia coli O157:H7 | ECO5704582 | DAPF_ECO57 | Diaminopimelate epimerase |
| BEscherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E04514 | DAPF_ECO5E | Diaminopimelate epimerase |
| BEscherichia coli O157:H7 (strain TW14359 / EHEC) | ECO5T04539 | ACT74566.1 | Diaminopimelate epimerase |
| BEscherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU04204 | DAPF_ECOLU | Diaminopimelate epimerase |
| BEscherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) | ECOKI04075 | ADE90762.1 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BEscherichia coli O1:K1 / APEC | ECOK103759 | A0A0H2Z4B8 | diaminopimelate epimerase |
| BEscherichia coli O26:H11 (strain 11368 / EHEC) | ECO2604578 | BAI27936.1 | diaminopimelate epimerase DapF |
| BEscherichia coli O44:H18 (strain 042 / EAEC) | ECO4404149 | D3H421 | diaminopimelate epimerase |
| BEscherichia coli O45:K1 (strain S88 / ExPEC) | ECO4504023 | DAPF_ECO45 | Diaminopimelate epimerase |
| BEscherichia coli O55:H7 (strain CB9615 / EPEC) | ECOCB04359 | D3QXA1 | Diaminopimelate epimerase |
| BEscherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) | ECOL604589 | DAPF_ECOL6 | Diaminopimelate epimerase |
| BEscherichia coli O6:K15:H31 (strain 536 / UPEC) | ECOL503937 | DAPF_ECOL5 | Diaminopimelate epimerase |
| BEscherichia coli O78:H11 (strain H10407 / ETEC) | ECOH104010 | E3PNZ6 | diaminopimelate epimerase |
| BEscherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I02812 | DAPF_ECO7I | Diaminopimelate epimerase |
| BEscherichia coli O8 (strain IAI1) | ECO8A03840 | DAPF_ECO8A | Diaminopimelate epimerase |
| BEscherichia coli O81 (strain ED1a) | ECO8104256 | DAPF_ECO81 | Diaminopimelate epimerase |
| BEscherichia coli O83:H1 (strain NRG 857C / AIEC) | ECO8N03750 | A0A0H3ERY7 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BEscherichia coli O9:H4 (strain HS) | ECOHS03749 | DAPF_ECOHS | Diaminopimelate epimerase |
| BEscherichia coli OR:K5:H- (strain ABU 83972) | ECOAB04079 | ADN48710.1 | Diaminopimelate epimerase |
| BEscherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) | ESCF303549 | DAPF_ESCF3 | diaminopimelate epimerase Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 84264509, 88298857, 90092091, 2254268, 3057443, 8874804, 10037776, 10361305, 10635320, 11832210; Product type e : enzyme |
| BKlebsiella aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) | KLEAK01561 | A0A0H3FPS8 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BKlebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) | KLEOK01512 | A0A0H3H1I0 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BKlebsiella pneumoniae (strain 342) | KLEP305216 | B5XYK7 | Diaminopimelate epimerase |
| BKlebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP704233 | A6TGJ2 | Diaminopimelate epimerase |
| BKlebsiella pneumoniae subsp. pneumoniae (strain HS11286) | KLEPH00153 | A0A0H3GKE3 | diaminopimelate epimerase |
| BKlebsiella variicola (strain At-22) | KLEVT04879 | ADC60795.1 | Diaminopimelate epimerase 2 |
| BSalmonella bongori (strain ATCC 43975 / DSM 13772 / NCTC 12419) | SALBC03421 | A0A0K0HFW6 | diaminopimelate epimerase |
| BSalmonella dublin (strain CT_02021853) | SALDC03912 | DAPF_SALDC | Diaminopimelate epimerase |
| BSalmonella agona (strain SL483) | SALA403871 | DAPF_SALA4 | Diaminopimelate epimerase |
| BSalmonella choleraesuis (strain SC-B67) | SALCH03797 | Q57HR0 | diaminopimelate epimerase IPR001653: Diaminopimelate epimerase |
| BSalmonella pullorum (strain RKS5078 / SGSC2294) | SALPS03274 | AET55743.1 | diaminopimelate epimerase |
| BSalmonella heidelberg (strain SL476) | SALHS03969 | DAPF_SALHS | Diaminopimelate epimerase |
| BSalmonella paratyphi B (strain ATCC BAA-1250 / SPB7) | SALPB04713 | DAPF_SALPB | Putative uncharacterized protein |
| BSalmonella paratyphi C (strain RKS4594) | SALPC03887 | C0Q3B8 | Diaminopimelate epimerase |
| BSalmonella schwarzengrund (strain CVM19633) | SALSV03852 | DAPF_SALSV | Diaminopimelate epimerase |
| BSalmonella enteritidis PT4 (strain P125109) | SALEP03715 | CAR35320.1 | Diaminopimelate epimerase |
| BSalmonella gallinarum (strain 287/91 / NCTC 13346) | SALG203366 | B5RFP9 | Diaminopimelate epimerase |
| BSalmonella newport (strain SL254) | SALNS03938 | DAPF_SALNS | Diaminopimelate epimerase |
| BSalmonella paratyphi A (strain AKU_12601) | SALPK03679 | DAPF_SALPK | Diaminopimelate epimerase |
| BSalmonella paratyphi A (strain ATCC 9150 / SARB42) | SALPA03514 | DAPF_SALPA | diaminopimelate epimerase similar to Salmonella typhi CT18 diaminopimelate epimerase |
| BSalmonella typhi | SALTI03290 | DAPF_SALTI | Diaminopimelate epimerase |
| BSalmonella typhimurium (strain 4/74) | SALT403961 | E8XJD5 | diaminopimelate epimerase |
| BSalmonella typhimurium (strain D23580) | SALTD03890 | CBG26931.1 | diaminopimelate epimerase pfam_scan;Pfam:PF01678;;E()=5.1E-38;score=129.1;quer y 4-124;description=DAP_epimerase |
| BSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) | SALTY03804 | DAPF_SALTY | Diaminopimelate epimerase |
| BSalmonella typhimurium (strain 14028s / SGSC 2262) | SALT104577 | A0A0F6B9A9 | diaminopimelate epimerase involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate |
| BSalmonella typhimurium (strain SL1344) | SALTS03873 | A0A0H3NJM9 | Diaminopimelate epimerase |
| BSalmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR03550 | A9MJ06 | Putative uncharacterized protein |
| BShigella boydii serotype 18 (strain CDC 3083-94 / BS512) | SHIB303316 | DAPF_SHIB3 | Diaminopimelate epimerase |
| BShigella boydii serotype 4 (strain Sb227) | SHIBS03230 | Q31UH9 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BShigella dysenteriae serotype 1 (strain Sd197) | SHIDS03123 | Q329Y5 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BShigella flexneri | SHIFL04171 | A0A222RP28 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BShigella flexneri serotype 5b (strain 8401) | SHIF803184 | DAPF_SHIF8 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BShigella flexneri serotype X (strain 2002017) | SHIF203625 | D2ABY2 | Diaminopimelate epimerase |
| BShigella sonnei (strain Ss046) | SHISS03344 | Q3YVF7 | diaminopimelate epimerase Code: E; COG: COG0253 |
| BShimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) | SHIBC03641 | I2BE61 | diaminopimelate epimerase glucose-specific IIA component |
| BBlochmannia floridanus | BLOFL00545 | DAPF_BLOFL | Diaminopimelate epimerase |
| BBlochmannia pennsylvanicus (strain BPEN) | BLOPB00560 | DAPF_BLOPB | diaminopimelate epimerase ortholog to Escherichia coli bnum: b3809; MultiFun: Metabolism 1.5.1.7 |
| BBlochmannia vafer (strain BVAF) | BLOVB00545 | E8Q6J0 | diaminopimelate epimerase |
| BHamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) | HAMD500636 | C4K4D9 | Diaminopimelate epimerase |
| BEnterobacteriaceae bacterium (strain FGI 57) | ENTBF04133 | L0MBY9 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) | BUCAI00548 | DAPF_BUCAI | Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) | BUCA500541 | DAPF_BUCA5 | Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98) | BUCAJ00464 | ADP68036.1 | Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99) | BUCAF00573 | ADP67555.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01) | BUCA000561 | ADP66393.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) | BUCAT00539 | DAPF_BUCAT | Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Baizongia pistaciae (strain Bp) | BUCBP00491 | DAPF_BUCBP | Diaminopimelate epimerase |
| BBuchnera aphidicola subsp. Cinara cedri (strain Cc) | BUCCC00347 | Q056W9 | diaminopimelate epimerase COG_category E;COG_number COG0253; DapF |
| BBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) | BUCAP00538 | DAPF_BUCAP | Diaminopimelate epimerase |
| BErwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3) | ERWAE00183 | CBJ44858.1 | diaminopimelate epimerase |
| BErwinia amylovora (strain CFBP1430) | ERWAC00190 | D4HUK9 | Diaminopimelate epimerase Diaminopimelate epimerase (DAP epimerase) |
| BErwinia billingiae (strain Eb661) | ERWBE00212 | D8MKT7 | Diaminopimelate epimerase silverDB:661Eb00266 |
| BErwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) | ERWP600212 | D2TCR7 | Diaminopimelate epimerase (DAP epimerase) |
| BErwinia pyrifoliae (strain Ep1/96) | ERWPE00202 | CAX53961.1 | Diaminopimelate epimerase silverDB:cEP00203 |
| BErwinia sp. (strain Ejp617) | ERWSE01378 | E3DD20 | diaminopimelate epimerase |
| BErwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99) | ERWT900215 | DAPF_ERWT9 | Diaminopimelate epimerase |
| BPantoea ananatis (strain AJ13355) | PANAA03319 | A0A0H3L928 | diaminopimelate epimerase DapF similar to Pantoea sp. At-9b, diaminopimelate epimerase (NCBI: ZP_05730678.1) COG: amino acid transport and metabolism subcellular localization as predicted by Psort 2.0: cytoplasmic |
| BPantoea ananatis (strain LMG 20103) | PANAM00165 | D4GGN1 | Diaminopimelate epimerase |
| BPantoea sp. (strain At-9b) | PANSA00155 | E6WHG0 | diaminopimelate epimerase KEGG: eta:ETA_02150 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BPantoea vagans (strain C9-1) | PANVC03314 | E1SKN6 | Diaminopimelate epimerase |
| BWigglesworthia glossinidia brevipalpis | WIGBR00270 | DAPF_WIGBR | Diaminopimelate epimerase |
| BEdwardsiella ictaluri (strain 93-146) | EDWI900106 | DAPF_EDWI9 | Diaminopimelate epimerase |
| BEdwardsiella tarda (strain EIB202) | EDWTE00120 | D0Z995 | Diaminopimelate epimerase |
| BEdwardsiella tarda (strain FL6-60) | EDWTF00094 | A0A0H3DLR8 | Diaminopimelate epimerase |
| BPhotorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) | PHOAA04037 | B6VLR4 | Diaminopimelate epimerase |
| BPhotorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) | PHOLL04498 | DAPF_PHOLL | Diaminopimelate epimerase |
| BProteus mirabilis (strain HI4320) | PROMH03302 | DAPF_PROMH | Diaminopimelate epimerase |
| BProvidencia stuartii (strain MRSN 2154) | PROSM02272 | A0A140NNE6 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BXenorhabdus bovienii (strain SS-2004) | XENBS03894 | D3V6I8 | diaminopimelate epimerase |
| BXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) | XENNA00379 | D3VHZ7 | diaminopimelate epimerase |
| BDickeya chrysanthemi (strain Ech1591) | DICC100182 | C6CGK6 | Diaminopimelate epimerase |
| BDickeya dadantii (strain 3937) | DICD304207 | E0SKM8 | Diaminopimelate epimerase |
| BDickeya paradisiaca (strain Ech703) | DICP700230 | C6C7D1 | Diaminopimelate epimerase |
| BDickeya zeae (strain Ech586) | DICZ503801 | D2BYP5 | diaminopimelate epimerase KEGG: dze:Dd1591_0183 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BPectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) | PECAS04148 | DAPF_PECAS | diaminopimelate epimerase Similar to Escherichia coli diaminopimelate epimerase DapF or b3809 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3e-99, 87.22% id in 274 aa |
| BPectobacterium carotovorum subsp. carotovorum (strain PC1) | PECCP03926 | DAPF_PECCP | Diaminopimelate epimerase |
| BPectobacterium parmentieri (strain WPP163) | PECPW04015 | D0KBL9 | Diaminopimelate epimerase |
| BPectobacterium sp. (strain SCC3193) | PECSS04224 | A0A0H3IBF4 | Diaminopimelate epimerase |
| BSodalis glossinidius (strain morsitans) | SODGM02317 | DAPF_SODGM | diaminopimelate epimerase |
| BRahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) | RAHAC04125 | H2IWQ5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BRahnella sp. (strain Y9602) | RAHSY04185 | A0A0H3FHU2 | diaminopimelate epimerase KEGG: spe:Spro_0182 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BSerratia fonticola | SERFO01763 | A0A0F7HIK7 | diaminopimelate epimerase involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. |
| BSerratia plymuthica (strain AS9) | SERSA00140 | AEF43305.1 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: spe:Spro_0182 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BSerratia proteamaculans (strain 568) | SERP500182 | DAPF_SERP5 | Diaminopimelate epimerase |
| BYersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) | YERE800181 | DAPF_YERE8 | Diaminopimelate epimerase |
| BYersinia enterocolitica subsp. palearctica serotype O:3 (strain DSM 13030 / CIP 106945 / Y11) | YERE103328 | A0A0H3NX06 | diaminopimelate epimerase |
| BYersinia enterocolitica subsp. palearctica serotype O:9 / biotype 3 (strain 105.5R(r)) | YERE300190 | ADZ40690.1 | |
| BYersinia pestis | YERPE03546 | DAPF_YERPE | Diaminopimelate epimerase |
| BYersinia pestis (strain D106004) | YERPD03254 | ACY60296.1 | diaminopimelate epimerase |
| BYersinia pestis (strain D182038) | YERP103241 | ACY64060.1 | Diaminopimelate epimerase |
| BYersinia pestis (strain Pestoides F) | YERPP03274 | DAPF_YERPP | Diaminopimelate epimerase |
| BYersinia pestis (strain Z176003) | YERPZ03255 | ADE66309.1 | Diaminopimelate epimerase |
| BYersinia pestis bv. Antiqua (strain Angola) | YERPG00453 | DAPF_YERPG | Diaminopimelate epimerase |
| BYersinia pestis bv. Antiqua (strain Antiqua) | YERPA00166 | DAPF_YERPA | Diaminopimelate epimerase |
| BYersinia pestis bv. Antiqua (strain Nepal516) | YERPN00116 | DAPF_YERPN | Diaminopimelate epimerase |
| BYersinia pestis bv. Medievalis (strain Harbin 35) | YERPH00335 | ADV97128.1 | diaminopimelate epimerase |
| BYersinia pseudotuberculosis serotype I (strain IP32953) | YERPS00189 | DAPF_YERPS | Diaminopimelate epimerase |
| BYersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB00197 | DAPF_YERPB | Diaminopimelate epimerase |
| BYersinia pseudotuberculosis serotype O:1b (strain IP 31758) | YERP300196 | DAPF_YERP3 | Diaminopimelate epimerase |
| BYersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY03937 | DAPF_YERPY | Diaminopimelate epimerase |
| BCoxiella burnetii (strain CbuG_Q212) | COXB201717 | DAPF_COXB2 | Diaminopimelate epimerase |
| BCoxiella burnetii (strain CbuK_Q154) | COXB101757 | DAPF_COXB1 | diaminopimelate epimerase |
| BCoxiella burnetii (strain Dugway 5J108-111) | COXBN01923 | DAPF_COXBN | Diaminopimelate epimerase |
| BCoxiella burnetii (strain RSA 331 / Henzerling II) | COXBR00100 | DAPF_COXBR | Diaminopimelate epimerase |
| BCoxiella burnetii (strain RSA 493 / Nine Mile phase I) | COXBU01675 | DAPF_COXBU | Diaminopimelate epimerase |
| BLegionella longbeachae serogroup 1 (strain NSW150) | LEGLN00534 | D3HPP4 | Diaminopimelate epimerase |
| BLegionella pneumophila (strain Corby) | LEGPC02878 | DAPF_LEGPC | Diaminopimelate epimerase |
| BLegionella pneumophila (strain Lens) | LEGPL00401 | DAPF_LEGPL | Diaminopimelate epimerase |
| BLegionella pneumophila (strain Paris) | LEGPA00429 | DAPF_LEGPA | Diaminopimelate epimerase |
| BLegionella pneumophila serogroup 1 (strain 2300/99 Alcoy) | LEGP200417 | ADG23662.1 | diaminopimelate epimerase COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism] |
| BLegionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) | LEGPH03517 | DAPF_LEGPH | Diaminopimelate epimerase FIG00000421 |
| BTatlockia micdadei | TATMI00454 | A0A098GBF9 | Diaminopimelate epimerase |
| BMethylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) | METCA00801 | Q60AJ4 | Diaminopimelate epimerase |
| BMethylomicrobium alcaliphilum | METAA01203 | CCE22924.1 | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10037776, 1036130, 2254268, 3057443, 84264509, 88298857, 8874804, 90092091; Product type e : enzyme |
| BMethylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) | META201203 | G4SVF2 | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10037776, 1036130, 2254268, 3057443, 84264509, 88298857, 8874804, 90092091; Product type e : enzyme |
| BMethylomonas methanica (strain MC09) | METMM00354 | G0A0N9 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; manually curated; TIGRFAM: Diaminopimelate epimerase; KEGG: mca:MCA0859 diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase |
| BAlcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) | ALCBS02330 | DAPF_ALCBS | Diaminopimelate epimerase |
| BAlcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) | ALCDB03974 | K0CKQ8 | Diaminopimelate epimerase |
| BHahella chejuensis (strain KCTC 2396) | HAHCH00287 | DAPF_HAHCH | diaminopimelate epimerase TIGRFAMsMatches:TIGR00652 |
| BChromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD03092 | DAPF_CHRSD | Diaminopimelate epimerase |
| BHalomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) | HALED03256 | E1VBI6 | diaminopimelate epimerase |
| BKangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) | KANKD00173 | C7R6T0 | diaminopimelate epimerase KEGG: hch:HCH_00298 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BMarinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) | MARM102861 | F2K0S8 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: mmw:Mmwyl1_3587 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BMarinomonas sp. (strain MWYL1) | MARMS03522 | A6W1B0 | Diaminopimelate epimerase |
| BNeptuniibacter caesariensis | NEPCE02488 | Q2BRG0 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BActinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ01495 | DAPF_ACTPJ | Diaminopimelate epimerase |
| BActinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP201497 | DAPF_ACTP2 | Diaminopimelate epimerase |
| BActinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP701562 | DAPF_ACTP7 | Diaminopimelate epimerase |
| BActinobacillus succinogenes (strain ATCC 55618 / 130Z) | ACTSZ01931 | DAPF_ACTSZ | Diaminopimelate epimerase |
| BAggregatibacter actinomycetemcomitans serotype C (strain D11S-1) | AGGAD00530 | C9R2C0 | Diaminopimelate epimerase |
| BAggregatibacter aphrophilus (strain NJ8700) | AGGAN01572 | ACS98025.1 | diaminopimelate epimerase identified by Glimmer3; putative |
| BMannheimia succiniciproducens (strain MBEL55E) | MANSM01773 | DAPF_MANSM | DapF protein Diaminopimelate epimerase |
| BGallibacterium anatis (strain UMN179) | GALAU01809 | F4HDH5 | diaminopimelate epimerase |
| BHaemophilus ducreyi (strain 35000HP / ATCC 700724) | HAEDU00020 | DAPF_HAEDU | diaminopimelate epimerase |
| BHaemophilus influenzae (strain 10810) | HAEI100872 | E1XB53 | diaminopimelate epimerase |
| BHaemophilus influenzae (strain 86-028NP) | HAEI800797 | DAPF_HAEI8 | diaminopimelate epimerase DAP epimerase; Similar to: HI0750, DAPF_HAEIN |
| BHaemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) | HAEIN00734 | DAPF_HAEIN | Diaminopimelate epimerase |
| BHaemophilus influenzae (strain PittEE) | HAEIE01468 | DAPF_HAEIE | Diaminopimelate epimerase |
| BHaemophilus influenzae (strain PittGG) | HAEIG01179 | DAPF_HAEIG | Diaminopimelate epimerase |
| BHaemophilus influenzae (strain R2846 / 12) | HAEI201484 | ADO96955.1 | Diaminopimelate epimerase |
| BHaemophilus influenzae (strain R2866) | HAEI601576 | ADO81573.1 | Diaminopimelate epimerase |
| BHaemophilus parainfluenzae (strain T3T1) | HAEP300919 | E1W3T9 | diaminopimelate epimerase |
| BHaemophilus parasuis serovar 5 (strain SH0165) | HAEPS01796 | DAPF_HAEPS | Diaminopimelate epimerase |
| BHaemophilus somnus (strain 129Pt) | HAES101606 | DAPF_HAES1 | diaminopimelate epimerase |
| BHistophilus somni (strain 2336) | HISS200393 | DAPF_HISS2 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: hso:HS_1610 diaminopimelate epimerase |
| BPasteurella multocida (strain HN06) | PASMH02084 | AFF25375.1 | diaminopimelate epimerase |
| BPasteurella multocida (strain Pm70) | PASMU01703 | DAPF_PASMU | Diaminopimelate epimerase |
| BAcinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) | ACIAD02399 | DAPF_ACIAD | diaminopimelate epimerase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme |
| BAcinetobacter baumannii (strain 1656-2) | ACIB102853 | ADX04562.1 | dapF |
| BAcinetobacter baumannii (strain AB0057) | ACIB502883 | DAPF_ACIB5 | Diaminopimelate epimerase |
| BAcinetobacter baumannii (strain AB307-0294) | ACIB300815 | DAPF_ACIB3 | Diaminopimelate epimerase |
| BAcinetobacter baumannii (strain ACICU) | ACIBC02865 | DAPF_ACIBC | Diaminopimelate epimerase |
| BAcinetobacter baumannii (strain AYE) | ACIBY00814 | DAPF_ACIBY | Diaminopimelate epimerase |
| BAcinetobacter baumannii (strain SDF) | ACIBS00718 | DAPF_ACIBS | Diaminopimelate epimerase |
| BAcinetobacter baumannii (strain TCDC-AB0715) | ACIBD02950 | ADX93519.1 | diaminopimelate epimerase |
| BAcinetobacter calcoaceticus (strain PHEA-2) | ACICP02064 | F0KL93 | diaminopimelate epimerase |
| BAcinetobacter oleivorans (strain JCM 16667 / KCTC 23045 / DR1) | ACISD00824 | D8JE77 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BMoraxella catarrhalis (strain RH4) | MORCR01465 | ADG61742.1 | diaminopimelate epimerase |
| BPsychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200198 | DAPF_PSYA2 | Diaminopimelate epimerase |
| BPsychrobacter cryohalolentis (strain K5) | PSYCK00220 | DAPF_PSYCK | diaminopimelate epimerase |
| BPsychrobacter sp. (strain PRwf-1) | PSYWF00340 | DAPF_PSYWF | Diaminopimelate epimerase |
| BAzotobacter vinelandii (strain DJ / ATCC BAA-1303) | AZOVD04541 | DAPF_AZOVD | diaminopimelate epimerase |
| BPseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | PSEAE05265 | DAPF_PSEAE | Diaminopimelate epimerase |
| BPseudomonas aeruginosa (strain LESB58) | PSEA805645 | DAPF_PSEA8 | Diaminopimelate epimerase |
| BPseudomonas aeruginosa (strain PA7) | PSEA705901 | DAPF_PSEA7 | Diaminopimelate epimerase |
| BPseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB05591 | DAPF_PSEAB | diaminopimelate epimerase |
| BPseudomonas entomophila (strain L48) | PSEE404978 | DAPF_PSEE4 | diaminopimelate epimerase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| BPseudomonas fluorescens (strain Pf0-1) | PSEPF05473 | DAPF_PSEPF | diaminopimelate epimerase |
| BPseudomonas fluorescens (strain SBW25) | PSEFS03471 | C3K7V6 | |
| BPseudomonas fulva (strain 12-X) | PSEF100377 | F6AGN5 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: psa:PST_0510 diaminopimelate epimerase |
| BPseudomonas mendocina (strain NK-01) | PSEMN00323 | F4DYN7 | diaminopimelate epimerase |
| BPseudomonas mendocina (strain ymp) | PSEMY00263 | DAPF_PSEMY | Diaminopimelate epimerase |
| BPseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) | PSEPK05120 | DAPF_PSEPK | Diaminopimelate epimerase |
| BPseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) | PSEP105071 | A5WAU5 | Diaminopimelate epimerase |
| BPseudomonas putida (strain BIRD-1) | PSEPB04858 | ADR62571.1 | DapF Diaminopimelate epimerase |
| BPseudomonas putida (strain GB-1) | PSEPG05241 | DAPF_PSEPG | Diaminopimelate epimerase unknown EC_number=5.1.1.7 PFAM: diaminopimelate epimerase KEGG: pen:PSEEN5366 diaminopimelate epimerase |
| BPseudomonas putida (strain W619) | PSEPW00244 | DAPF_PSEPW | Diaminopimelate epimerase |
| BPseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) | PSE1404711 | DAPF_PSE14 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BPseudomonas stutzeri (strain A1501) | PSEU500505 | DAPF_PSEU5 | Diaminopimelate epimerase |
| BPseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) | PSEUT00538 | AEJ03828.1 | diaminopimelate epimerase |
| BPseudomonas syringae pv. syringae (strain B728a) | PSEU200181 | DAPF_PSEU2 | diaminopimelate epimerase |
| BPseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) | PSESM00195 | DAPF_PSESM | Diaminopimelate epimerase |
| BCycloclasticus sp. (strain P1) | CYCSP02061 | K0C6E2 | Diaminopimelate epimerase |
| BMethylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) | METFJ02182 | I1YKC4 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BMethylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) | METNJ00633 | I1XGH6 | Diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) | THICA00368 | F6DAQ2 | Diaminopimelate epimerase KEGG: tcx:Tcr_0405 diaminopimelate epimerase; manually curated; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase |
| BThiomicrospira crunogena (strain XCL-2) | THICR00403 | ABB41001.1 | diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: cvi:CV2528 diaminopimelate epimerase |
| BVibrio fischeri (strain ATCC 700601 / ES114) | VIBF102495 | DAPF_VIBF1 | diaminopimelate epimerase |
| BVibrio fischeri (strain MJ11) | VIBFM02497 | B5FCR0 | Diaminopimelate epimerase |
| BAliivibrio salmonicida (strain LFI1238) | ALISL00109 | DAPF_ALISL | Diaminopimelate epimerase |
| BPhotobacterium profundum (strain SS9) | PHOPR05039 | DAPF_PHOPR | putative ribulose-phosphate 3-epimerase predicted by orpheus program predicted by glimmer program |
| BVibrio anguillarum (strain ATCC 68554 / 775) | VIBA700131 | F7YQ86 | Diaminopimelate epimerase |
| BVibrio antiquarius (strain Ex25) | VIBAE00502 | A7K5A2 | diaminopimelate epimerase |
| BVibrio campbellii (strain ATCC BAA-1116 / BB120) | VIBCB02420 | DAPF_VIBCB | diaminopimelate epimerase involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. |
| BVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) | VIBCH00125 | DAPF_VIBCH | Diaminopimelate epimerase |
| BVibrio cholerae serotype O1 (strain MJ-1236) | VIBCJ00532 | ACQ59755.1 | Diaminopimelate epimerase |
| BVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) | VIBC302238 | DAPF_VIBC3 | Diaminopimelate epimerase |
| BVibrio cholerae serotype O1 (strain M66-2) | VIBCM00125 | C3LPW8 | |
| BVibrio furnissii (strain DSM 14383 / NCTC 11218) | VIBFN00414 | F0LQZ4 | diaminopimelate epimerase COG0253 |
| BVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) | VIBPA02972 | DAPF_VIBPA | Diaminopimelate epimerase |
| BVibrio tasmaniensis (strain LGP32) | VIBTL02846 | DAPF_VIBTL | Diaminopimelate epimerase |
| BVibrio vulnificus (strain CMCP6) | VIBVU01028 | DAPF_VIBVU | Diaminopimelate epimerase |
| BVibrio vulnificus (strain MO6-24/O) | VIBVM00101 | ADV85125.1 | diaminopimelate epimerase |
| BVibrio vulnificus (strain YJ016) | VIBVY00087 | DAPF_VIBVY | Diaminopimelate epimerase |
| BFrateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) | FRAAD00306 | H8L319 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BLysobacter enzymogenes | LYSEN04499 | A0A0S2DN70 | diaminopimelate epimerase |
| BPseudoxanthomonas spadix (strain BD-a59) | PSEUP00393 | G7UWD1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BPseudoxanthomonas suwonensis (strain 11-1) | PSEUU00249 | E6WPE0 | diaminopimelate epimerase KEGG: xcv:XCV0689 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BStenotrophomonas maltophilia (strain K279a) | STRMK03823 | B2FUW0 | Putative diaminopimelate epimerase |
| BStenotrophomonas maltophilia (strain R551-3) | STRM503457 | B4SJN4 | Diaminopimelate epimerase |
| BXanthomonas albilineans (strain GPE PC73 / CFBP 7063) | XANAP02498 | D2UF95 | probable diaminopimelate epimerase protein |
| BXanthomonas campestris pv. campestris (strain 8004) | XANC800640 | DAPF_XANC8 | diaminopimelate epimerase |
| BXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) | XANCP03399 | DAPF_XANCP | Diaminopimelate epimerase |
| BXanthomonas campestris pv. campestris (strain B100) | XANCB00690 | DAPF_XANCB | DapF protein |
| BXanthomonas axonopodis pv. citri (strain 306) | XANAC00620 | DAPF_XANAC | Diaminopimelate epimerase |
| BXanthomonas campestris pv. vesicatoria (strain 85-10) | XANC500673 | DAPF_XANC5 | Diaminopimelate epimerase |
| BXanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) | XANOR03739 | Q5GVM2 | Diaminopimelate epimerase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark |
| BXanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM03593 | DAPF_XANOM | diaminopimelate epimerase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| BXanthomonas oryzae pv. oryzae (strain PXO99A) | XANOP00807 | A0A0K0GHA0 | Diaminopimelate epimerase |
| BXylella fastidiosa (strain 9a5c) | XYLFA01449 | DAPF_XYLFA | Diaminopimelate epimerase |
| BXylella fastidiosa (strain M12) | XYLFM00720 | DAPF_XYLFM | Diaminopimelate epimerase |
| BXylella fastidiosa (strain M23) | XYLF200698 | DAPF_XYLF2 | Diaminopimelate epimerase |
| BXylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT00652 | DAPF_XYLFT | Diaminopimelate epimerase |
| BXylella fastidiosa (strain GB514) | XYLFG01654 | ADN63709.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BBaumannia cicadellinicola subsp. Homalodisca coagulata | BAUCH00115 | DAPF_BAUCH | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BVesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) | VESOH00485 | DAPF_VESOH | Diaminopimelate epimerase |
| BRuthia magnifica subsp. Calyptogena magnifica | RUTMC00498 | DAPF_RUTMC | Diaminopimelate epimerase |
| BHalobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) | HALMS02907 | E1WZG0 | Diaminopimelate epimerase |
| BDesulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) | DESB201857 | E1QI49 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: dal:Dalk_0413 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: B8FH34 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfatibacillum alkenivorans (strain AK-01) | DESAA00408 | B8FH34 | Diaminopimelate epimerase |
| BDesulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) | DESAH03628 | DAPF_DESAH | DapF |
| BDesulfobacula toluolica (strain DSM 7467 / Tol2) | DESTT00860 | K0N4N9 | DapF: diaminopimelate epimerase (DAP epimerase) |
| BDesulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) | DESPD00492 | E8RBX6 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: dak:DaAHT2_2216 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfocapsa sulfexigens (strain DSM 10523 / SB164P1) | DESSD00659 | M1P150 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BDesulfohalobium retbaense (strain ATCC 49708 / DSM 5692 / JCM 16813 / HR100) | DESRD01832 | C8X410 | Diaminopimelate epimerase |
| BDesulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) | DESBD00635 | C7LN01 | Diaminopimelate epimerase |
| BDesulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) | DESAO00580 | ADU61618.1 | diaminopimelate epimerase KEGG: dsa:Desal_3708 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BDesulfovibrio alaskensis (strain G20) | DESAG01754 | Q310Q1 | diaminopimelate epimerase |
| BDesulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) | DESDA01126 | DAPF_DESDA | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: cth:Cthe_3100 diaminopimelate epimerase |
| BDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) | DESMR00374 | C4XHA3 | Diaminopimelate epimerase |
| BDesulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) | DESPC01978 | CCH49229.1 | Diaminopimelate epimerase |
| BDesulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) | DESAD03681 | C6BU44 | diaminopimelate epimerase KEGG: dde:Dde_1798 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BDesulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) | DESVH01847 | Q72AX3 | Diaminopimelate epimerase |
| BDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637) | DESVM00556 | B8DKT9 | Diaminopimelate epimerase |
| BDesulfovibrio vulgaris (strain RCH1) | DESVR01419 | A0A0E0T205 | Diaminopimelate epimerase |
| BDesulfovibrio vulgaris subsp. vulgaris (strain DP4) | DESVV01291 | A0A0H3A8D5 | Diaminopimelate epimerase |
| BLawsonia intracellularis (strain PHE/MN1-00) | LAWIP00894 | Q1MPX8 | diaminopimelate epimerase |
| BHippea maritima (strain ATCC 700847 / DSM 10411 / MH2) | HIPMA00257 | F2LXX9 | Diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: ddf:DEFDS_0214 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BPelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) | PELCD03269 | Q39ZZ8 | Diaminopimelate epimerase |
| BPelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) | PELPD03263 | A1AUI6 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: gsu:GSU0531 diaminopimelate epimerase |
| BGeobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) | GEOBB00355 | B5EAT0 | Diaminopimelate epimerase |
| BGeobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) | GEODF01381 | B9M4N3 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: gur:Gura_3911 diaminopimelate epimerase |
| BGeobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) | GEOLS03248 | B3EBJ0 | Diaminopimelate epimerase |
| BGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) | GEOMG02925 | Q39RB7 | diaminopimelate epimerase |
| BGeobacter sp. (strain M18) | GEOS800418 | E8WPE0 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: gem:GM21_0339 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BGeobacter sp. (strain M21) | GEOSM00332 | C6DYE5 | Diaminopimelate epimerase |
| BGeobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) | GEOSL00524 | Q74FS5 | Diaminopimelate epimerase |
| BGeobacter sulfurreducens (strain DL-1 / KN400) | GEOSK00512 | ADI83383.2 | diaminopimelate epimerase |
| BGeobacter uraniireducens (strain Rf4) | GEOUR03747 | A5G8E2 | Diaminopimelate epimerase |
| BAnaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) | ANAD200590 | B8JC32 | Diaminopimelate epimerase |
| BAnaeromyxobacter dehalogenans (strain 2CP-C) | ANADE00568 | Q2ING7 | diaminopimelate epimerase |
| BAnaeromyxobacter sp. (strain K) | ANASK00601 | B4UCM0 | Diaminopimelate epimerase |
| BDesulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) | DESTA03588 | I4C9Y8 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSyntrophobacter fumaroxidans (strain DSM 10017 / MPOB) | SYNFM00056 | A0LEA8 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: sat:SYN_00169 diaminopimelate epimerase |
| BArcobacter butzleri (strain RM4018) | ARCB400144 | A8ER55 | Diaminopimelate epimerase |
| BArcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) | ARCNC00221 | D5V4F8 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: abu:Abu_0144 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: A8ER55 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BCampylobacter concisus (strain 13826) | CAMC100013 | A7ZAX9 | Diaminopimelate epimerase |
| BCampylobacter curvus (strain 525.92) | CAMC500065 | A7GVX7 | Diaminopimelate epimerase |
| BCampylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) | CAMHC00098 | A7HZM9 | Diaminopimelate epimerase |
| BCampylobacter jejuni (strain RM1221) | CAMJR01649 | DAPF_CAMJR | diaminopimelate epimerase identified by similarity to GP:6729756; match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BCampylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) | CAMJD01531 | DAPF_CAMJD | Diaminopimelate epimerase |
| BCampylobacter jejuni subsp. jejuni (strain IA3902) | CAMJI01428 | ADC29082.1 | diaminopimelate epimerase |
| BCampylobacter jejuni subsp. jejuni (strain S3) | CAMJS01566 | ADT73308.1 | Diaminopimelate epimerase |
| BCampylobacter jejuni subsp. jejuni serotype HS21 (strain M1 / 99/308) | CAMJM01422 | ADN91661.1 | Diaminopimelate epimerase |
| BCampylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) | CAMJE01449 | DAPF_CAMJE | Diaminopimelate epimerase |
| BCampylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) | CAMJJ01442 | DAPF_CAMJJ | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| BCampylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) | CAMJ801423 | DAPF_CAMJ8 | Putative diaminopimelate epimerase |
| BCampylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) | CAMLR00053 | DAPF_CAMLR | Diaminopimelate epimerase |
| BSulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3) | SULBS00083 | I3XTZ5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BSulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) | SULD500072 | D1AYX2 | Diaminopimelate epimerase |
| BHelicobacter acinonychis (strain Sheeba) | HELAH00688 | Q17XQ0 | (O25290) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase) High confidence in function and specificity |
| BHelicobacter bizzozeronii (strain CIII-1) | HELBC00284 | F8KR98 | diaminopimelate epimerase |
| BHelicobacter cinaedi (strain PAGU611) | HELCP01073 | BAM12304.1 | diaminopimelate epimerase |
| BHelicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) | HELFC00773 | E7ABR0 | diaminopimelate epimerase |
| BHelicobacter hepaticus (strain ATCC 51449 / 3B1) | HELHP01698 | Q7VFH5 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain 51) | HELP100730 | D0ISR4 | diaminopimelate epimerase similar to HP0566 |
| BHelicobacter pylori (strain 52) | HELP500730 | D0JZV0 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain ATCC 700392 / 26695) | HELPY00550 | DAPF_HELPY | Diaminopimelate epimerase |
| BHelicobacter pylori (strain B38) | HELPB00771 | C7C055 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain B8) | HELP300753 | D7FDR3 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain Cuz20) | HELPC00592 | ADO03785.1 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BHelicobacter pylori (strain F16) | HELPI00789 | E6NE30 | diaminopimelate epimerase |
| BHelicobacter pylori (strain F30) | HELPK00756 | E6NJA5 | diaminopimelate epimerase |
| BHelicobacter pylori (strain F32) | HELPL00538 | E6NP47 | diaminopimelate epimerase |
| BHelicobacter pylori (strain F57) | HELPQ00589 | E6NR99 | diaminopimelate epimerase |
| BHelicobacter pylori (strain G27) | HELPG00508 | DAPF_HELPG | Diaminopimelate epimerase |
| BHelicobacter pylori (strain HPAG1) | HELPH00545 | DAPF_HELPH | diaminopimelate epimerase |
| BHelicobacter pylori (strain India7) | HELP700775 | E8QGC5 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BHelicobacter pylori (strain Lithuania75) | HELPR00521 | E8QP56 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BHelicobacter pylori (strain P12) | HELP200564 | DAPF_HELP2 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain PeCan4) | HELPP00534 | E1Q656 | Diaminopimelate epimerase |
| BHelicobacter pylori (strain SJM180) | HELPM00551 | E1PZ24 | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| BHelicobacter pylori (strain Shi470) | HELPS00774 | DAPF_HELPS | Diaminopimelate epimerase |
| BHelicobacter pylori (strain v225d) | HELPV00543 | D6XPG0 | Diaminopimelate epimerase |
| BSulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) | SULKY00102 | E4TWT9 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510: IPR001653; KEGG: tdn:Suden_2046 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BNautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) | NAUPA01722 | B9L726 | Diaminopimelate epimerase |
| BNitratiruptor sp. (strain SB155-2) | NITSB00102 | DAPF_NITSB | Diaminopimelate epimerase |
| BBrachyspira hyodysenteriae (strain ATCC 49526 / WA1) | BRAHW00906 | DAPF_BRAHW | Diaminopimelate epimerase |
| BBrachyspira intermedia (strain ATCC 51140 / PWS/A) | BRAIP00931 | G0ELR7 | Diaminopimelate epimerase |
| BBrachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) | BRAM502247 | D5U513 | diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase; KEGG: bhy:BHWA1_00918 diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BBrachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) | BRAP900219 | D8IAP7 | diaminopimelate epimerase |
| BLeptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) | LEPBP00576 | B0SJ91 | Diaminopimelate epimerase |
| BLeptospira biflexa serovar Patoc (strain Patoc 1 / Ames) | LEPBA00553 | DAPF_LEPBA | Diaminopimelate epimerase |
| BLeptospira borgpetersenii serovar Hardjo-bovis (strain JB197) | LEPBJ00063 | DAPF_LEPBJ | Diaminopimelate epimerase cytoplasmic protein |
| BLeptospira borgpetersenii serovar Hardjo-bovis (strain L550) | LEPBL02623 | DAPF_LEPBL | Diaminopimelate epimerase cytoplasmic protein |
| BLeptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) | LEPIC00074 | DAPF_LEPIC | Diaminopimelate epimerase |
| BLeptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) | LEPIN00083 | DAPF_LEPIN | Diaminopimelate epimerase |
| BLeptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain IPAV) | LEPII00073 | AER00895.1 | diaminopimelate epimerase |
| BTurneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) | TURPD04027 | I4BBW0 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cth:Cthe_3100 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase |
| BAcetomicrobium mobile (strain ATCC BAA-54 / DSM 13181 / NGA) | ACEMN00037 | I4BTV5 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BAminobacterium colombiense (strain DSM 12261 / ALA-1) | AMICL00226 | D5ECU4 | Diaminopimelate epimerase |
| BThermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) | THEAS00062 | D1B7Q0 | diaminopimelate epimerase KEGG: sat:SYN_00169 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase |
| BThermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) | THELD01616 | G7V850 | diaminopimelate epimerase PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653: IPR018510; KEGG: aco:Amico_0230 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) | THEID01102 | F8A802 | diaminopimelate epimerase COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: sfu:Sfum_0057 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; IMG reference gene:2505284435; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase |
| BThermodesulfobacterium geofontis (strain OPF15) | THEGP00437 | F8C477 | Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dte:Dester_0439 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase |
| BMethylacidiphilum infernorum (isolate V4) | METI401919 | B3DY27 | Diaminopimelate epimerase |
| BOpitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1) | OPITP03846 | B1ZZ82 | Diaminopimelate epimerase |
| BCoraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) | CORAD01579 | D5EJL8 | Diaminopimelate epimerase |
| BAkkermansia muciniphila (strain ATCC BAA-835 / Muc) | AKKM800044 | B2ULA2 | Diaminopimelate epimerase |
