List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 270334
family 17 protein
This group has 6 members: 5 [E]ukaryota 1 [B]acteria
Fingerprint: YSHADRV
| [E] Oryza sativa | ORYSA26228 | BAF30274.1 | Glycosyl transferase, family 17 protein contains InterPro domain(s): IPR006813 has GO asignment(s): GO:0006487, GO:0016020 supported by AK101128 |
| [E] Sorghum bicolor | SORBI30385 | C5YRW2 | jgi|Sorbi1|5045497|Sb08g021190 |
| [E] Populus trichocarpa | POPTR18820 | A9PCR7 | jgi|Poptr1_1|578921|eugene3.00181145 [DNA did not match protein] [DNA partly invalid] |
| [E] Arabidopsis thaliana | ARATH07506 | Q9SKF0 | glycosyl transferase family 17 protein, low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus (SP|Q10470), Rattus norvegicus (SP|Q02527), Homo sapiens (SP|Q09327) ; contains Pfam profile PF04724 :Glycosyltransferase family 17; go_component: endomembrane system [goid GO:0006487@[IEA]; GO:0008375@[ISS]; GO:0012505@[IEA]; GO:0016020@[IEA]; GO:0016757@[ISS]] [evidence IEA]; go_component: membrane [goid GO:0016020] [evidence IEA]; go_function: acetylglucosaminyltransferase activity [goid GO:0008375] [evidence ISS]; go_function: transferase activity, transferring glycosyl groups [goid GO:0016757] [evidence ISS]; go_process: protein amino acid N-linked glycosylation [goid GO:0006487] [evidence IEA]; go_process: peptidoglycan biosynthesis [goid GO:0009252] [evidence IEA] acetylglucosaminyltransferase/ transferase, transferring glycosyl groups |
| [E] Vitis vinifera | VITVI17356 | A7PF77 | |
| [B] Bdellovibrio bacteriovorus | BDEBA01521 | Q6MMG0 | hypothetical protein putative N-acetylglucosaminyltransferase |