| [A] Haloarcula marismortui | HALMA02680 | DNLJ_HALMA | DNA ligase |
| [A] Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) | HALLT02593 | DNLJ_HALLT | DNA ligase, NAD-dependent |
| [A] Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) | NATPD00439 | DNLJ_NATPD | DNA ligase (NAD) |
| [B] Acidobacteria bacterium (strain Ellin345) | ACIBL04645 | DNLJ_ACIBL | DNA ligase, NAD-dependent |
| [B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) | ACIC501719 | DNLJ_ACIC5 | DNA ligase, NAD-dependent |
| [B] Corynebacterium diphtheriae | CORDI01047 | DNLJ_CORDI | Similar to Mycobacterium tuberculosis DNA ligase LigA or Lig or Rv3014c or MT3094 or MTV012.28c SW:DNLJ_MYCTU (O53261) (691 aa) fasta scores: E(): 4.7e-155, 60.86% id in 672 aa, and to Escherichia coli DNA ligase LigA or Lig or DnaL or PdeC or Lop or B2411 SW:DNLJ_ECOLI (P15042) (671 aa) fasta scores: E(): 4.4e-92, 41.58% id in 683 aa DNA ligase |
| [B] Corynebacterium glutamicum | CORGL01882 | DNLJ_CORGL | DNA ligase |
| [B] Corynebacterium glutamicum (strain R) | CORGB01339 | DNLJ_CORGB | Hypothetical protein |
| [B] Corynebacterium jeikeium (strain K411) | CORJK01256 | DNLJ_CORJK | DNA ligase |
| [B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) | CORU700725 | DNLJ_CORU7 | DNA ligase |
| [B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) | MYCA903316 | DNLJ_MYCA9 | DNA ligase |
| [B] Mycobacterium avium (strain 104) | MYCA103647 | DNLJ_MYCA1 | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Mycobacterium gilvum (strain PYR-GCK) | MYCGI04146 | DNLJ_MYCGI | DNA ligase, NAD-dependent KEGG: mva:Mvan_2112 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Mycobacterium leprae | MYCLE01698 | DNLJ_MYCLE | Highly similar to many DNA ligases (EC 6.5.1.2) essential for DNA replication and repair, including: DNLJ_ECOLI and Mycobacterium tuberculosis RV3014C SW:DNLJ_MYCTU (O53261) (691 aa); Fasta score E(): 0, 84.7% identity in 687 aa overlap. Contains Pfam match to entry PF01653 DNA_ligase_N, NAD-dependent DNA ligase. Contains Pfam match to entry PF00533 BRCT, BRCA1 C Terminus (BRCT) domain. Contains PS01055 NAD-dependent DNA ligase signature 1. DNA ligase |
| [B] Mycobacterium leprae (strain Br4923) | MYCLB01688 | DNLJ_MYCLB | DNA ligase |
| [B] Mycobacterium marinum (strain ATCC BAA-535 / M) | MYCMM01657 | DNLJ_MYCMM | DNA ligase [NAD dependent] LigA |
| [B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | MYCS202195 | DNLJ_MYCS2 | DNA ligase, NAD-dependent |
| [B] Mycobacterium sp. (strain JLS) | MYCSJ01819 | DNLJ_MYCSJ | DNA ligase, NAD-dependent KEGG: mmc:Mmcs_1881 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Mycobacterium sp. (strain KMS) | MYCSK01861 | DNLJ_MYCSK | DNA ligase, NAD-dependent KEGG: mmc:Mmcs_1881 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Mycobacterium sp. (strain MCS) | MYCSS01849 | DNLJ_MYCSS | DNA ligase, NAD-dependent |
| [B] Mycobacterium bovis | MYCBO03030 | DNLJ_MYCBO | Mb3039c, ligA, len: 691 aa. Equivalent to Rv3014c, len: 691 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 691 aa overlap). Probable ligA (alternate gene name: lig), DNA ligase NAD-dependent (EC 6.5.1.2), equivalent to O33102|DNLJ_MYCLE|LIGA|LIG|ML1705|MLCB637.10 DNA LIGASE from Mycobacterium leprae (694 aa), FASTA scores: opt: 3844, E(): 0, (84.7% identity in 687 aa overlap). Also highly similar to many prokaryotic and eukaryotic ligases e.g. Q9Z585|LIGA|SC8D9.06 from Streptomyces coelicolor (735 aa), FASTA scores: opt: 2002, E(): 4e-113, (59.4% identity in 714 aa overlap); P49421|DNLJ_RHOMR|LIGA|LIG from Rhodothermus marinus (712 aa), FASTA scores: opt: 1835, E(): 4.6e-103, (45.55% identity in 685 aa overlap); P15042|DNLJ_ECOLI|LIGA|LIG|DNAL|PDEC|LOP|B2411 from Escherichia coli strain K12 (671 aa), FASTA scores: opt: 1696, E(): 1.1e-94, (43.8% identity in 680 aa overlap); etc. BELONGS TO THE NAD-DEPENDENT DNA LIGASE FAMILY. PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) |
| [B] Mycobacterium bovis (strain BCG / Paris 1173P2) | MYCBP03010 | DNLJ_MYCBP | Probable dna ligase [nad dependent] ligA |
| [B] Mycobacterium tuberculosis | MYCTU04144 | DNLJ_MYCTU | DNA ligase |
| [B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) | MYCTA03073 | DNLJ_MYCTA | DNA ligase (NAD dependent) LigA |
| [B] Mycobacterium tuberculosis (strain F11) | MYCTF02946 | A5WRR7 | DNA ligase [NAD dependent] ligA Mapped to H37Rv Rv3014c |
| [B] Mycobacterium ulcerans (strain Agy99) | MYCUA01584 | DNLJ_MYCUA | DNA ligase [NAD dependent] LigA cytoplasmic protein this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'- hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. it is essential for DNA replication and repair of damaged DNA [catalytic activity: NAD(+) + (deoxyribonucleotide)(N) + (deoxyribonucleotide)(M) = AMP + nicotinamide nucleotide + (deoxyribonucleotide)(N+M)] |
| [B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) | MYCVP02023 | DNLJ_MYCVP | DNA ligase, NAD-dependent KEGG: mmc:Mmcs_1881 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Nocardia farcinica | NOCFA04269 | DNLJ2_NOCFA | putative DNA ligase |
| [B] Rhodococcus erythropolis (strain PR4 / NBRC 100887) | RHOE402374 | DNLJ_RHOE4 | NAD(+)-dependent DNA ligase |
| [B] Rhodococcus opacus (strain B4) | RHOOB06517 | DNLJ_RHOOB | NAD(+)-dependent DNA ligase |
| [B] Rhodococcus sp. (strain RHA1) | RHOSR06379 | DNLJ_RHOSR | DNA ligase |
| [B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B) | ACIC100691 | DNLJ_ACIC1 | DNA ligase, NAD-dependent KEGG: mbo:Mb3039c DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold |
| [B] Frankia alni (strain ACN14a) | FRAAA05723 | DNLJ_FRAAA | DNA ligase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| [B] Frankia sp. (strain CcI3) | FRASC03537 | DNLJ_FRASC | DNA ligase, NAD-dependent |
| [B] Frankia sp. (strain EAN1pec) | FRASN01061 | DNLJ_FRASN | DNA ligase, NAD-dependent |
| [B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) | KINRD01311 | DNLJ_KINRD | DNA ligase, NAD-dependent |
| [B] Tropheryma whipplei (strain TW08/27) | TROW800334 | DNLJ_TROW8 | Similar to Rhodothermus marinus DNA ligase LigA or Lig SWALL:DNLJ_RHOMR (SWALL:P49421) (712 aa) fasta scores: E(): 2.1e-36, 35.52% id in 625 aa DNA ligase |
| [B] Tropheryma whipplei (strain Twist) | TROWT00412 | NP_787542.1 | DNA ligase |
| [B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) | CLAM301421 | DNLJ_CLAM3 | NAD-dependant DNA ligase |
| [B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) | CLAMS01010 | DNLJ_CLAMS | DNA ligase |
| [B] Leifsonia xyli (subsp. xyli) | LEIXX01127 | DNLJ_LEIXX | identified by sequence similarity DNA ligase |
| [B] Arthrobacter aurescens (strain TC1) | ARTAT01372 | DNLJ_ARTAT | DNA ligase, NAD-dependent |
| [B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) | ARTCA01327 | DNLJ1_ARTCA | DNA ligase |
| [B] Arthrobacter sp. (strain FB24) | ARTS201288 | DNLJ_ARTS2 | DNA ligase, NAD-dependent KEGG: pac:PPA1626 DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold |
| [B] Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201) | KOCRD01669 | DNLJ_KOCRD | NAD-dependent DNA ligase |
| [B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) | RENSM02829 | DNLJ_RENSM | NAD-dependent DNA ligase |
| [B] Salinispora arenicola (strain CNS-205) | SALAI01078 | DNLJ_SALAI | DNA ligase, NAD-dependent |
| [B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) | SALTO01200 | DNLJ_SALTO | DNA ligase, NAD-dependent |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ03368 | DNLJ_NOCSJ | DNA ligase, NAD-dependent precursor |
| [B] Propionibacterium acnes | PROAC01597 | DNLJ_PROAC | DNA ligase |
| [B] Saccharopolyspora erythraea (strain NRRL 23338) | SACEN05945 | DNLJ_SACEN | DNA ligase, NAD-dependent |
| [B] Streptomyces coelicolor | STRCO05462 | DNLJ1_STRCO | SC8D9.06, ligA, probable DNA ligase, len: 735aa; similar to many eg. SW:DNLJ_ECOLI DNA ligase from Escherichia coli (671 aa) fasta scores; opt: 1318, z-score: 1448.0, E(): 0, (41.6% identity in 694 aa overlap). Contains PS01055 NAD-dependent DNA ligase signature 1. Also contains Pfam match to entry PF00533 BRCT, BRCA1 C Terminus (BRCT) domain, score 41.70, E-value 1.7e-08. putative DNA ligase |
| [B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG01894 | DNLJ2_STRGG | Putative DNA ligase |
| [B] Thermobifida fusca (strain YX) | THEFY00601 | DNLJ_THEFY | NAD-dependent DNA ligase |
| [B] Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) | BIFAA00949 | DNLJ_BIFAA | LigA Orthologue of BL0052 |
| [B] Bifidobacterium longum | BIFLO00052 | DNLJ_BIFLO | DNA ligase |
| [B] Bifidobacterium longum (strain DJO10A) | BIFLD00059 | DNLJ_BIFLD | NAD-dependent DNA ligase |
| [B] Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) | RUBXD00322 | DNLJ_RUBXD | DNA ligase, NAD-dependent KEGG: chy:CHY_1100 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold SMART: Helix-hairpin-helix DNA-binding, class 1 |
| [B] Symbiobacterium thermophilum | SYMTH02779 | DNLJ_SYMTH | NAD-dependent DNA ligase |
| [B] Hydrogenobaculum sp. (strain Y04AAS1) | HYDS000888 | DNLJ_HYDS0 | DNA ligase, NAD-dependent |
| [B] Bacteroides fragilis | BACFR02391 | DNLJ_BACFR | similar to gp:AE016929_164 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 666 aa, BLASTP E(): 0.0 DNA ligase |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN02402 | DNLJ_BACFN | Similar to Escherichia coli DNA ligase LigA or Lig or DnaL or PdeC or Lop or B2411 SWALL:DNLJ_ECOLI (SWALL:P15042) (671 aa) fasta scores: E(): 4.3e-104, 42.75% id in 669 aa, and to Bacteroides thetaiotaomicron DNA ligase BT0894 SWALL:AAO76001 (EMBL:AE016929) (666 aa) fasta scores: E(): 0, 90.24% id in 666 aa putative DNA ligase |
| [B] Bacteroides thetaiotaomicron | BACTN00890 | DNLJ_BACTN | DNA ligase |
| [B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) | BACV803125 | DNLJ_BACV8 | DNA ligase |
| [B] Azobacteroides pseudotrichonymphae genomovar. CFP2 | AZOPC00625 | DNLJ_AZOPC | NAD-dependent DNA ligase |
| [B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) | PARD800763 | DNLJ_PARD8 | DNA ligase |
| [B] Porphyromonas gingivalis | PORGI01059 | DNLJ_PORGI | DNA ligase, NAD-dependent |
| [B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) | PORG301323 | DNLJ_PORG3 | DNA ligase |
| [B] Amoebophilus asiaticus (strain 5a2) | AMOA501176 | DNLJ_AMOA5 | Putative uncharacterized protein |
| [B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) | FLAJ103450 | DNLJ_FLAJ1 | DNA ligase |
| [B] Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) | FLAPJ01792 | DNLJ_FLAPJ | DNA ligase |
| [B] Gramella forsetii (strain KT0803) | GRAFK00626 | DNLJ_GRAFK | DNA ligase |
| [B] Salinibacter ruber (strain DSM 13855) | SALRD00855 | DNLJ_SALRD | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) | CYTH301289 | DNLJ_CYTH3 | DNA ligase |
| [B] Chlamydia muridarum | CHLMU00412 | DNLJ_CHLMU | similar to GB:M24278, SP:P15042, GB:M30255, PID:146613, PID:146615, GB:U00096, PID:1788750, and PID:1816524; identified by sequence similarity; putative DNA ligase |
| [B] Chlamydia trachomatis | CHLTR00148 | DNLJ_CHLTR | DNA Ligase |
| [B] Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) | CHLTA00150 | DNLJ_CHLTA | NAD-dependent DNA ligase |
| [B] Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B) | CHLT200397 | DNLJ_CHLT2 | NAD-dependent DNA ligase |
| [B] Chlamydia trachomatis (strain L2b/UCH-1/proctitis) | CHLTB00397 | DNLJ_CHLTB | NAD-dependent DNA ligase |
| [B] Chlamydia pneumoniae | CHLPN00633 | DNLJ_CHLPN | DNA ligase |
| [B] Chlamydophila abortus | CHLAB00579 | DNLJ_CHLAB | Similar to Bacillus subtilis DNA ligase LigA or Lig or bsu06620 SWALL:DNLJ_BACSU (SWALL:O31498) (668 aa) fasta scores: E(): 6e-97, 40.99% id in 666 aa, and to Chlamydophila caviae DNA ligase LigA or cca00617 SWALL:Q822R2 (EMBL:AE016996) (662 aa) fasta scores: E(): 1.2e-217, 83.63% id in 660 aa, and to Thermoanaerobacter tengcongensis NAD-dependent DNA ligase Lig or tte0605 SWALL:Q8RC42 (EMBL:AE013029) (666 aa) fasta scores: E(): 5.4e-100, 43.6% id in 665 aa putative DNA ligase |
| [B] Chlamydophila caviae | CHLCV00606 | DNLJ_CHLCV | identified by match to PFAM protein family HMM PF03118 DNA ligase |
| [B] Chlamydophila felis (strain Fe/C-56) | CHLFF00387 | DNLJ_CHLFF | DNA ligase EC 6.5.1.2 |
| [B] Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.) | PARUW01755 | DNLJ_PARUW | strongly similar to DNA ligase probable DNA ligase |
| [B] Chlorobaculum parvum (strain NCIB 8327) | CHLP800446 | DNLJ_CHLP8 | DNA ligase, NAD-dependent |
| [B] Chlorobium tepidum | CHLTE00450 | DNLJ_CHLTE | DNA ligase |
| [B] Chlorobium chlorochromatii (strain CaD3) | CHLCH00270 | DNLJ_CHLCH | NAD-dependent DNA ligase |
| [B] Chlorobium phaeobacteroides (strain BS1) | CHLPB00432 | DNLJ_CHLPB | DNA ligase, NAD-dependent |
| [B] Chlorobium phaeobacteroides (strain DSM 266) | CHLPD00441 | DNLJ_CHLPD | DNA ligase, NAD-dependent KEGG: plt:Plut_1699 DNA ligase (NAD+) TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Chloroherpeton thalassium (strain ATCC 35110 / GB-78) | CHLT300089 | DNLJ_CHLT3 | DNA ligase, NAD-dependent |
| [B] Pelodictyon luteolum (strain DSM 273) | PELLD01652 | DNLJ_PELLD | DNA ligase (NAD+) |
| [B] Prosthecochloris aestuarii (strain DSM 271 / SK 413) | PROA200417 | DNLJ_PROA2 | DNA ligase, NAD-dependent |
| [B] Chloroflexus aggregans (strain MD-66 / DSM 9485) | CHLAD03538 | DNLJ_CHLAD | DNA ligase, NAD-dependent |
| [B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) | CHLSY00247 | DNLJ_CHLSY | DNA ligase, NAD-dependent |
| [B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) | CHLAA00236 | DNLJ_CHLAA | DNA ligase, NAD-dependent |
| [B] Roseiflexus castenholzii (strain DSM 13941 / HLO8) | ROSCS00852 | DNLJ_ROSCS | DNA ligase, NAD-dependent KEGG: rrs:RoseRS_4515 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase |
| [B] Roseiflexus sp. (strain RS-1) | ROSS104380 | DNLJ_ROSS1 | DNA ligase, NAD-dependent |
| [B] Dehalococcoides ethenogenes (strain 195) | DEHE100536 | DNLJ_DEHE1 | identified by match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Dehalococcoides sp. (strain BAV1) | DEHSB00550 | DNLJ_DEHSB | DNA ligase, NAD-dependent |
| [B] Dehalococcoides sp. (strain CBDB1) | DEHSC00480 | DNLJ_DEHSC | DNA ligase, NAD-dependent |
| [B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) | HERA200804 | DNLJ_HERA2 | DNA ligase, NAD-dependent |
| [B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) | THERP00206 | DNLJ_THERP | DNA ligase, NAD-dependent |
| [B] Acaryochloris marina (strain MBIC 11017) | ACAM101085 | DNLJ_ACAM1 | DNA ligase, NAD-dependent |
| [B] Cyanothece (strain ATCC 51142) | CYAA501798 | DNLJ_CYAA5 | DNA ligase |
| [B] Cyanothece sp. (strain PCC 7425 / ATCC 29141) | CYAP400458 | DNLJ_CYAP4 | DNA ligase |
| [B] Gloeobacter violaceus | GLOVI00725 | DNLJ_GLOVI | DNA ligase |
| [B] Microcystis aeruginosa (strain NIES-843) | MICAN01219 | DNLJ_MICAN | DNA ligase |
| [B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) | SYNP202603 | DNLJ_SYNP2 | DNA ligase, NAD-dependent |
| [B] Synechococcus sp. (strain CC9311) | SYNS302744 | DNLJ_SYNS3 | DNA ligase, NAD-dependent |
| [B] Synechococcus sp. (strain CC9605) | SYNSC02491 | DNLJ_SYNSC | DNA ligase, NAD-dependent |
| [B] Synechococcus sp. (strain CC9902) | SYNS902185 | DNLJ_SYNS9 | DNA ligase (NAD+) |
| [B] Synechococcus sp. (strain JA-3-3Ab) | SYNJA00755 | DNLJ_SYNJA | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Synechococcus sp. (strain PCC 6301) | SYNP601231 | DNLJ_SYNP6 | DNA ligase |
| [B] Synechococcus sp. (strain RCC307) | SYNR302406 | DNLJ_SYNR3 | NAD-dependent DNA ligase |
| [B] Synechococcus sp. (strain WH7803) | SYNPW02425 | DNLJ_SYNPW | NAD-dependent DNA ligase |
| [B] Synechococcus sp. (strain WH8102) | SYNPX02386 | DNLJ_SYNPX | DNA ligase |
| [B] Synechocystis sp. (strain PCC 6803) | SYNY300009 | DNLJ_SYNY3 | DNA ligase |
| [B] Thermosynechococcus elongatus (strain BP-1) | THEEB00835 | DNLJ_THEEB | DNA ligase |
| [B] Anabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT00309 | DNLJ_ANAVT | NAD-dependent DNA ligase |
| [B] Anabaena sp. (strain PCC 7120) | ANASP01700 | DNLJ_ANASP | DNA ligase |
| [B] Trichodesmium erythraeum (strain IMS101) | TRIEI01951 | DNLJ_TRIEI | DNA ligase, NAD-dependent |
| [B] Prochlorococcus marinus | PROMA01837 | DNLJ_PROMA | contains BRCT domain type II NAD-dependent DNA ligase |
| [B] Prochlorococcus marinus (strain MIT 9211) | PROM401807 | DNLJ_PROM4 | DNA ligase |
| [B] Prochlorococcus marinus (strain MIT 9303) | PROM302866 | DNLJ_PROM3 | NAD-dependent DNA ligase |
| [B] Prochlorococcus marinus (strain MIT 9313) | PROMM02174 | DNLJ_PROMM | BRCT domain:NAD-dependent DNA ligase N-terminus:NAD-dependent... |
| [B] Prochlorococcus marinus (strain NATL1A) | PROM102123 | DNLJ_PROM1 | NAD-dependent DNA ligase |
| [B] Prochlorococcus marinus (strain NATL2A) | PROMT02090 | DNLJ_PROMT | NAD-dependent DNA ligase |
| [B] Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) | DEIDV01346 | DNLJ2_DEIDV | Putative DNA ligase |
| [B] Deinococcus geothermalis (strain DSM 11300) | DEIGD00688 | DNLJ_DEIGD | DNA ligase, NAD-dependent KEGG: dra:DR2069 DNA ligase, ev=0.0, 79% identity TIGRFAM: DNA ligase, NAD-dependent: (0) PFAM: helix-hairpin-helix motif: (0.00049) BRCT: (6.6e-17) NAD-dependent DNA ligase: (8.3e-139) zinc-finger, NAD-dependent DNA ligase C4-type: (1.6e-13) NAD-dependent DNA ligase, OB-fold: (6.7e-49) SMART: Helix-hairpin-helix DNA-binding, class 1: (0.4) |
| [B] Deinococcus radiodurans | DEIRA02009 | DNLJ_DEIRA | DNA ligase |
| [B] Bacillus amyloliquefaciens (strain FZB42) | BACA200639 | DNLJ_BACA2 | LigA |
| [B] Bacillus anthracis | BACAN00281 | DNLJ_BACAN | similar to SP:O87703; identified by sequence similarity; putative DNA ligase, NAD-dependent |
| [B] Bacillus cereus (strain AH187) | BACC700283 | DNLJ_BACC7 | DNA ligase |
| [B] Bacillus cereus (strain ATCC 10987) | BACC100328 | DNLJ_BACC1 | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Bacillus cereus (strain ATCC 14579 / DSM 31) | BACCR00269 | DNLJ_BACCR | NAD-dependent DNA ligase |
| [B] Bacillus cereus (strain G9842) | BACC200270 | DNLJ_BACC2 | DNA ligase |
| [B] Bacillus cereus (strain ZK) | BACCZ00269 | DNLJ_BACCZ | DNA ligase(NAD+) (NAD-dependent DNA ligase) |
| [B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98) | BACCN00273 | DNLJ_BACCN | DNA ligase, NAD-dependent |
| [B] Bacillus clausii (strain KSM-K16) | BACSK01081 | DNLJ_BACSK | NAD-dependent polydeoxyribonucleotide synthase DNA ligase |
| [B] Bacillus halodurans | BACHD00638 | DNLJ_BACHD | DNA ligase (polydeoxyribonucleotide synthase (NAD+)) |
| [B] Bacillus licheniformis (strain DSM 13 / ATCC 14580) | BACLD00658 | DNLJ_BACLD | InterProMatches:IPR001679; Molecular Function: DNA ligase (NAD+) activity (GO:0003911), Biological Process: DNA replication (GO:0006260), Biological Process: DNA repair (GO:0006281) DNA ligase |
| [B] Bacillus pumilus (strain SAFR-032) | BACP200617 | DNLJ_BACP2 | DNA ligase |
| [B] Bacillus subtilis | BACSU00661 | DNLJ_BACSU | DNA ligase |
| [B] Bacillus thuringiensis (strain Al Hakam) | BACAH00275 | DNLJ_BACAH | NAD-dependent DNA ligase |
| [B] Bacillus thuringiensis (subsp. konkukian) | BACHK00266 | DNLJ_BACHK | DNA ligase(NAD+) (NAD-dependent DNA ligase) |
| [B] Bacillus weihenstephanensis (strain KBAB4) | BACWK00284 | DNLJ_BACWK | DNA ligase, NAD-dependent |
| [B] Geobacillus kaustophilus | GEOKA00271 | DNLJ_GEOKA | DNA ligase (polydeoxyribonucleotide synthase[NAD+]) |
| [B] Geobacillus thermodenitrificans (strain NG80-2) | GEOTN00250 | DNLJ_GEOTN | DNA ligase |
| [B] Lysinibacillus sphaericus (strain C3-41) | LYSSC00211 | DNLJ_LYSSC | DNA ligase |
| [B] Oceanobacillus iheyensis | OCEIH00765 | DNLJ_OCEIH | CDS_ID OB0760; polydeoxyribonucleotide synthase[NAD+] DNA ligase |
| [B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) | EXIS200457 | DNLJ_EXIS2 | DNA ligase, NAD-dependent |
| [B] Listeria innocua | LISIN01848 | DNLJ_LISIN | similar to DNA ligase |
| [B] Listeria monocytogenes | LISMO01754 | DNLJ_LISMO | similar to DNA ligase |
| [B] Listeria monocytogenes (serotype 4b / strain F2365) | LISMF01763 | DNLJ_LISMF | identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Listeria monocytogenes serotype 4a (strain HCC23) | LISMH00791 | DNLJ_LISMH | DNA ligase, NAD-dependent |
| [B] Listeria monocytogenes serotype 4b (strain Clip81459) | LISMC01742 | DNLJ_LISMC | Putative DNA ligase |
| [B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) | LISW601773 | DNLJ_LISW6 | LigA protein |
| [B] Macrococcus caseolyticus (strain JCSC5402) | MACCJ01643 | DNLJ_MACCJ | DNA ligase |
| [B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN00685 | DNLJ_BREBN | NAD-dependent DNA ligase |
| [B] Staphylococcus aureus (strain COL) | STAAC01915 | DNLJ_STAAC | identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Staphylococcus aureus (strain JH1) | STAA201936 | DNLJ_STAA2 | DNA ligase, NAD-dependent KEGG: sav:SAV1904 DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase |
| [B] Staphylococcus aureus (strain JH9) | STAA901908 | DNLJ_STAA9 | DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Staphylococcus aureus (strain MRSA252) | STAAR01932 | DNLJ_STAAR | Previously sequenced as Staphylococcus aureus DNA ligase Lig TR:Q9AIU7 (EMBL:AF234833) (667 aa) fasta scores: E(): 0, 99.55% id in 667 aa. Similar to Bacillus subtilis DNA ligase LigA SW:DNLJ_BACSU (O31498) (668 aa) fasta scores: E(): 4.1e-153, 61.79% id in 657 aa DNA ligase |
| [B] Staphylococcus aureus (strain MSSA476) | STAAS01836 | DNLJ_STAAS | Ortholog of S. aureus MRSA252 (BX571856) SAR1996 DNA ligase |
| [B] Staphylococcus aureus (strain MW2) | STAAW01844 | DNLJ_STAAW | polydeoxyribonucleotide syntase DNA ligase |
| [B] Staphylococcus aureus (strain Mu3 / ATCC 700698) | STAA101871 | DNLJ_STAA1 | DNA ligase |
| [B] Staphylococcus aureus (strain Mu50 / ATCC 700699) | STAAM01888 | DNLJ_STAAM | SAV1904 polydeoxyribonucleotide syntase [NAD+] DNA ligase |
| [B] Staphylococcus aureus (strain N315) | STAAN01754 | DNLJ_STAAN | DNA ligase (polydeoxyribonucleotide syntase) |
| [B] Staphylococcus aureus (strain NCTC 8325) | STAA802000 | DNLJ_STAA8 | DNA ligase, NAD-dependent |
| [B] Staphylococcus aureus (strain Newman) | STAAE01799 | DNLJ_STAAE | DNA ligase |
| [B] Staphylococcus aureus (strain USA300 / TCH1516) | STAAT01860 | DNLJ_STAAT | DNA ligase (NAD(+)) |
| [B] Staphylococcus aureus (strain USA300) | STAA301812 | DNLJ_STAA3 | DNA ligase identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Staphylococcus aureus (strain bovine RF122) | STAAB01830 | DNLJ_STAAB | DNA ligase |
| [B] Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) | STAS100886 | DNLJ_STAS1 | similar to gi|27468507|ref|NP_765144.1| [Staphylococcus epidermidis ATCC 12228], percent identity 82 in 665 aa, BLASTP E(): 0.0 NAD-dependent DNA ligase |
| [B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320) | ANATD01532 | DNLJ_ANATD | DNA ligase, NAD-dependent |
| [B] Alkaliphilus metalliredigens (strain QYMF) | ALKMQ00859 | DNLJ_ALKMQ | DNA ligase, NAD-dependent |
| [B] Alkaliphilus oremlandii (strain OhILAs) | ALKOO00539 | DNLJ_ALKOO | DNA ligase, NAD-dependent |
| [B] Clostridium acetobutylicum | CLOAB02631 | DNLJ2_CLOAB | NAD-dependent DNA ligase |
| [B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) | CLOB800348 | DNLJ_CLOB8 | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain ATCC 19397 / Type A) | CLOB103176 | DNLJ_CLOB1 | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain Alaska E43 / type E3) | CLOBA00362 | DNLJ_CLOBA | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain Eklund 17B / type B) | CLOBB00378 | DNLJ_CLOBB | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) | CLOBH03274 | DNLJ_CLOBH | DNA ligase |
| [B] Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) | CLOBL03246 | DNLJ_CLOBL | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain Loch Maree / Type A3) | CLOBM03251 | DNLJ_CLOBM | DNA ligase, NAD-dependent |
| [B] Clostridium botulinum (strain Okra / Type B1) | CLOBK03267 | DNLJ_CLOBK | DNA ligase, NAD-dependent |
| [B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) | CLOCE01868 | DNLJ_CLOCE | DNA ligase, NAD-dependent KEGG: cpy:Cphy_2927 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase |
| [B] Clostridium difficile (strain 630) | CLOD603349 | DNLJ_CLOD6 | DNA ligase |
| [B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) | CLOK503319 | DNLJ_CLOK5 | LigA1 |
| [B] Clostridium novyi (strain NT) | CLONN01915 | DNLJ_CLONN | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Clostridium perfringens | CLOPE02259 | DNLJ_CLOPE | DNA ligase |
| [B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237) | CLOP102454 | DNLJ_CLOP1 | DNA ligase, NAD-dependent identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Clostridium perfringens (strain SM101) | CLOPS02159 | DNLJ_CLOPS | DNA ligase, NAD-dependent identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) | CLOPH02882 | DNLJ_CLOPH | DNA ligase, NAD-dependent |
| [B] Clostridium tetani | CLOTE02125 | DNLJ_CLOTE | NAD-dependent DNA ligase |
| [B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237) | CLOTH00994 | DNLJ_CLOTH | DNA ligase, NAD-dependent |
| [B] Finegoldia magna (strain ATCC 29328) | FINM200569 | DNLJ_FINM2 | NAD-dependent DNA ligase |
| [B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) | HELMI02828 | DNLJ_HELMI | DNA ligase, nad-dependent |
| [B] Desulforudis audaxviator (strain MP104C) | DESAP01532 | DNLJ_DESAP | DNA ligase, NAD-dependent |
| [B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) | CARHZ01070 | DNLJ_CARHZ | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Desulfitobacterium hafniense (strain Y51) | DESHY03852 | DNLJ_DESHY | hypothetical protein similarity to COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)(Evalue: 0) |
| [B] Desulfotomaculum reducens (strain MI-1) | DESRM02246 | DNLJ_DESRM | DNA ligase, NAD-dependent |
| [B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) | PELTS02486 | DNLJ_PELTS | NAD-dependent DNA ligase |
| [B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) | CALS801609 | DNLJ_CALS8 | DNA ligase, NAD-dependent |
| [B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen) | SYNWW00342 | DNLJ_SYNWW | DNA ligase |
| [B] Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) | HALOH00216 | DNLJ_HALOH | DNA ligase |
| [B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) | NATTJ00449 | DNLJ_NATTJ | DNA ligase, NAD-dependent |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP301613 | DNLJ_THEP3 | DNA ligase, NAD-dependent |
| [B] Thermoanaerobacter sp. (strain X514) | THEPX00514 | DNLJ_THEPX | DNA ligase, NAD-dependent |
| [B] Thermoanaerobacter tengcongensis | THETN00545 | DNLJ_THETN | Best Blastp hit = gi|7673996|sp|O87703|DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) gi|3688229|emb|CAA09732.1| (AJ011676) DNA ligase [Bacillus stearothermophilus], score 712, E-value 0 NAD-dependent DNA ligase (contains BRCT domain type II) |
| [B] Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) | COPPD00130 | DNLJ_COPPD | DNA ligase, NAD-dependent |
| [B] Enterococcus faecalis | ENTFA00648 | DNLJ_ENTFA | DNA ligase |
| [B] Lactobacillus acidophilus | LACAC00502 | DNLJ_LACAC | DNA ligase |
| [B] Lactobacillus brevis (strain ATCC 367 / JCM 1170) | LACBA01519 | DNLJ_LACBA | NAD-dependent DNA ligase |
| [B] Lactobacillus casei (strain ATCC 334) | LACC300946 | DNLJ_LACC3 | NAD-dependent DNA ligase |
| [B] Lactobacillus casei (strain BL23) | LACCB01145 | DNLJ_LACCB | DNA ligase |
| [B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) | LACDA00450 | DNLJ_LACDA | NAD-dependent DNA ligase |
| [B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) | LACDB00364 | DNLJ_LACDB | NAD-dependent DNA ligase |
| [B] Lactobacillus fermentum (strain IFO 3956 / LMG 18251) | LACF301453 | DNLJ_LACF3 | NAD-dependent DNA ligase |
| [B] Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) | LACGA01392 | DNLJ_LACGA | NAD-dependent DNA ligase |
| [B] Lactobacillus helveticus (strain DPC 4571) | LACH400429 | DNLJ_LACH4 | DNA ligase |
| [B] Lactobacillus johnsonii | LACJO01505 | DNLJ_LACJO | NAD-dependent DNA ligase |
| [B] Lactobacillus plantarum | LACPL00959 | DNLJ_LACPL | DNA ligase (NAD+) |
| [B] Lactobacillus reuteri (strain DSM 20016) | LACRD01379 | DNLJ_LACRD | DNA ligase |
| [B] Lactobacillus reuteri (strain JCM 1112) | LACRJ01328 | DNLJ_LACRJ | NAD-dependent DNA ligase |
| [B] Lactobacillus sakei subsp. sakei (strain 23K) | LACSS01539 | DNLJ_LACSS | NAD-dependent DNA ligase |
| [B] Lactobacillus salivarius subsp. salivarius (strain UCC118) | LACS101319 | DNLJ_LACS1 | NAD-dependent DNA ligase COG0272 [L] NAD-dependent DNA ligase (contains BRCT domain type II) |
| [B] Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) | PEDPA01522 | DNLJ_PEDPA | NAD-dependent DNA ligase |
| [B] Leuconostoc citreum (strain KM20) | LEUCK00473 | DNLJ_LEUCK | DNA ligase, NAD-dependent |
| [B] Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) | LEUMM00510 | DNLJ_LEUMM | NAD-dependent DNA ligase |
| [B] Oenococcus oeni (strain BAA-331 / PSU-1) | OENOB00377 | DNLJ_OENOB | NAD-dependent DNA ligase |
| [B] Lactococcus lactis subsp. cremoris (strain MG1363) | LACLM00433 | DNLJ_LACLM | DNA ligase |
| [B] Lactococcus lactis subsp. cremoris (strain SK11) | LACLS00429 | DNLJ_LACLS | NAD-dependent DNA ligase |
| [B] Lactococcus lactis subsp. lactis | LACLA00405 | DNLJ_LACLA | DNA ligase |
| [B] Streptococcus agalactiae (serotype III) | STRA300817 | DNLJ_STRA3 | similar to DNA ligase Unknown |
| [B] Streptococcus agalactiae (serotype V) | STRA500825 | DNLJ_STRA5 | identified by match to PFAM protein family HMM PF00533 DNA ligase, NAD-dependent |
| [B] Streptococcus agalactiae serotype Ia | STRA100859 | DNLJ_STRA1 | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Streptococcus equi subsp. equi (strain 4047) | STRE400820 | DNLJ_STRE4 | DNA ligase |
| [B] Streptococcus equi subsp. zooepidemicus (strain H70) | STRS701172 | C0MH83 | DNA ligase Ortholog of S. equi 4047 (FM204883) SEQ0906 |
| [B] Streptococcus equi subsp. zooepidemicus (strain MGCS10565) | STREM00745 | DNLJ_STREM | DNA ligase LigA |
| [B] Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) | STRGC01348 | DNLJ_STRGC | DNA ligase, NAD-dependent |
| [B] Streptococcus mutans | STRMU01388 | DNLJ_STRMU | Best Blastp Hit: sp|O87703|DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) >gi|3688229|emb|CAA09732.1| (AJ011676) DNA ligase [Bacillus stearothermophilus] DNA ligase |
| [B] Streptococcus pneumoniae | STRPN01027 | DNLJ_STRPN | identified by match to PFAM protein family HMM PF01653 DNA ligase, NAD-dependent |
| [B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6) | STRR601018 | DNLJ_STRR6 | DNA ligase |
| [B] Streptococcus pneumoniae (strain CGSP14) | STRPS01148 | DNLJ_STRPS | DNA ligase |
| [B] Streptococcus pneumoniae (strain Hungary19A-6) | STRPI01101 | DNLJ_STRPI | DNA ligase, NAD-dependent |
| [B] Streptococcus pneumoniae (strain JJA) | STRZJ00997 | DNLJ_STRZJ | DNA ligase, NAD-dependent |
| [B] Streptococcus pneumoniae (strain P1031) | STRZP01018 | DNLJ_STRZP | DNA ligase, NAD-dependent |
| [B] Streptococcus pneumoniae serotype 19F (strain G54) | STRP401014 | DNLJ_STRP4 | DNA ligase, NAD-dependent |
| [B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) | STRP200940 | DNLJ_STRP2 | DNA ligase, NAD-dependent equivalent gene in S.pneumoniae TIGR4 = SP1117; equivalent gene in S.pneumoniae R6 = spr1024; identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Streptococcus pyogenes (serotype M18) | STRP800637 | DNLJ_STRP8 | best blastp match gb|AAK33695.1| (AE006527) putative DNA ligase [Streptococcus pyogenes M1 GAS] putative DNA ligase |
| [B] Streptococcus pyogenes (serotype M3) | STRP300490 | DNLJ_STRP3 | best blastp hit: gb|AAK33695.1| (AE006527) putative DNA ligase [Streptococcus pyogenes M1 GAS] putative DNA ligase |
| [B] Streptococcus pyogenes (serotype M6) | STRP600587 | DNLJ_STRP6 | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M1 | STRP101097 | DNLJ_STRP1 | DNA ligase |
| [B] Streptococcus pyogenes serotype M12 (strain MGAS2096) | STRPB00623 | DNLJ_STRPB | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M12 (strain MGAS9429) | STRPC00619 | DNLJ_STRPC | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M2 (strain MGAS10270) | STRPD00612 | DNLJ_STRPD | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M28 | STRPM00546 | DNLJ_STRPM | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M4 (strain MGAS10750) | STRPF00645 | DNLJ_STRPF | NAD-dependent DNA ligase |
| [B] Streptococcus pyogenes serotype M49 (strain NZ131) | STRPZ00541 | DNLJ_STRPZ | DNA ligase |
| [B] Streptococcus pyogenes serotype M5 (strain Manfredo) | STRPG01205 | DNLJ_STRPG | DNA ligase |
| [B] Streptococcus sanguinis (strain SK36) | STRSV01406 | DNLJ_STRSV | DNA ligase, putative |
| [B] Streptococcus suis (strain 05ZYH33) | STRSY01166 | DNLJ_STRSY | NAD-dependent DNA ligase |
| [B] Streptococcus suis (strain 98HAH33) | STRS201185 | DNLJ_STRS2 | NAD-dependent DNA ligase |
| [B] Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) | STRT201413 | DNLJ_STRT2 | DNA ligase |
| [B] Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) | STRTD01261 | ABJ66666.1 | NAD-dependent DNA ligase |
| [B] Streptococcus thermophilus (strain CNRZ 1066) | STRT101454 | DNLJ_STRT1 | DNA ligase |
| [B] Fusobacterium nucleatum subsp. nucleatum | FUSNN00210 | DNLJ_FUSNN | DNA ligase |
| [B] Rhodopirellula baltica | RHOBA05862 | DNLJ_RHOBA | PMID: 10407164 PMID: 10368271 best DB hits: BLAST: swissprot:O87703; DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-135 swissprot:O31498; DNLJ_BACSU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-135 swissprot:P15042; DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-133 COG: BS_yerG; COG0272 NAD-dependent DNA ligase (contains BRCT domain type; E=1e-136 lig; COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); E=1e-134 BH0649; COG0272 NAD-dependent DNA ligase (contains BRCT domain type; E=1e-134 PFAM: PF01653; NAD-dependent DNA ligase; E=4.3e-103 PF00633; Helix-hairpin-helix motif.; E=0.3 PF00533; BRCA1 C Terminus (BRCT) domain; E=9.8e-16 DNA ligase |
| [B] Caulobacter crescentus | CAUCR01500 | DNLJ_CAUCR | DNA ligase |
| [B] Caulobacter sp. (strain K31) | CAUSK03036 | DNLJ_CAUSK | DNA ligase, NAD-dependent |
| [B] Phenylobacterium zucineum (strain HLK1) | PHEZH02298 | DNLJ_PHEZH | DNA ligase, NAD-dependent |
| [B] Bartonella bacilliformis (strain ATCC 35685 / KC583) | BARBK00849 | DNLJ_BARBK | DNA ligase, NAD-dependent |
| [B] Bartonella henselae | BARHE01054 | DNLJ_BARHE | DNA ligase |
| [B] Bartonella quintana | BARQU00845 | DNLJ_BARQU | DNA ligase |
| [B] Bartonella tribocorum (strain CIP 105476 / IBS 506) | BART101263 | DNLJ_BART1 | DNA ligase hypothetical protein |
| [B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII900694 | DNLJ_BEII9 | DNA ligase, NAD-dependent |
| [B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) | METSB03401 | DNLJ_METSB | DNA ligase, NAD-dependent |
| [B] Bradyrhizobium japonicum | BRAJA06533 | DNLJ_BRAJA | DNA ligase |
| [B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB05746 | DNLJ_BRASB | DNA ligase (Polydeoxyribonucleotide synthase |
| [B] Bradyrhizobium sp. (strain ORS278) | BRASO05330 | DNLJ_BRASO | DNA ligase |
| [B] Nitrobacter hamburgensis (strain X14 / DSM 10229) | NITHX01197 | DNLJ_NITHX | DNA ligase, NAD-dependent |
| [B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | NITWN01004 | DNLJ_NITWN | NAD-dependent DNA ligase |
| [B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) | OLICO01234 | DNLJ_OLICO | DNA ligase, NAD-dependent |
| [B] Rhodopseudomonas palustris | RHOPA03504 | NP_948855.1 | DNA ligase |
| [B] Rhodopseudomonas palustris (strain BisA53) | RHOP502090 | ABJ06065.1 | DNA ligase, NAD-dependent KEGG: rpb:RPB_2008 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold |
| [B] Rhodopseudomonas palustris (strain BisB5) | RHOPS03358 | DNLJ_RHOPS | DNA ligase, NAD-dependent |
| [B] Rhodopseudomonas palustris (strain HaA2) | RHOP202003 | DNLJ_RHOP2 | DNA ligase, NAD-dependent |
| [B] Rhodopseudomonas palustris (strain TIE-1) | RHOPT03965 | DNLJ_RHOPT | DNA ligase, NAD-dependent |
| [B] Brucella abortus | BRUAB01314 | DNLJ_BRUAB | similar to BR1420, DNA ligase, NAD-dependent LigA, DNA ligase, NAD-dependent |
| [B] Brucella abortus (strain 2308) | BRUA201425 | DNLJ_BRUA2 | BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A (P-loop):Zn-finger in NAD-dependent DNA ligase, C4 type:NAD... |
| [B] Brucella abortus (strain S19) | BRUA101272 | DNLJ_BRUA1 | DNA ligase |
| [B] Brucella canis (strain ATCC 23365 / NCTC 10854) | BRUC201368 | DNLJ_BRUC2 | DNA ligase, NAD-dependent |
| [B] Brucella melitensis | BRUME00587 | DNLJ_BRUME | NAD-DEPENDENT DNA LIGASE |
| [B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) | BRUO201221 | DNLJ_BRUO2 | DNA ligase, NAD-dependent |
| [B] Brucella suis | BRUSU01367 | DNLJ_BRUSU | similar to GB:X12597, GB:L13805, SP:P09429, PID:1435197, PID:32327, and PID:968888; identified by sequence similarity; putative DNA ligase, NAD-dependent |
| [B] Brucella suis (strain ATCC 23445 / NCTC 10510) | BRUSI01383 | DNLJ_BRUSI | DNA ligase, NAD-dependent GO_function: DNA ligase (NAD+) activity [GO ID 0003911]; GO_process: DNA repair [GO ID 0006281] |
| [B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) | OCHA401730 | DNLJ_OCHA4 | DNA ligase, NAD-dependent |
| [B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) | METC404881 | DNLJ_METC4 | DNA ligase, NAD-dependent KEGG: mex:Mext_4642 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase |
| [B] Methylobacterium extorquens (strain PA1) | METEP04574 | DNLJ_METEP | DNA ligase, NAD-dependent |
| [B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) | METPB05045 | DNLJ_METPB | DNA ligase, NAD-dependent |
| [B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) | METRJ00011 | DNLJ_METRJ | DNA ligase, NAD-dependent |
| [B] Methylobacterium sp. (strain 4-46) | METS401579 | DNLJ_METS4 | DNA ligase, NAD-dependent |
| [B] Mesorhizobium sp. (strain BNC1) | MESSB01984 | DNLJ_MESSB | DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT NAD-dependent DNA ligase NAD-dependent DNA ligase, OB-fold KEGG: bja:bll6591 DNA ligase |
| [B] Rhizobium loti | RHILO01207 | DNLJ_RHILO | DNA ligase |
| [B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) | PARL102363 | DNLJ_PARL1 | DNA ligase, NAD-dependent |
| [B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868) | AGRRK02238 | DNLJ_AGRRK | DNA ligase, NAD-dependent |
| [B] Agrobacterium tumefaciens (strain C58 / ATCC 33970) | AGRT502029 | DNLJ_AGRT5 | DNA ligase |
| [B] Rhizobium etli (strain CFN 42 / ATCC 51251) | RHIEC02767 | DNLJ_RHIEC | DNA ligase (NAD+) protein similar to LigA [Zymomonas mobilis] and ligA (SMc01878) [Sinorhizobium meliloti] Similar to entrez-protein:P28719 Putative location:bacterial cytoplasm Psort-Score: 0.3209; go_component: intracellular [goid 0005622]; go_function: DNA binding [goid 0003677]; go_function: ligase activity [goid 0016874]; go_function: DNA ligase (NAD+) activity [goid 0003911]; go_process: DNA replication [goid 0006260]; go_process: DNA repair [goid 0006281] |
| [B] Rhizobium etli (strain CIAT 652) | RHIE602942 | DNLJ_RHIE6 | DNA ligase (NAD+) protein |
| [B] Rhizobium leguminosarum bv. trifolii (strain WSM2304) | RHILW02539 | DNLJ_RHILW | DNA ligase |
| [B] Rhizobium leguminosarum bv. viciae (strain 3841) | RHIL303282 | DNLJ_RHIL3 | putative DNA ligase similarity:fasta; with=UniProt:DNLJ_ECOLI (EMBL:ECD870); Escherichia coli.; ligA; DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]).; length=671; id 47.117; 711 aa overlap; query 13-716; subject 1-669 similarity:fasta; with=UniProt:Q92NM8_RHIME (EMBL:SME591789); Rhizobium meliloti (Sinorhizobium meliloti).; PROBABLE DNA LIGASE PROTEIN (EC 6.5.1.2).; length=717; id 79.109; 718 aa overlap; query 1-718; subject 1-717 |
| [B] Rhizobium meliloti | RHIME02140 | DNLJ_RHIME | Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE DNA LIGASE PROTEIN |
| [B] Sinorhizobium medicae (strain WSM419) | SINMW02021 | DNLJ_SINMW | DNA ligase |
| [B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) | AZOC500149 | DNLJ_AZOC5 | NAD-dependent DNA ligase |
| [B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) | XANP201701 | DNLJ_XANP2 | DNA ligase, NAD-dependent |
| [B] Hyphomonas neptunium (strain ATCC 15444) | HYPNA00382 | DNLJ_HYPNA | DNA ligase, NAD-dependent |
| [B] Maricaulis maris (strain MCS10) | MARMM02060 | DNLJ_MARMM | DNA ligase, NAD-dependent |
| [B] Dinoroseobacter shibae (strain DFL 12) | DINSH01493 | DNLJ_DINSH | DNA ligase, NAD-dependent |
| [B] Jannaschia sp. (strain CCS1) | JANSC02496 | DNLJ_JANSC | DNA ligase, NAD-dependent |
| [B] Paracoccus denitrificans (strain Pd 1222) | PARDP03971 | DNLJ_PARDP | DNA ligase, NAD-dependent KEGG: sil:SPO1680 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) | RHOS401209 | DNLJ_RHOS4 | From CDD: NAD-dependent DNA ligase (contains BRCT domain type II) Citation: Wilkinson A, Day J, Bowater R. Bacterial DNA ligases. Mol Microbiol. 2001 Jun;40(6):1241-8. Review. PMID: 11442824 DNA ligase |
| [B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | RHOS501127 | DNLJ_RHOS5 | DNA ligase, NAD-dependent |
| [B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) | RHOS101253 | DNLJ_RHOS1 | DNA ligase, NAD-dependent KEGG: rsp:RSP_2622 DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085) | RHOSK00919 | DNLJ_RHOSK | DNA ligase |
| [B] Roseobacter denitrificans (strain ATCC 33942 / OCh 114) | ROSDO02409 | DNLJ_ROSDO | DNA ligase, NAD-dependent |
| [B] Silicibacter pomeroyi | SILPO01643 | DNLJ_SILPO | identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Silicibacter sp. (strain TM1040) | SILST01396 | DNLJ_SILST | DNA ligase, NAD-dependent KEGG: sil:SPO1680 DNA ligase, NAD-dependent, ev=0.0, 75% identity TIGRFAM: DNA ligase, NAD-dependent: (4.1e-283) PFAM: BRCT: (1.9e-17) NAD-dependent DNA ligase: (2.1e-140) zinc-finger, NAD-dependent DNA ligase C4-type: (2.5e-10) NAD-dependent DNA ligase, OB-fold: (1.9e-38) |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ00741 | DNLJ_ACICJ | DNA ligase, NAD-dependent |
| [B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) | GLUDA03120 | DNLJ_GLUDA | Putative DNA ligase |
| [B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) | GRABC00419 | DNLJ_GRABC | NAD-dependent DNA ligase |
| [B] Rhodospirillum centenum (strain ATCC 51521 / SW) | RHOCS00580 | DNLJ_RHOCS | DNA ligase, NAD-dependent |
| [B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) | RHORT00933 | DNLJ_RHORT | DNA ligase (NAD+) |
| [B] Neorickettsia sennetsu (strain Miyayama) | NEOSM00480 | DNLJ_NEOSM | DNA ligase, NAD-dependent identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Rickettsia akari (strain Hartford) | RICAH01013 | DNLJ_RICAH | DNA ligase |
| [B] Rickettsia bellii (strain OSU 85-389) | RICB801241 | DNLJ_RICB8 | DNA ligase |
| [B] Rickettsia bellii (strain RML369-C) | RICBR00191 | DNLJ_RICBR | DNA ligase, NAD-dependent |
| [B] Rickettsia canadensis (strain McKiel) | RICCK00913 | DNLJ_RICCK | DNA ligase |
| [B] Rickettsia felis | RICFE00184 | Q4UN15 | DNA ligase, NAD-dependent |
| [B] Rickettsia massiliae (strain Mtu5) | RICM500781 | DNLJ_RICM5 | DNA ligase |
| [B] Rickettsia prowazekii | RICPR00678 | DNLJ_RICPR | DNA LIGASE (lig) |
| [B] Rickettsia rickettsii (strain Iowa) | RICRO01119 | DNLJ_RICRO | NAD-dependent DNA ligase |
| [B] Rickettsia rickettsii (strain Sheila Smith) | RICRS01081 | DNLJ_RICRS | DNA ligase |
| [B] Rickettsia typhi | RICTY00675 | DNLJ_RICTY | DNA ligase (NAD+) |
| [B] Erythrobacter litoralis (strain HTCC2594) | ERYLH01437 | DNLJ_ERYLH | DNA ligase COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) |
| [B] Novosphingobium aromaticivorans (strain DSM 12444) | NOVAD01721 | DNLJ_NOVAD | DNA ligase |
| [B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) | SPHWW04669 | DNLJ_SPHWW | DNA ligase, NAD-dependent |
| [B] Sphingopyxis alaskensis | SPHAL00542 | DNLJ_SPHAL | DNA ligase, NAD-dependent |
| [B] Bordetella avium (strain 197N) | BORA101057 | DNLJ_BORA1 | DNA ligase |
| [B] Bordetella bronchiseptica | BORBR03763 | DNLJ_BORBR | ortholog of Bordetella pertussis (BX470248) BP3560 DNA ligase |
| [B] Bordetella parapertussis | BORPA03305 | DNLJ_BORPA | ortholog of Bordetella pertussis (BX470248) BP3560 DNA ligase |
| [B] Bordetella pertussis | BORPE03252 | DNLJ_BORPE | Similar to Escherichia coli DNA ligase LigA SW:DNLJ_ECOLI (P15042) (671 aa) fasta scores: E(): 3e-82, 54.4% id in 693 aa, and to Alteromonas haloplanktis DNA ligase TR:Q9RBF2 (EMBL:AF126866) (672 aa) fasta scores: E(): 2.1e-81, 53.92% id in 688 aa DNA ligase |
| [B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD01657 | DNLJ_BORPD | DNA ligase |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA401900 | DNLJ_BURA4 | DNA ligase, NAD-dependent |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA05975 | ABF80918.1 | DNA ligase, NAD-dependent precursor |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH02011 | DNLJ_BURCH | DNA ligase, NAD-dependent KEGG: bcn:Bcen_6053 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold SMART: Helix-hairpin-helix DNA-binding, class 1 |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC02018 | DNLJ_BURCC | DNA ligase, NAD-dependent |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM02046 | DNLJ_BURCM | DNA ligase, NAD-dependent KEGG: bur:Bcep18194_A5334 DNA ligase (NAD+) TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold SMART: Helix-hairpin-helix DNA-binding, class 1 |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ01997 | DNLJ_BURCJ | DNA ligase |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM102205 | DNLJ_BURM1 | DNA ligase, NAD-dependent |
| [B] Burkholderia sp. (strain 383) | BURS302141 | DNLJ_BURS3 | DNA ligase (NAD+) |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG01859 | DNLJ_BURVG | DNA ligase, NAD-dependent |
| [B] Burkholderia mallei | BURMA01265 | DNLJ_BURMA | DNA ligase, NAD-dependent |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM903053 | DNLJ_BURM9 | DNA ligase, NAD-dependent |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM701249 | DNLJ_BURM7 | DNA ligase, NAD-dependent |
| [B] Burkholderia mallei (strain SAVP1) | BURMS01937 | DNLJ_BURMS | DNA ligase, NAD-dependent |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP801327 | DNLJ_BURP8 | DNA ligase, NAD-dependent |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP02383 | DNLJ_BURPP | DNA ligase, NAD-dependent |
| [B] Burkholderia pseudomallei | BURPS02170 | DNLJ_BURPS | Similar to Escherichia coli DNA ligase LigA or Lig or DnaI or PdeC or Lop or b2411 SWALL:DNLJ_ECOLI (SWALL:P15042) (671 aa) fasta scores: E(): 4.8e-141, 57.84% id in 669 aa, and to Yersinia pestis DNA ligase LigA or ypo2989 SWALL:Q8ZCJ6 (EMBL:AJ414154) (670 aa) fasta scores: E(): 6e-139, 57.33% id in 668 aa. Note: This CDS is longer in its N-terminal region than most of its database matches DNA ligase |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP002462 | DNLJ_BURP0 | DNA ligase, NAD-dependent |
| [B] Burkholderia pseudomallei (strain 1710b) | BURP102540 | DNLJ_BURP1 | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Burkholderia pseudomallei (strain 668) | BURP602416 | DNLJ_BURP6 | DNA ligase |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA01954 | DNLJ_BURTA | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL02663 | DNLJ_BURXL | NAD-dependent DNA ligase |
| [B] Cupriavidus taiwanensis (strain R1 / LMG 19424) | CUPTR01647 | DNLJ_CUPTR | DNA ligase |
| [B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | RALEH02004 | DNLJ_RALEH | NAD-dependent DNA ligase |
| [B] Ralstonia eutropha (strain JMP134) | RALEJ01861 | DNLJ_RALEJ | NAD-dependent DNA ligase |
| [B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) | RALME01411 | DNLJ_RALME | DNA ligase, NAD-dependent |
| [B] Polynucleobacter necessarius (strain STIR1) | POLNS00435 | DNLJ_POLNS | DNA ligase, NAD-dependent |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ01444 | DNLJ_POLSQ | DNA ligase, NAD-dependent |
| [B] Ralstonia pickettii (strain 12J) | RALPJ01238 | DNLJ_RALPJ | DNA ligase, NAD-dependent |
| [B] Ralstonia solanacearum | RALSO01394 | DNLJ_RALSO | Product confidence : putative Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD PUTATIVE DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) PROTEIN |
| [B] Acidovorax avenae subsp. citrulli (strain AAC00-1) | ACIAC02717 | DNLJ_ACIAC | DNA ligase, NAD-dependent KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Acidovorax sp. (strain JS42) | ACISJ01928 | DNLJ_ACISJ | DNA ligase, NAD-dependent KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Delftia acidovorans (strain DSM 14801 / SPH-1) | DELAS03511 | DNLJ_DELAS | DNA ligase, NAD-dependent |
| [B] Diaphorobacter sp. (strain TPSY) | DIAST01628 | DNLJ_DIAST | DNA ligase, NAD-dependent |
| [B] Polaromonas naphthalenivorans (strain CJ2) | POLNA01768 | DNLJ_POLNA | DNA ligase, NAD-dependent |
| [B] Polaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ02534 | DNLJ_POLSJ | DNA ligase, NAD-dependent |
| [B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) | RHOFD02147 | DNLJ_RHOFD | DNA ligase, NAD-dependent |
| [B] Verminephrobacter eiseniae (strain EF01-2) | VEREI04338 | DNLJ_VEREI | DNA ligase, NAD-dependent |
| [B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP02480 | DNLJ_LEPCP | DNA ligase, NAD-dependent |
| [B] Methylibium petroleiphilum (strain PM1) | METPP01773 | DNLJ_METPP | DNA ligase |
| [B] Herminiimonas arsenicoxydans | HERAR01255 | DNLJ_HERAR | DNA ligase |
| [B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) | JANMA02064 | DNLJ_JANMA | DNA ligase |
| [B] Thiobacillus denitrificans (strain ATCC 25259) | THIDA00623 | DNLJ_THIDA | NAD-dependent DNA ligase |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK01256 | DNLJ_METFK | DNA ligase, NAD-dependent |
| [B] Chromobacterium violaceum | CHRVO03895 | DNLJ_CHRVO | identified by sequence similarity; putative; ORF located using Blastx/COG0272 DNA ligase |
| [B] Laribacter hongkongensis (strain HLHK9) | LARHH02828 | DNLJ_LARHH | DnlJ |
| [B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | NEIG100214 | DNLJ_NEIG1 | Best Blastp Hit: pir||F81172 DNA ligase NMB0666 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225892|gb|AAF41084.1| (AE002421) DNA ligase [Neisseria meningitidis MC58] COG0272 NAD-dependent DNA ligase (contains BRCT putative DNA ligase |
| [B] Neisseria gonorrhoeae (strain NCCP11945) | NEIG200359 | DNLJ_NEIG2 | Putative DNA ligase |
| [B] Neisseria meningitidis serogroup A | NEIMA00767 | DNLJ_NEIMA | Putative DNA ligase |
| [B] Neisseria meningitidis serogroup B | NEIMB00624 | DNLJ_NEIMB | DNA ligase |
| [B] Neisseria meningitidis serogroup C (strain 053442) | NEIM000574 | DNLJ_NEIM0 | DNA ligase Code: L; COG: COG0272 |
| [B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) | NEIMF00561 | DNLJ_NEIMF | Putative DNA ligase |
| [B] Nitrosomonas europaea | NITEU01704 | DNLJ_NITEU | NAD-dependent DNA ligase |
| [B] Nitrosomonas eutropha (strain C71) | NITEC00889 | ABI59206.1 | DNA ligase, NAD-dependent KEGG: neu:NE1753 NAD-dependent DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold SMART: Helix-hairpin-helix DNA-binding, class 1 |
| [B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) | NITMU00626 | DNLJ_NITMU | DNA ligase, NAD-dependent |
| [B] Azoarcus sp. (strain BH72) | AZOSB01993 | DNLJ_AZOSB | DNA ligase (NAD+) DNA ligase (Polydeoxyribonucleotide synthase [NAD+]). This protein catalyzes the formation of phosphodiester linkages between 5-phosphoryl and 3-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. TIGRFAM: dnlj: DNA ligase NAD-dependent. High confidence in function and specificity |
| [B] Azoarcus sp. (strain EbN1) | AZOSE03541 | DNLJ_AZOSE | NAD-dependent DNA ligase |
| [B] Dechloromonas aromatica (strain RCB) | DECAR01703 | DNLJ_DECAR | NAD-dependent DNA ligase |
| [B] Desulfococcus oleovorans (strain DSM 6200 / Hxd3) | DESOH01704 | DNLJ_DESOH | DNA ligase, NAD-dependent |
| [B] Desulfovibrio desulfuricans (strain G20) | DESDG02045 | DNLJ_DESDG | DNA ligase, NAD-dependent |
| [B] Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) | DESVH01597 | DNLJ_DESVH | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) | GEOBB01316 | DNLJ_GEOBB | DNA ligase, NAD-dependent |
| [B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) | GEOLS02853 | DNLJ_GEOLS | DNA ligase, NAD-dependent |
| [B] Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) | GEOMG02638 | DNLJ_GEOMG | NAD-dependent DNA ligase C4-type |
| [B] Geobacter sulfurreducens | GEOSL00877 | DNLJ_GEOSL | DNA ligase |
| [B] Geobacter uraniumreducens (strain Rf4) | GEOUR01249 | DNLJ_GEOUR | DNA ligase, NAD-dependent |
| [B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) | PELCD02352 | DNLJ_PELCD | DNA ligase, NAD-dependent |
| [B] Pelobacter propionicus (strain DSM 2379) | PELPD02924 | DNLJ_PELPD | DNA ligase, NAD-dependent KEGG: nwi:Nwi_1062 NAD-dependent DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Anaeromyxobacter dehalogenans (strain 2CP-C) | ANADE00690 | DNLJ_ANADE | DNA ligase, NAD-dependent |
| [B] Anaeromyxobacter sp. (strain Fw109-5) | ANADF00728 | DNLJ_ANADF | DNA ligase, NAD-dependent |
| [B] Anaeromyxobacter sp. (strain K) | ANASK00724 | DNLJ_ANASK | DNA ligase, NAD-dependent |
| [B] Myxococcus xanthus (strain DK 1622) | MYXXD05410 | DNLJ_MYXXD | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Syntrophus aciditrophicus (strain SB) | SYNAS01538 | DNLJ_SYNAS | NAD-dependent DNA ligase |
| [B] Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) | SYNFM01408 | ABK17119.1 | DNA ligase, NAD-dependent KEGG: gsu:GSU0890 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Arcobacter butzleri (strain RM4018) | ARCB401039 | DNLJ_ARCB4 | DNA ligase |
| [B] Campylobacter concisus (strain 13826) | CAMC101287 | DNLJ_CAMC1 | DNA ligase, NAD-dependent |
| [B] Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) | CAMHC00955 | DNLJ_CAMHC | DNA ligase, NAD-dependent |
| [B] Campylobacter jejuni | CAMJE00551 | DNLJ_CAMJE | DNA ligase |
| [B] Campylobacter jejuni (strain RM1221) | CAMJR00670 | DNLJ_CAMJR | identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) | CAMJD00884 | DNLJ_CAMJD | DNA ligase, NAD-dependent |
| [B] Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) | CAMJJ00558 | DNLJ_CAMJJ | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) | CAMJ800542 | DNLJ_CAMJ8 | DNA ligase |
| [B] Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) | CAMLR00634 | DNLJ_CAMLR | DNA ligase |
| [B] Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) | SULDN01327 | DNLJ_SULDN | DNA ligase |
| [B] Wolinella succinogenes | WOLSU01618 | DNLJ_WOLSU | DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] |
| [B] Sulfurovum sp. (strain NBC37-1) | SULNB00460 | DNLJ_SULNB | DNA ligase, NAD-dependent |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) | ACIF200719 | DNLJ_ACIF2 | DNA ligase |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 53993) | ACIF500860 | DNLJ_ACIF5 | DNA ligase, NAD-dependent |
| [B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) | AERHH01187 | DNLJ_AERHH | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Aeromonas salmonicida (strain A449) | AERS401090 | DNLJ_AERS4 | NAD-dependent DNA ligase |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV01105 | DNLJ_MARAV | DNA ligase, NAD-dependent KEGG: hch:HCH_04729 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD201867 | DNLJ_SACD2 | DNA ligase (NAD+) |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP303319 | DNLJ_COLP3 | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Idiomarina loihiensis | IDILO01678 | DNLJ_IDILO | NAD-dependent DNA ligase |
| [B] Pseudoalteromonas atlantica (strain T6c / BAA-1087) | PSEA601760 | DNLJ_PSEA6 | DNA ligase, NAD-dependent |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT01043 | DNLJ_PSEHT | Evidence 1 : Function experimentally demonstrated in the studied organism; PubMedId : 10848966; Product type e : enzyme NAD-dependent DNA ligase |
| [B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM01507 | DNLJ_SHEAM | DNA ligase (NAD(+)) KEGG: son:SO2896 DNA ligase, NAD-dependent |
| [B] Shewanella baltica (strain OS185) | SHEB802622 | DNLJ_SHEB8 | DNA ligase, NAD-dependent |
| [B] Shewanella baltica (strain OS195) | SHEB902696 | DNLJ_SHEB9 | KEGG: shw:Sputw3181_1645 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase DNA ligase, NAD-dependent |
| [B] Shewanella baltica (strain OS223) | SHEB201641 | DNLJ_SHEB2 | DNA ligase |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO02472 | DNLJ_SHEDO | DNA ligase, NAD-dependent |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN02419 | DNLJ_SHEFN | DNA ligase, NAD-dependent |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH02553 | DNLJ_SHEHH | DNA ligase, NAD-dependent |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP02366 | DNLJ_SHELP | DNA ligase, NAD-dependent KEGG: shm:Shewmr7_1575 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: NAD-dependent DNA ligase-like |
| [B] Shewanella oneidensis | SHEON02709 | DNLJ_SHEON | DNA ligase |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA01655 | DNLJ_SHEPA | KEGG: slo:Shew_2377 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase DNA ligase, NAD-dependent |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW01865 | DNLJ_SHEPW | DNA ligase |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC02326 | DNLJ_SHEPC | DNA ligase, NAD-dependent |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH01733 | DNLJ_SHESH | KEGG: slo:Shew_2377 DNA ligase, NAD-dependent DNA ligase (NAD(+)) |
| [B] Shewanella sp. (strain ANA-3) | SHESA01551 | ABK47803.1 | DNA ligase, NAD-dependent KEGG: son:SO2896 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold SMART: Helix-hairpin-helix DNA-binding, class 1 |
| [B] Shewanella sp. (strain MR-4) | SHESM01501 | ABI38586.1 | DNA ligase, NAD-dependent |
| [B] Shewanella sp. (strain MR-7) | SHESR01561 | ABI42573.1 | DNA ligase, NAD-dependent |
| [B] Shewanella sp. (strain W3-18-1) | SHESW01606 | DNLJ_SHESW | DNA ligase, NAD-dependent KEGG: son:SO2896 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM02809 | DNLJ_SHEWM | DNA ligase, NAD-dependent |
| [B] Baumannia cicadellinicola (subsp. Homalodisca coagulata) | BAUCH00065 | DNLJ_BAUCH | DNA ligase, NAD-dependent identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Dichelobacter nodosus (strain VCS1703A) | DICNV00361 | DNLJ_DICNV | DNA ligase, NAD-dependent |
| [B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) | NITOC01589 | DNLJ_NITOC | DNA ligase (NAD+) |
| [B] Alkalilimnicola ehrlichei (strain MLHE-1) | ALHEH00675 | DNLJ_ALHEH | DNA ligase, NAD-dependent |
| [B] Halorhodospira halophila (strain DSM 244 / SL1) | HALHL01845 | DNLJ_HALHL | DNA ligase, NAD-dependent |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH01991 | DNLJ_THISH | DNA ligase |
| [B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK800365 | DNLJ_CITK8 | DNA ligase |
| [B] Enterobacter sakazakii (strain ATCC BAA-894) | ENTS800799 | DNLJ_ENTS8 | Putative uncharacterized protein |
| [B] Enterobacter sp. (strain 638) | ENT3802911 | DNLJ_ENT38 | DNA ligase, NAD-dependent |
| [B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99) | ERWT901102 | DNLJ_ERWT9 | DNA ligase |
| [B] Escherichia coli (strain 55989 / EAEC) | ECO5502612 | DNLJ_ECO55 | DNA ligase |
| [B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC01231 | DNLJ_ECOLC | DNA ligase, NAD-dependent |
| [B] Escherichia coli (strain DH10B) | ECODH02265 | DNLJ_ECODH | DNA ligase, NAD(+)-dependent |
| [B] Escherichia coli (strain K12) | ECOLI02336 | DNLJ_ECOLI | DNA ligase |
| [B] Escherichia coli (strain SE11) | ECOSE02685 | DNLJ_ECOSE | DNA ligase |
| [B] Escherichia coli (strain SMS-3-5 / SECEC) | ECOSM02466 | DNLJ_ECOSM | DNA ligase, NAD-dependent |
| [B] Escherichia coli (strain UTI89 / UPEC) | ECOUT02686 | DNLJ_ECOUT | DNA ligase |
| [B] Escherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2702550 | DNLJ_ECO27 | DNA ligase |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2402544 | DNLJ_ECO24 | DNA ligase, NAD-dependent |
| [B] Escherichia coli O157:H7 | ECO5703075 | NP_288973.1 | Residues 1 to 671 of 671 are 99.25 pct identical to residues 1 to 671 of 671 from Escherichia coli K-12 Strain MG1655: B2411 DNA ligase |
| [B] Escherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E03084 | DNLJ_ECO5E | DNA ligase, NAD-dependent |
| [B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU02665 | DNLJ_ECOLU | DNA ligase |
| [B] Escherichia coli O1:K1 / APEC | ECOK102317 | DNLJ_ECOK1 | NAD-dependent DNA ligase LigA |
| [B] Escherichia coli O45:K1 (strain S88 / ExPEC) | ECO4502474 | DNLJ_ECO45 | DNA ligase |
| [B] Escherichia coli O6 | ECOL602838 | DNLJ_ECOL6 | DNA ligase |
| [B] Escherichia coli O6:K15:H31 (strain 536) | ECOL502397 | DNLJ_ECOL5 | DNA ligase |
| [B] Escherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I02417 | DNLJ_ECO7I | DNA ligase |
| [B] Escherichia coli O81 (strain ED1a) | ECO8102703 | DNLJ_ECO81 | DNA ligase |
| [B] Escherichia coli O9:H4 (strain HS) | ECOHS02364 | DNLJ_ECOHS | DNA ligase, NAD-dependent |
| [B] Klebsiella pneumoniae (strain 342) | KLEP301354 | DNLJ_KLEP3 | DNA ligase, NAD-dependent |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP702692 | DNLJ_KLEP7 | DNA ligase |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT03548 | DNLJ_ERWCT | Similar to Escherichia coli DNA ligase LigA or Lig or DnaL or PdeC or Lop or b2411 SWALL:DNLJ_ECOLI (SWALL:P15042) (671 aa) fasta scores: E(): 6.6e-198, 76.7% id in 674 aa DNA ligase |
| [B] Photorhabdus luminescens (subsp. laumondii) | PHOLL01351 | DNLJ_PHOLL | DNA ligase (polydeoxyribonucleotide synthase [NAD+]) |
| [B] Proteus mirabilis (strain HI4320) | PROMH01803 | DNLJ_PROMH | DNA ligase |
| [B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR00441 | DNLJ_SALAR | Putative uncharacterized protein |
| [B] Salmonella agona (strain SL483) | SALA402389 | DNLJ_SALA4 | DNA ligase, NAD-dependent |
| [B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 | SALCH02398 | DNLJ_SALCH | IPR000445: Helix-hairpin-helix motif; IPR001357: BRCT; IPR001679: NAD-dependent DNA ligase DNA ligase |
| [B] Salmonella dublin (strain CT_02021853) | SALDC02533 | DNLJ_SALDC | DNA ligase, NAD-dependent |
| [B] Salmonella enteritidis PT4 (strain P125109) | SALEP02391 | DNLJ_SALEP | DNA ligase |
| [B] Salmonella gallinarum (strain 287/91 / NCTC 13346) | SALG202361 | DNLJ_SALG2 | DNA ligase |
| [B] Salmonella heidelberg (strain SL476) | SALHS02504 | DNLJ_SALHS | DNA ligase, NAD-dependent |
| [B] Salmonella newport (strain SL254) | SALNS02449 | DNLJ_SALNS | DNA ligase |
| [B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) | SALPB00516 | DNLJ_SALPB | Putative uncharacterized protein |
| [B] Salmonella paratyphi A (strain AKU_12601) | SALPK00426 | DNLJ_SALPK | DNA ligase |
| [B] Salmonella paratyphi-a | SALPA00408 | DNLJ_SALPA | similar to Salmonella typhi Ty2 DNA ligase DNA ligase |
| [B] Salmonella schwarzengrund (strain CVM19633) | SALSV02472 | DNLJ_SALSV | DNA ligase, NAD-dependent |
| [B] Salmonella typhi | SALTI02428 | DNLJ_SALTI | DNA ligase |
| [B] Salmonella typhimurium | SALTY02331 | DNLJ_SALTY | similar to Escherichia coli DNA ligase (AAC75464.1) DNA ligase |
| [B] Serratia proteamaculans (strain 568) | SERP503420 | DNLJ_SERP5 | DNA ligase, NAD-dependent |
| [B] Shigella boydii serotype 4 (strain Sb227) | SHIBS01973 | DNLJ_SHIBS | Code: L; COG: COG0272 DNA ligase |
| [B] Shigella dysenteriae serotype 1 (strain Sd197) | SHIDS02008 | DNLJ_SHIDS | Code: L; COG: COG0272 DNA ligase |
| [B] Shigella flexneri | SHIFL02199 | DNLJ_SHIFL | Residues 1 to 671 of 671 are 99 pct identical to residues 1 to 671 of a 671 aa protein from Escherichia coli K12 ref: NP_416906.1 DNA ligase |
| [B] Shigella flexneri serotype 5b (strain 8401) | SHIF802082 | DNLJ_SHIF8 | DNA ligase Code: L; COG: COG0272 |
| [B] Shigella sonnei (strain Ss046) | SHISS02061 | DNLJ_SHISS | Code: L; COG: COG0272 DNA ligase |
| [B] Sodalis glossinidius (strain morsitans) | SODGM01645 | DNLJ_SODGM | DNA ligase |
| [B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) | YERE801147 | DNLJ_YERE8 | DNA ligase |
| [B] Yersinia pestis | YERPE02751 | DNLJ_YERPE | DNA ligase |
| [B] Yersinia pestis (biovar Antiqua strain Antiqua) | YERPA02057 | DNLJ_YERPA | DNA ligase |
| [B] Yersinia pestis (biovar Antiqua strain Nepal516) | YERPN01333 | DNLJ_YERPN | DNA ligase |
| [B] Yersinia pestis (strain Pestoides F) | YERPP01980 | DNLJ_YERPP | DNA ligase |
| [B] Yersinia pestis bv. Antiqua (strain Angola) | YERPG02354 | DNLJ_YERPG | DNA ligase, NAD-dependent |
| [B] Yersinia pseudotuberculosis | YERPS02690 | DNLJ_YERPS | DNA ligase |
| [B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) | YERP301286 | DNLJ_YERP3 | DNA ligase, NAD-dependent |
| [B] Yersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB02748 | DNLJ_YERPB | DNA ligase, NAD-dependent |
| [B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY01403 | DNLJ_YERPY | DNA ligase, NAD-dependent |
| [B] Coxiella burnetii | COXBU00514 | NP_819574.1 | identified by match to PFAM protein family HMM PF03119 DNA ligase, NAD-dependent |
| [B] Coxiella burnetii (strain CbuG_Q212) | COXB201258 | DNLJ_COXB2 | DNA ligase |
| [B] Coxiella burnetii (strain Dugway 5J108-111) | COXBN01416 | DNLJ_COXBN | DNA ligase, NAD-dependent |
| [B] Coxiella burnetii (strain RSA 331 / Henzerling II) | COXBR00556 | DNLJ_COXBR | DNA ligase, NAD-dependent |
| [B] Legionella pneumophila (strain Corby) | LEGPC02250 | DNLJ_LEGPC | DNA ligase |
| [B] Legionella pneumophila (strain Lens) | LEGPL00985 | DNLJ_LEGPL | DNA ligase |
| [B] Legionella pneumophila (strain Paris) | LEGPA01016 | DNLJ_LEGPA | DNA ligase |
| [B] Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152) | LEGPH00920 | Q5ZWX6 | conserved gene DNA ligase |
| [B] Methylococcus capsulatus | METCA02288 | DNLJ_METCA | identified by similarity to SP:P15042; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) | ALCBS00947 | DNLJ_ALCBS | DNA ligase |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH04457 | DNLJ_HAHCH | DNA ligase, NAD-dependent TIGRFAMsMatches:TIGR00575 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD00699 | DNLJ_CHRSD | DNA ligase, NAD-dependent |
| [B] Marinomonas sp. (strain MWYL1) | MARMS03341 | DNLJ_MARMS | DNA ligase, NAD-dependent |
| [B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ01261 | DNLJ_ACTPJ | DNA ligase |
| [B] Actinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP201275 | DNLJ_ACTP2 | DNA ligase |
| [B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP701328 | DNLJ_ACTP7 | DNA ligase |
| [B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z) | ACTSZ02029 | DNLJ_ACTSZ | DNA ligase, NAD-dependent |
| [B] Haemophilus ducreyi | HAEDU00700 | DNLJ_HAEDU | polydeoxyribonucleotide synthase (NAD+) DNA ligase |
| [B] Haemophilus influenzae | HAEIN01082 | DNLJ_HAEIN | DNA ligase |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI801102 | AAX88107.1 | polydeoxyribonucleotide synthase; Similar to: HI1100, DNLJ_HAEIN DNA ligase |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE01147 | DNLJ_HAEIE | DNA ligase |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG01501 | DNLJ_HAEIG | NAD-dependent DNA ligase LigA |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS00010 | DNLJ_HAEPS | DNA ligase |
| [B] Haemophilus somnus (strain 129PT) | HAES100381 | DNLJ_HAES1 | DNA ligase |
| [B] Haemophilus somnus (strain 2336) | HAES200682 | DNLJ_HAES2 | DNA ligase, NAD-dependent |
| [B] Mannheimia succiniciproducens (strain MBEL55E) | MANSM01760 | DNLJ_MANSM | NAD-dependent DNA ligase (contains BRCT domain type II) Lig protein |
| [B] Pasteurella multocida | PASMU01716 | DNLJ_PASMU | DNA ligase |
| [B] Acinetobacter baumannii (strain AB0057) | ACIB500819 | DNLJ_ACIB5 | DNA ligase |
| [B] Acinetobacter baumannii (strain AB307-0294) | ACIB302757 | DNLJ_ACIB3 | DNA ligase |
| [B] Acinetobacter baumannii (strain ACICU) | ACIBC00755 | DNLJ_ACIBC | NAD-dependent DNA ligase |
| [B] Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) | ACIBT00739 | ABO11237.1 | DNA ligase |
| [B] Acinetobacter baumannii (strain AYE) | ACIBY02789 | CAM87830.1 | DNA ligase |
| [B] Acinetobacter baumannii (strain SDF) | ACIBS02314 | CAP01965.1 | DNA ligase |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200317 | DNLJ_PSYA2 | DNA ligase |
| [B] Psychrobacter cryohalolentis (strain K5) | PSYCK00351 | DNLJ_PSYCK | DNA ligase, NAD-dependent |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF00464 | DNLJ_PSYWF | DNA ligase, NAD-dependent |
| [B] Cellvibrio japonicus (strain Ueda107) | CELJU01835 | DNLJ_CELJU | DNA ligase, NAD-dependent |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA703728 | DNLJ_PSEA7 | DNA ligase, NAD-dependent |
| [B] Pseudomonas entomophila (strain L48) | PSEE401611 | DNLJ_PSEE4 | NAD-dependent DNA ligase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3018436; Product type e : enzyme |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF501860 | DNLJ_PSEF5 | identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP101569 | DNLJ_PSEP1 | DNA ligase, NAD-dependent |
| [B] Pseudomonas putida (strain GB-1) | PSEPG03801 | DNLJ_PSEPG | DNA ligase, NAD-dependent unknown EC_number=6.5.1.2 KEGG: pen:PSEEN1769 NAD-dependent DNA ligase TIGRFAM: DNA ligase, NAD-dependent PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase |
| [B] Pseudomonas putida (strain KT2440) | PSEPK04191 | DNLJ_PSEPK | similar to GB:X12597, GB:L13805, SP:P09429, PID:1435197, PID:32327, and PID:968888; identified by sequence similarity; putative DNA ligase, NAD-dependent |
| [B] Pseudomonas putida (strain W619) | PSEPW03574 | DNLJ_PSEPW | DNA ligase, NAD-dependent |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU501798 | ABP79531.1 | DNA ligase, NAD-dependent |
| [B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017) | FRAP201311 | DNLJ_FRAP2 | DNA ligase |
| [B] Francisella tularensis (subsp. tularensis) | FRATT01340 | DNLJ_FRATT | Similar to P43813 DNA ligase from Haemophilus influenzae (679 aa). FASTA: opt: 2154 Z-score: 2353.2 E(): 3.2e-123 Smith-Waterman score: 2154; 48.817 identity in 676 aa overlap DNA ligase |
| [B] Francisella tularensis subsp. holarctica (strain FTA) | FRATF00542 | DNLJ_FRATF | DNA ligase |
| [B] Francisella tularensis subsp. holarctica (strain LVS) | FRATH00627 | DNLJ_FRATH | DNA ligase |
| [B] Francisella tularensis subsp. holarctica (strain OSU18) | FRATO00538 | DNLJ_FRATO | DNA ligase |
| [B] Francisella tularensis subsp. mediasiatica (strain FSC147) | FRATM00504 | DNLJ_FRATM | DNA ligase, NAD-dependent |
| [B] Francisella tularensis subsp. novicida (strain U112) | FRATN01314 | DNLJ_FRATN | DNA ligase |
| [B] Francisella tularensis subsp. tularensis (strain WY96-3418) | FRATW00373 | DNLJ_FRATW | DNA ligase, NAD-dependent |
| [B] Mycobacteriophage FRAT1 | FRAT101321 | DNLJ_FRAT1 | DNA ligase Similar to P43813 DNA ligase from Haemophilus influenzae (679 aa). FASTA: opt: 2154 Z-score: 2353.2 E(): 3.2e-123 Smith-Waterman score: 2154; 48.817 identity in 676 aa overlap |
| [B] Thiomicrospira crunogena (strain XCL-2) | THICR01236 | DNLJ_THICR | DNA ligase, NAD-dependent |
| [B] Aliivibrio salmonicida (strain LFI1238) | ALISL02083 | DNLJ_ALISL | NAD-dependent DNA ligase |
| [B] Vibrio fischeri (strain MJ11) | VIBFM01946 | DNLJ_VIBFM | DNA ligase, NAD-dependent |
| [B] Photobacterium profundum | PHOPR00804 | DNLJ_PHOPR | putative NAD-dependent DNA ligase |
| [B] Vibrio cholerae | VIBCH00957 | DNLJ_VIBCH | similar to GB:M24278 SP:P15042 GB:M30255 PID:146613 PID:146615; identified by sequence similarity; putative DNA ligase |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC300467 | DNLJ_VIBC3 | DNA ligase |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM00905 | DNLJ_VIBCM | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF101886 | DNLJ_VIBF1 | NAD-dependent DNA ligase |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB01135 | DNLJ_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA00799 | DNLJ_VIBPA | similar to GB:AAF94133.1 (AE004178) percent identity 74 in 665 aa DNA ligase |
| [B] Vibrio splendidus (strain LGP32) | VIBSL02160 | DNLJ_VIBSL | DNA ligase |
| [B] Vibrio vulnificus | VIBVU00195 | DNLJ_VIBVU | contains BRCT domain type II; COG0272 NAD-dependent DNA ligase |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY00978 | DNLJ_VIBVY | DNA ligase |
| [B] Xanthomonas axonopodis (pv. citri) | XANAC01587 | DNLJ_XANAC | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA ligase |
| [B] Xanthomonas campestris pv. campestris | XANCP01531 | DNLJ_XANCP | DNA ligase |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC802575 | DNLJ_XANC8 | DNA ligase |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB02681 | DNLJ_XANCB | DNA ligase |
| [B] Xanthomonas campestris pv. vesicatoria (strain 85-10) | XANC501633 | DNLJ_XANC5 | DNA ligase |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM02103 | DNLJ_XANOM | DNA ligase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM03518 | DNLJ_MAGSM | transcriptional regulator, Fis family KEGG: rme:Rmet_1428 DNA ligase, NAD-dependent TIGRFAM: DNA ligase, NAD-dependent PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like |
| [B] Phytoplasma mali (strain AT) | PHYMT00241 | DNLJ_PHYMT | NAD-dependent DNA ligase |
| [B] Phytoplasma australiense | PHYAS00711 | DNLJ_PHYAS | NAD-dependent DNA ligase |
| [B] Aster yellows witches'-broom phytoplasma (strain AYWB) | AYWBP00314 | DNLJ_AYWBP | NAD-dependent DNA ligase |
| [B] Onion yellows phytoplasma | ONYPE00403 | DNLJ_ONYPE | PAM438 identified by sequence similarity; putative NAD-dependent DNA ligase |
| [B] Mesoplasma florum | MESFL00160 | DNLJ_MESFL | DNA ligase, polydeoxyribonucleotide synthase NAD+ |
| [B] Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) | MYCCT00671 | DNLJ_MYCCT | DNA ligase, NAD-dependent identified by similarity to SP:P49421; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 |
| [B] Mycoplasma hyopneumoniae (strain 7448) | MYCH700260 | DNLJ_MYCH7 | identified by sequence similarity; putative; ORF located using Blastx; COG0272 DNA ligase |
| [B] Mycoplasma mycoides subsp. mycoides SC | MYCMS00720 | DNLJ_MYCMS | DNA ligase |
| [B] Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) | FERNB00171 | DNLJ_FERNB | DNA ligase, NAD-dependent |
| [B] Petrotoga mobilis (strain DSM 10674 / SJ95) | PETMO00967 | DNLJ_PETMO | DNA ligase, NAD-dependent |
| [B] Thermosipho africanus (strain TCF52B) | THEAB01697 | DNLJ_THEAB | DNA ligase |
| [B] Thermosipho melanesiensis (strain BI429 / DSM 12029) | THEM401472 | DNLJ_THEM4 | DNA ligase, NAD-dependent |
| [B] Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) | THELT00702 | DNLJ_THELT | DNA ligase, NAD-dependent |
| [B] Thermotoga maritima | THEMA00100 | DNLJ_THEMA | DNA ligase |
| [B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) | THEP100813 | DNLJ_THEP1 | DNA ligase, NAD-dependent |
| [B] Thermotoga sp. (strain RQ2) | THESQ00837 | DNLJ_THESQ | DNA ligase, NAD-dependent |
| [B] Opitutus terrae (strain DSM 11246 / PB90-1) | OPITP00004 | DNLJ1_OPITP | DNA ligase, NAD-dependent |
| [B] Methylokorus infernorum (strain V4) | METI401695 | DNLJ_METI4 | NAD-dependent DNA ligase |
| [B] Elusimicrobium minutum (strain Pei191) | ELUMP01209 | DNLJ_ELUMP | DNA ligase, NAD-dependent |
| [B] Uncultured termite group 1 bacterium phylotype Rs-D17 | UNCTG00417 | DNLJ_UNCTG | DNA ligase |