List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 200449

2 production protein
This group has 24 members: 24 [B]acteria
Fingerprint: YFGPMGC

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV800818  UniProtKB/Swiss-Prot LUXS_BACV8  Autoinducer-2 production protein LuxS
[B] Porphyromonas gingivalisPORGI00424  UniProtKB/Swiss-Prot LUXS_PORGI  similar to SP:P23939, GB:X55285, and PID:1333709; identified by sequence similarity; putative autoinducer-2 production protein LuxS
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG301405  UniProtKB/Swiss-Prot LUXS_PORG3  Putative autoinducer-2 production protein LuxS
[B] Clostridium acetobutylicumCLOAB02895  UniProtKB/Swiss-Prot LUXS_CLOAB  Uncharacterized conserved protein fron YGAG family, predicted metal-dependent enzyme
[B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)CLOB801223  UniProtKB/Swiss-Prot LUXS_CLOB8  Quorum-sensing autoinducer 2 (AI-2), LuxS
[B] Clostridium botulinum (strain Alaska E43 / type E3)CLOBA02495  UniProtKB/Swiss-Prot LUXS_CLOBA  S-ribosylhomocysteinase LuxS
[B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)CLOK501503  UniProtKB/TrEMBL A5N8G9  S-ribosylhomocysteine lyase-related protein
[B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)CLOPH00881  UniProtKB/TrEMBL A9KLE6  Quorum-sensing autoinducer 2 (AI-2), LuxS
[B] Finegoldia magna (strain ATCC 29328)FINM200716  UniProtKB/Swiss-Prot LUXS_FINM2  Autoinducer-2 production protein
[B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081)LACDA00100  UniProtKB/Swiss-Prot LUXS_LACDA  S-ribosylhomocysteinase (Autoinducer-2 production protein LuxS) (AI-2 synthesis protein)
[B] Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365)LACDB00076  UniProtKB/Swiss-Prot LUXS1_LACDB  Autoinducer AI2 synthesis LuxS-like protein
[B] Lactobacillus fermentum (strain IFO 3956 / LMG 18251)LACF301577  UniProtKB/Swiss-Prot LUXS_LACF3  Autoinducer-2 production protein
[B] Lactobacillus plantarumLACPL00662  UniProtKB/Swiss-Prot LUXS_LACPL  autoinducer production protein
[B] Lactobacillus reuteri (strain DSM 20016)LACRD01515  UniProtKB/Swiss-Prot LUXS_LACRD  S-ribosylhomocysteine lyase
[B] Lactobacillus reuteri (strain JCM 1112)LACRJ01458  UniProtKB/Swiss-Prot LUXS_LACRJ  autoinducer-2 production protein LuxS
[B] Desulfotalea psychrophilaDESPS00529  UniProtKB/Swiss-Prot LUXS_DESPS  probable autoinducer-2 production protein (LuxS)
[B] Borrelia afzelii (strain PKo)BORAP00377  UniProtKB/Swiss-Prot LUXS_BORAP  Hypothetical protein
[B] Borrelia burgdorferiBORBU00377   NP_212511.1  similar to GB:L42023 SP:P44007 PID:1003866 PID:1222424 PID:1204742 percent identity: 33.79; identified by sequence similarity; putative conserved hypothetical protein
[B] Borrelia burgdorferi (strain ZS7)BORBZ00360  UniProtKB/Swiss-Prot LUXS_BORBZ  S-ribosylhomocysteine lyase
[B] Borrelia duttonii (strain Ly)BORDL00364  UniProtKB/TrEMBL B5RLT8  Autoinducer-2 production protein
[B] Borrelia gariniiBORGA00370  UniProtKB/Swiss-Prot LUXS_BORGA  S-ribosylhomocysteine lyase
[B] Borrelia hermsii (strain DAH)BORHD00361  UniProtKB/TrEMBL B2S081  Autoinducer-2 production protein LuxS
[B] Borrelia recurrentis (strain A1)BORRA00354  UniProtKB/TrEMBL B5RRI6  Autoinducer-2 production protein
[B] Borrelia turicatae (strain 91E135)BORT900363  UniProtKB/TrEMBL A1QZG6  Autoinducer-2 production protein LuxS