List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 85042

e PH
This group has 491 members: 9 [A]rchaea 482 [B]acteria
Fingerprint: MLPRATG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)DESK101320  UniProtKB/TrEMBL B8D6B9  Probable exosome complex exonuclease 1
[A] Hyperthermus butylicus (strain DSM 5456 / JCM 9403)HYPBU00550  UniProtKB/Swiss-Prot ECX1_HYPBU  Ribonuclease PH
[A] Sulfolobus acidocaldariusSULAC00570  UniProtKB/Swiss-Prot ECX1_SULAC  ribonuclease PH
[A] Thermofilum pendens (strain Hrk 5)THEPD00576  UniProtKB/TrEMBL A1RXQ6  Exosome complex exonuclease 1
[A] Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)METS300240  UniProtKB/TrEMBL A5UJR9  Ribonuclease PH, Rph
[A] Pyrococcus abyssiPYRAB00611  UniProtKB/Swiss-Prot ECX1_PYRAB  Probable exosome complex exonuclease 1
[A] Pyrococcus furiosusPYRFU01556  UniProtKB/Swiss-Prot ECX1_PYRFU  Probable exosome complex exonuclease 1
[A] Thermococcus kodakaraensisPYRKO01628  UniProtKB/Swiss-Prot ECX1_PYRKO  exosome subunit Rrp41p homolog, 3'-5' exoribonuclease
[A] Thermococcus onnurineus (strain NA1)THEON00031  UniProtKB/Swiss-Prot ECX1_THEON  3'-5' exoribonuclease
[B] Acidobacteria bacterium (strain Ellin345)ACIBL01612  UniProtKB/TrEMBL Q1IR82  ribonuclease PH
[B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC502673  UniProtKB/TrEMBL C1F3D1  tRNA nucleotidyltransferase
[B] Solibacter usitatus (strain Ellin6076)SOLUE07537  UniProtKB/Swiss-Prot RNPH_SOLUE  ribonuclease PH KEGG: aba:Acid345_1616 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Corynebacterium diphtheriaeCORDI01802  UniProtKB/Swiss-Prot RNPH_CORDI  Similar to Escherichia coli ribonuclease PH Rph SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 9.1e-48, 58.29% id in 235 aa, and to Mycobacterium leprae probable ribonuclease PH ML1174 SW:RNPH_MYCLE (P37939) (259 aa) fasta scores: E(): 4.4e-54, 64.13% id in 237 aa Putative ribonuclease PH
[B] Corynebacterium efficiensCOREF02346  UniProtKB/Swiss-Prot RNPH_COREF  similar to U00014-5|AAA50880.1| percent identity: 64 in 238 aa putative ribonuclease
[B] Corynebacterium glutamicumCORGL02970  UniProtKB/Swiss-Prot RNPH_CORGL  Ribonuclease PH
[B] Corynebacterium glutamicum (strain R)CORGB02457  UniProtKB/Swiss-Prot RNPH_CORGB  Hypothetical protein
[B] Corynebacterium jeikeium (strain K411)CORJK00470  UniProtKB/TrEMBL Q4JX02  ribonuclease PH
[B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)CORU701457  UniProtKB/TrEMBL B1VGW9  Ribonuclease PH
[B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA901465  UniProtKB/Swiss-Prot RNPH_MYCA9  Probable ribonuclease PH
[B] Mycobacterium avium (strain 104)MYCA101469  UniProtKB/Swiss-Prot RNPH_MYCA1  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Mycobacterium paratuberculosisMYCPA02396  UniProtKB/Swiss-Prot RNPH_MYCPA  RphA
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI02275  UniProtKB/Swiss-Prot RNPH_MYCGI  ribonuclease PH TIGRFAM: ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH
[B] Mycobacterium lepraeMYCLE01171  UniProtKB/Swiss-Prot RNPH_MYCLE  Identical to the previously sequenced Mycobacterium leprae probable ribonuclease PH (EC 2.7.7.56) SW:RNPH_MYCLE (P37939) (259 aa); Fasta score E(): 0, 99.6% identity in 259 aa overlap. Also highly similar to many other ribonucleases including: Mycobacterium tuberculosis SW:RNPH_MYCTU (Q10628) (259 aa); Fasta score E(): 0, 88.8% identity in 259 aa overlap and Escherichia coli SW:RNPH_ECOLI (P03842) (238 aa); Fasta score E(): 0, 55.7% identity in 237 aa overlap. Contains Pfam match to entry PF01138 RNase_PH, 3' exoribonuclease family. Contains PS01277 Ribonuclease PH signature. ribonuclease PH
[B] Mycobacterium leprae (strain Br4923)MYCLB01161  UniProtKB/Swiss-Prot RNPH_MYCLB  Ribonuclease PH
[B] Mycobacterium marinum (strain ATCC BAA-535 / M)MYCMM03947  UniProtKB/TrEMBL B2HQF7  Ribonuclease RphA
[B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS204626  UniProtKB/Swiss-Prot RNPH_MYCS2  Ribonuclease PH
[B] Mycobacterium sp. (strain JLS)MYCSJ03763  UniProtKB/Swiss-Prot RNPH_MYCSJ  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Mycobacterium sp. (strain KMS)MYCSK03825  UniProtKB/Swiss-Prot RNPH_MYCSK  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Mycobacterium sp. (strain MCS)MYCSS03805  UniProtKB/Swiss-Prot RNPH_MYCSS  Ribonuclease PH
[B] Mycobacterium bovisMYCBO01369  UniProtKB/Swiss-Prot RNPH_MYCBO  Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC 2.7.7.56), highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY. PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[B] Mycobacterium bovis (strain BCG / Paris 1173P2)MYCBP01375  UniProtKB/Swiss-Prot RNPH_MYCBP  Probable ribonuclease rphA
[B] Mycobacterium tuberculosisMYCTU02544  UniProtKB/Swiss-Prot RNPH_MYCTU  Ribonuclease PH
[B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA01359  UniProtKB/Swiss-Prot RNPH_MYCTA  Ribonuclease PH
[B] Mycobacterium tuberculosis (strain F11)MYCTF01327  UniProtKB/TrEMBL A5WM24  ribonuclease rphA (RNase ph) Mapped to H37Rv Rv1340
[B] Mycobacterium ulcerans (strain Agy99)MYCUA03162  UniProtKB/Swiss-Prot RNPH_MYCUA  ribonuclease RphA cytoplasmic protein RNase ph is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [catalytic activity: {tRNA}(n+1) + phosphate = {tRNA}(N) + a nucleoside diphosphate]
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP04137  UniProtKB/Swiss-Prot RNPH_MYCVP  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Nocardia farcinicaNOCFA01098  UniProtKB/Swiss-Prot RNPH_NOCFA  putative RNase PH
[B] Rhodococcus erythropolis (strain PR4 / NBRC 100887)RHOE403871  UniProtKB/Swiss-Prot RNPH_RHOE4  Ribonuclease PH
[B] Rhodococcus opacus (strain B4)RHOOB01141  UniProtKB/TrEMBL C1AVV8  Ribonuclease PH
[B] Rhodococcus sp. (strain RHA1)RHOSR01396  UniProtKB/TrEMBL Q0SGT5  TRNA nucleotidyltransferase
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101680  UniProtKB/TrEMBL A0LVJ6  ribonuclease PH KEGG: sco:SCO2904 putative ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Frankia sp. (strain CcI3)FRASC00847  UniProtKB/Swiss-Prot RNPH_FRASC  ribonuclease PH
[B] Frankia sp. (strain EAN1pec)FRASN05476  UniProtKB/Swiss-Prot RNPH_FRASN  Ribonuclease PH
[B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)KINRD03726  UniProtKB/TrEMBL A6WEI7  Ribonuclease PH
[B] Tropheryma whipplei (strain TW08/27)TROW800608   NP_789565.1  Similar to Escherichia coli ribonuclease PH Rph or b3643 SWALL:RNPH_ECOLI (SWALL:P03842) (238 aa) fasta scores: E(): 5.3e-42, 49.57% id in 236 aa, and to Bifidobacterium longum NCC2705 probable ribonuclease PH bl0286 SWALL:AAN24126 (EMBL:AE014647) (258 aa) fasta scores: E(): 3.3e-46, 54.39% id in 239 aa ribonuclease PH
[B] Tropheryma whipplei (strain Twist)TROWT00620   NP_787750.1  ribonuclease PH
[B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)CLAM301312  UniProtKB/TrEMBL A5CQI7  Ribonuclease PH
[B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)CLAMS02025  UniProtKB/TrEMBL B0RFB1  Ribonuclease PH
[B] Leifsonia xyli (subsp. xyli)LEIXX01065  UniProtKB/Swiss-Prot RNPH_LEIXX  identified by sequence similarity ribonuclease PH
[B] Arthrobacter aurescens (strain TC1)ARTAT02450  UniProtKB/TrEMBL A1R7S9  Ribonuclease PH
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA02273  UniProtKB/TrEMBL B8HAW4  Ribonuclease PH
[B] Arthrobacter sp. (strain FB24)ARTS202554  UniProtKB/TrEMBL A0JY40  ribonuclease PH KEGG: lxx:Lxx13580 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201)KOCRD00998  UniProtKB/TrEMBL B2GM08  Ribonuclease PH
[B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)RENSM01406  UniProtKB/TrEMBL A9WNP6  Ribonuclease PH
[B] Salinispora arenicola (strain CNS-205)SALAI00968  UniProtKB/Swiss-Prot RNPH_SALAI  Ribonuclease PH
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO01088  UniProtKB/Swiss-Prot RNPH_SALTO  RNAse PH
[B] Nocardioides sp. (strain BAA-499 / JS614)NOCSJ01280  UniProtKB/Swiss-Prot RNPH_NOCSJ  Ribonuclease PH
[B] Propionibacterium acnesPROAC01640   YP_056364.1  probable ribonuclease PH
[B] Saccharopolyspora erythraea (strain NRRL 23338)SACEN01173  UniProtKB/Swiss-Prot RNPH_SACEN  Ribonuclease PH
[B] Phytoplasma sp. (strain STRAWB1)STRAW05168  UniProtKB/Swiss-Prot RNPH_STRAW  Ribonuclease PH
[B] Streptomyces coelicolorSTRCO02882  UniProtKB/Swiss-Prot RNPH_STRCO  SCE19A.04c, rph, probable ribonuclease PH, len: 245 aa; highly similar to many e.g. SW:RNPH_ECOLI (EMBL:X00781), rph, Escherichia coli ribonuclease PH (238 aa), fasta scores; opt: 916 z-score: 1116.8 E(): 0, 60.8% identity in 240 aa overlap. Contains Pfam match to entry PF01138 RNase_PH, 3' exoribonuclease family and PS01277 Ribonuclease PH signature putative ribonuclease PH
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG04511  UniProtKB/Swiss-Prot RNPH_STRGG  Putative ribonuclease PH
[B] Thermobifida fusca (strain YX)THEFY02356  UniProtKB/TrEMBL Q47MC4  ribonuclease PH
[B] Bifidobacterium longumBIFLO00929  UniProtKB/Swiss-Prot RNPH_BIFLO  Ribonuclease PH
[B] Bifidobacterium longum (strain DJO10A)BIFLD01014  UniProtKB/TrEMBL B3DTK8  RNase PH
[B] Symbiobacterium thermophilumSYMTH00334  UniProtKB/Swiss-Prot RNPH_SYMTH  ribonuclease PH (tRNA nucleotidyltransferase)
[B] Aquifex aeolicusAQUAE00645  UniProtKB/Swiss-Prot RNPH_AQUAE  Ribonuclease PH
[B] Hydrogenobaculum sp. (strain Y04AAS1)HYDS000851  UniProtKB/Swiss-Prot RNPH_HYDS0  Ribonuclease PH
[B] Sulfurihydrogenibium sp. (strain YO3AOP1)SULSY00506  UniProtKB/Swiss-Prot RNPH_SULSY  Ribonuclease PH
[B] Chloroflexus aggregans (strain MD-66 / DSM 9485)CHLAD03534  UniProtKB/TrEMBL B8GAB7  Ribonuclease PH
[B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)CHLSY00251  UniProtKB/TrEMBL B9LHJ0  Ribonuclease PH
[B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)CHLAA00240  UniProtKB/TrEMBL A9WCA5  Ribonuclease PH
[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS03825  UniProtKB/TrEMBL A7NQX4  ribonuclease PH KEGG: rrs:RoseRS_2001 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Roseiflexus sp. (strain RS-1)ROSS101928  UniProtKB/TrEMBL A5UUT4  Ribonuclease PH
[B] Dehalococcoides ethenogenes (strain 195)DEHE101166  UniProtKB/Swiss-Prot RNPH_DEHE1  identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Dehalococcoides sp. (strain BAV1)DEHSB01072  UniProtKB/Swiss-Prot RNPH_DEHSB  Ribonuclease PH
[B] Dehalococcoides sp. (strain CBDB1)DEHSC01016  UniProtKB/Swiss-Prot RNPH_DEHSC  ribonuclease PH
[B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)THERP00422  UniProtKB/TrEMBL B9KY88  Ribonuclease PH
[B] Acaryochloris marina (strain MBIC 11017)ACAM102682  UniProtKB/Swiss-Prot RNPH_ACAM1  Ribonuclease PH
[B] Cyanothece (strain ATCC 51142)CYAA504454  UniProtKB/Swiss-Prot RNPH_CYAA5  Ribonuclease PH
[B] Cyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP404716  UniProtKB/Swiss-Prot RNPH_CYAP4  Ribonuclease PH
[B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP202044  UniProtKB/TrEMBL B1XI78  Ribonuclease PH
[B] Synechococcus sp. (strain CC9311)SYNS300312  UniProtKB/TrEMBL Q0IDC1  Ribonuclease PH
[B] Synechococcus sp. (strain CC9605)SYNSC00263  UniProtKB/Swiss-Prot RNPH_SYNSC  ribonuclease PH
[B] Synechococcus sp. (strain CC9902)SYNS902054  UniProtKB/TrEMBL Q3AUQ5  Ribonuclease PH
[B] Synechococcus sp. (strain JA-2-3B'a(2-13))SYNJB01671  UniProtKB/Swiss-Prot RNPH_SYNJB  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Synechococcus sp. (strain JA-3-3Ab)SYNJA02465  UniProtKB/Swiss-Prot RNPH_SYNJA  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Synechococcus sp. (strain PCC 6301)SYNP600474  UniProtKB/Swiss-Prot RNPH_SYNP6  hypothetical protein
[B] Synechococcus sp. (strain WH7803)SYNPW00320  UniProtKB/TrEMBL A5GII1  Ribonuclease PH
[B] Synechococcus sp. (strain WH8102)SYNPX00276  UniProtKB/Swiss-Prot RNPH_SYNPX  Ribonuclease PH
[B] Thermosynechococcus elongatus (strain BP-1)THEEB00575  UniProtKB/Swiss-Prot RNPH_THEEB  Ribonuclease PH
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT02613  UniProtKB/Swiss-Prot RNPH_ANAVT  Ribonuclease PH
[B] Anabaena sp. (strain PCC 7120)ANASP00067  UniProtKB/Swiss-Prot RNPH_ANASP  Ribonuclease PH
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP702225  UniProtKB/Swiss-Prot RNPH_NOSP7  Ribonuclease PH
[B] Trichodesmium erythraeum (strain IMS101)TRIEI01747  UniProtKB/TrEMBL Q113J5  Ribonuclease PH
[B] Prochlorococcus marinus (strain MIT 9303)PROM302418  UniProtKB/TrEMBL A2CCH6  Ribonuclease PH
[B] Prochlorococcus marinus (strain MIT 9313)PROMM01821  UniProtKB/Swiss-Prot RNPH_PROMM  ribonuclease PH
[B] Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923)DEIDV02439  UniProtKB/TrEMBL C1CZJ0  Putative tRNA nucleotidyltransferase
[B] Deinococcus geothermalis (strain DSM 11300)DEIGD02059  UniProtKB/TrEMBL Q1IWK4  ribonuclease PH KEGG: dra:DR1585 ribonuclease PH, ev=1e-107, 80% identity TIGRFAM: ribonuclease PH: (8.2e-53) PFAM: 3' exoribonuclease: (6.4e-27)
[B] Deinococcus radioduransDEIRA01544  UniProtKB/Swiss-Prot RNPH_DEIRA  Ribonuclease PH
[B] Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)DICT601165  UniProtKB/Swiss-Prot RNPH_DICT6  Ribonuclease PH
[B] Dictyoglomus turgidum (strain Z-1310 / DSM 6724)DICTD01270  UniProtKB/Swiss-Prot RNPH_DICTD  Ribonuclease PH
[B] Bacillus amyloliquefaciens (strain FZB42)BACA202453  UniProtKB/Swiss-Prot RNPH_BACA2  Rph
[B] Bacillus anthracisBACAN04348  UniProtKB/Swiss-Prot RNPH_BACAN  similar to GP:8102038, GB:M93284, SP:P54317, and PID:187232; identified by sequence similarity; putative ribonuclease PH
[B] Bacillus cereus (strain AH187)BACC704392  UniProtKB/Swiss-Prot RNPH_BACC7  Ribonuclease PH
[B] Bacillus cereus (strain ATCC 10987)BACC104542  UniProtKB/Swiss-Prot RNPH_BACC1  identified by match to protein family HMM PF01138; match to protein family HMM PF03725 ribonuclease PH
[B] Bacillus cereus (strain ATCC 14579 / DSM 31)BACCR04285  UniProtKB/Swiss-Prot RNPH_BACCR  Ribonuclease PH
[B] Bacillus cereus (strain G9842)BACC204494  UniProtKB/Swiss-Prot RNPH_BACC2  Ribonuclease PH
[B] Bacillus cereus (strain ZK)BACCZ04194  UniProtKB/Swiss-Prot RNPH_BACCZ  ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN03044  UniProtKB/Swiss-Prot RNPH_BACCN  Ribonuclease PH
[B] Bacillus clausii (strain KSM-K16)BACSK02640  UniProtKB/Swiss-Prot RNPH_BACSK  ribonuclease PH
[B] Bacillus haloduransBACHD03018  UniProtKB/Swiss-Prot RNPH_BACHD  ribonuclease PH
[B] Bacillus pumilus (strain SAFR-032)BACP202446  UniProtKB/Swiss-Prot RNPH_BACP2  tRNA nucleotidyltransferase
[B] Bacillus subtilisBACSU02835  UniProtKB/Swiss-Prot RNPH_BACSU  Ribonuclease PH
[B] Bacillus thuringiensis (strain Al Hakam)BACAH03862  UniProtKB/TrEMBL A0RJ97  ribonuclease PH
[B] Bacillus thuringiensis (subsp. konkukian)BACHK04148  UniProtKB/Swiss-Prot RNPH_BACHK  Structural feature(s) predicted by Psort:Uncleavable N-term signal seq: 4282253 - 4282221; Transmembrane: 4282240 - 4282224 ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[B] Bacillus weihenstephanensis (strain KBAB4)BACWK04215  UniProtKB/Swiss-Prot RNPH_BACWK  Ribonuclease PH
[B] Geobacillus kaustophilusGEOKA02638  UniProtKB/Swiss-Prot RNPH_GEOKA  ribonuclease PH
[B] Geobacillus thermodenitrificans (strain NG80-2)GEOTN02531  UniProtKB/Swiss-Prot RNPH_GEOTN  Ribonuclease PH
[B] Oceanobacillus iheyensisOCEIH02098  UniProtKB/Swiss-Prot RNPH_OCEIH  CDS_ID OB2106; tRNA nucleotidyltransferase ribonuclease PH
[B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS202107  UniProtKB/Swiss-Prot RNPH_EXIS2  Ribonuclease PH
[B] Listeria innocuaLISIN01199  UniProtKB/Swiss-Prot RNPH_LISIN  similar to ribonuclease PH
[B] Listeria monocytogenesLISMO01234  UniProtKB/Swiss-Prot RNPH_LISMO  similar to ribonuclease PH
[B] Listeria monocytogenes (serotype 4b / strain F2365)LISMF01232  UniProtKB/Swiss-Prot RNPH_LISMF  identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Listeria monocytogenes serotype 4a (strain HCC23)LISMH01390  UniProtKB/Swiss-Prot RNPH_LISMH  Ribonuclease PH
[B] Listeria monocytogenes serotype 4b (strain Clip81459)LISMC01219  UniProtKB/Swiss-Prot RNPH_LISMC  Putative ribonuclease PH
[B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)LISW601193  UniProtKB/Swiss-Prot RNPH_LISW6  Rph protein
[B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN01787  UniProtKB/Swiss-Prot RNPH_BREBN  Ribonuclease PH
[B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320)ANATD00777  UniProtKB/Swiss-Prot RNPH_ANATD  Ribonuclease PH
[B] Alkaliphilus metalliredigens (strain QYMF)ALKMQ00873  UniProtKB/TrEMBL A6TLV8  Ribonuclease PH
[B] Alkaliphilus oremlandii (strain OhILAs)ALKOO00546  UniProtKB/TrEMBL A8MLK5  Ribonuclease PH
[B] Clostridium botulinum (strain Alaska E43 / type E3)CLOBA00370  UniProtKB/Swiss-Prot RNPH_CLOBA  Ribonuclease PH
[B] Clostridium botulinum (strain Eklund 17B / type B)CLOBB00386  UniProtKB/Swiss-Prot RNPH_CLOBB  Ribonuclease PH
[B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)CLOCE01293  UniProtKB/Swiss-Prot RNPH_CLOCE  ribonuclease PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: cth:Cthe_0188 ribonuclease PH
[B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)CLOK503301  UniProtKB/Swiss-Prot RNPH_CLOK5  RpH
[B] Clostridium perfringensCLOPE02254  UniProtKB/Swiss-Prot RNPH_CLOPE  Ribonuclease PH
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP102449  UniProtKB/Swiss-Prot RNPH_CLOP1  ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Clostridium perfringens (strain SM101)CLOPS02154  UniProtKB/Swiss-Prot RNPH_CLOPS  ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH00183  UniProtKB/TrEMBL A3DBV0  Ribonuclease PH
[B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)HELMI00288  UniProtKB/TrEMBL B0TFI3  Ribonuclease ph
[B] Desulforudis audaxviator (strain MP104C)DESAP01425  UniProtKB/Swiss-Prot RNPH_DESAP  Ribonuclease PH
[B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)CARHZ00311  UniProtKB/Swiss-Prot RNPH_CARHZ  identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Desulfitobacterium hafniense (strain Y51)DESHY03187  UniProtKB/TrEMBL Q24SI1  hypothetical protein similarity to COG0689 RNase PH(Evalue: 1E-82)
[B] Desulfotomaculum reducens (strain MI-1)DESRM02580  UniProtKB/Swiss-Prot RNPH_DESRM  Ribonuclease PH
[B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)PELTS00782  UniProtKB/TrEMBL A5D466  RNase PH
[B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)CALS800901  UniProtKB/Swiss-Prot RNPH_CALS8  Ribonuclease PH
[B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen)SYNWW00420  UniProtKB/Swiss-Prot RNPH_SYNWW  TRNA nucleotidyltransferase
[B] Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)HALOH01508  UniProtKB/TrEMBL B8CYB9  Ribonuclease PH
[B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)NATTJ01878  UniProtKB/TrEMBL B2A6I8  RNAse PH
[B] Moorella thermoacetica (strain ATCC 39073)MOOTA00502  UniProtKB/Swiss-Prot RNPH_MOOTA  ribonuclease PH
[B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)THEP301602  UniProtKB/Swiss-Prot RNPH_THEP3  Ribonuclease PH
[B] Thermoanaerobacter sp. (strain X514)THEPX00521  UniProtKB/Swiss-Prot RNPH_THEPX  Ribonuclease PH
[B] Thermoanaerobacter tengcongensisTHETN00557  UniProtKB/Swiss-Prot RNPH_THETN  Best Blastp hit = gi|13591380|gb|AAK29744.1| (AY028475) ribonuclease PH-like protein [Mannheimia haemolytica], score 295, E-value 5.00E-79 RNase PH
[B] Rhodopirellula balticaRHOBA03169  UniProtKB/Swiss-Prot RNPH_RHOBA  PMID: 1624460 best DB hits: BLAST: swissprot:P28619; RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA; E=2e-60 pir:A44914; tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus; E=4e-60 pir:D82350; ribonuclease PH VC0210 [imported] - Vibrio cholerae; E=7e-60 COG: BS_rph; COG0689 RNase PH; E=2e-61 PA4740; COG1185 Polyribonucleotide nucleotidyltransferase; E=0.001 PFAM: PF01138; 3' exoribonuclease family; E=4.3e-59 ribonuclease PH
[B] Caulobacter crescentusCAUCR00151  UniProtKB/Swiss-Prot RNPH_CAUCR  Ribonuclease PH
[B] Caulobacter sp. (strain K31)CAUSK00166  UniProtKB/Swiss-Prot RNPH_CAUSK  Ribonuclease PH
[B] Phenylobacterium zucineum (strain HLK1)PHEZH03456  UniProtKB/Swiss-Prot RNPH_PHEZH  Ribonuclease PH
[B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)BEII900766  UniProtKB/Swiss-Prot RNPH_BEII9  Ribonuclease PH
[B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB02102  UniProtKB/Swiss-Prot RNPH_METSB  Ribonuclease PH
[B] Bradyrhizobium japonicumBRAJA00672  UniProtKB/Swiss-Prot RNPH_BRAJA  Ribonuclease PH
[B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)BRASB00176  UniProtKB/Swiss-Prot RNPH_BRASB  RNase PH
[B] Bradyrhizobium sp. (strain ORS278)BRASO00166  UniProtKB/Swiss-Prot RNPH_BRASO  RNase PH
[B] Nitrobacter hamburgensis (strain X14 / DSM 10229)NITHX00148  UniProtKB/Swiss-Prot RNPH_NITHX  ribonuclease PH
[B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN00189  UniProtKB/Swiss-Prot RNPH_NITWN  ribonuclease PH
[B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO00407  UniProtKB/Swiss-Prot RNPH_OLICO  Ribonuclease PH
[B] Rhodopseudomonas palustrisRHOPA00329  UniProtKB/Swiss-Prot RNPH_RHOPA  observed by proteomics Citation: Proteomics from VerBerkmoes et al. (2003) unpublished ribonuclease PH
[B] Rhodopseudomonas palustris (strain BisA53)RHOP500350  UniProtKB/TrEMBL Q07US2  ribonuclease PH KEGG: rpb:RPB_0425 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Rhodopseudomonas palustris (strain BisB18)RHOPB00321  UniProtKB/Swiss-Prot RNPH_RHOPB  ribonuclease PH
[B] Rhodopseudomonas palustris (strain BisB5)RHOPS00390  UniProtKB/Swiss-Prot RNPH_RHOPS  ribonuclease PH
[B] Rhodopseudomonas palustris (strain HaA2)RHOP200424  UniProtKB/Swiss-Prot RNPH_RHOP2  ribonuclease PH
[B] Rhodopseudomonas palustris (strain TIE-1)RHOPT00330  UniProtKB/Swiss-Prot RNPH_RHOPT  Ribonuclease PH
[B] Brucella abortusBRUAB00157  UniProtKB/Swiss-Prot RNPH_BRUAB  similar to BR0173, ribonuclease PH Rph, ribonuclease PH
[B] Brucella abortus (strain 2308)BRUA200170  UniProtKB/Swiss-Prot RNPH_BRUA2  3' exoribonuclease:Ribonuclease PH
[B] Brucella abortus (strain S19)BRUA100154  UniProtKB/Swiss-Prot RNPH_BRUA1  Ribonuclease PH
[B] Brucella canis (strain ATCC 23365 / NCTC 10854)BRUC200169  UniProtKB/Swiss-Prot RNPH_BRUC2  Ribonuclease PH
[B] Brucella melitensisBRUME01763  UniProtKB/Swiss-Prot RNPH_BRUME  Ribonuclease PH
[B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)BRUO200152  UniProtKB/Swiss-Prot RNPH_BRUO2  Ribonuclease PH
[B] Brucella suisBRUSU00168  UniProtKB/Swiss-Prot RNPH_BRUSU  similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH
[B] Brucella suis (strain ATCC 23445 / NCTC 10510)BRUSI00162  UniProtKB/Swiss-Prot RNPH_BRUSI  ribonuclease PH GO_function: tRNA-specific ribonuclease activity [GO ID 0004549]; GO_process: tRNA processing [GO ID 0008033]
[B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA400181  UniProtKB/Swiss-Prot RNPH_OCHA4  Ribonuclease PH
[B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688)METC400397  UniProtKB/Swiss-Prot RNPH_METC4  ribonuclease PH KEGG: mex:Mext_0401 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Methylobacterium extorquens (strain PA1)METEP00390  UniProtKB/Swiss-Prot RNPH_METEP  Ribonuclease PH
[B] Methylobacterium nodulans (strain ORS2060 / LMG 21967)METNO04468  UniProtKB/Swiss-Prot RNPH_METNO  Ribonuclease PH
[B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)METPB00442  UniProtKB/Swiss-Prot RNPH_METPB  Ribonuclease PH
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ02885  UniProtKB/Swiss-Prot RNPH_METRJ  Ribonuclease PH
[B] Methylobacterium sp. (strain 4-46)METS403977  UniProtKB/Swiss-Prot RNPH_METS4  Ribonuclease PH
[B] Mesorhizobium sp. (strain BNC1)MESSB03976  UniProtKB/Swiss-Prot RNPH_MESSB  ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease KEGG: bmb:BruAb1_0169 Rph, ribonuclease PH
[B] Rhizobium lotiRHILO03548  UniProtKB/Swiss-Prot RNPH_RHILO  ribonuclease PH
[B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL103498  UniProtKB/Swiss-Prot RNPH_PARL1  Ribonuclease PH
[B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK00458  UniProtKB/Swiss-Prot RNPH_AGRRK  Ribonuclease PH
[B] Agrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT500314  UniProtKB/Swiss-Prot RNPH_AGRT5  Ribonuclease PH
[B] Rhizobium etli (strain CFN 42 / ATCC 51251)RHIEC00348  UniProtKB/Swiss-Prot RNPH_RHIEC  ribonuclease PH protein similar to rph (SMc01144) [Sinorhizobium meliloti] and rph (Atu0327) [Agrobacterium tumefaciens str. C58] Similar to entrez-protein:Q92SK2 Putative location:bacterial cytoplasm Psort-Score: 0.4450; go_function: transferase activity [goid 0016740]; go_function: nucleotidyltransferase activity [goid 0016779]; go_function: RNA binding [goid 0003723]; go_function: 3`-5` exoribonuclease activity [goid 0000175]; go_function: tRNA binding [goid 0000049]; go_function: tRNA-specific ribonuclease activity [goid 0004549]; go_function: tRNA nucleotidyltransferase activity [goid 0009022]; go_process: RNA processing [goid 0006396]; go_process: tRNA processing [goid 0008033]
[B] Rhizobium etli (strain CIAT 652)RHIE600393  UniProtKB/Swiss-Prot RNPH_RHIE6  Ribonuclease PH protein
[B] Rhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW00006  UniProtKB/Swiss-Prot RNPH_RHILW  Ribonuclease PH
[B] Rhizobium leguminosarum bv. viciae (strain 3841)RHIL300382  UniProtKB/Swiss-Prot RNPH_RHIL3  putative ribonuclease similarity:fasta; with=UniProt:RNPH_CAUCR (EMBL:AE005689); Caulobacter crescentus.; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 64.017; 239 aa overlap; query 1-239; subject 1-238 similarity:fasta; with=UniProt:RNPH_AGRT5 (EMBL:AE007971); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 87.764; 237 aa overlap; query 1-237; subject 1-237
[B] Rhizobium melilotiRHIME00372  UniProtKB/Swiss-Prot RNPH_RHIME  Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE RIBONUCLEASE PH PROTEIN
[B] Sinorhizobium medicae (strain WSM419)SINMW00010  UniProtKB/Swiss-Prot RNPH_SINMW  Ribonuclease PH
[B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC504278  UniProtKB/Swiss-Prot RNPH_AZOC5  Ribonuclease PH
[B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)XANP202463  UniProtKB/Swiss-Prot RNPH_XANP2  Ribonuclease PH
[B] Hyphomonas neptunium (strain ATCC 15444)HYPNA03248  UniProtKB/TrEMBL Q0BX05  Ribonuclease PH
[B] Maricaulis maris (strain MCS10)MARMM02988  UniProtKB/Swiss-Prot RNPH_MARMM  Ribonuclease PH
[B] Dinoroseobacter shibae (strain DFL 12)DINSH03426  UniProtKB/Swiss-Prot RNPH_DINSH  Ribonuclease PH
[B] Paracoccus denitrificans (strain Pd 1222)PARDP00010  UniProtKB/TrEMBL A1AXY3  ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)RHOS402831  UniProtKB/TrEMBL Q3IYI2  Citation: Characterization of Escherichia coli RNase PH. J Biol Chem. 1992 Aug 25;267(24):17153-8. ribonuclease PH
[B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)RHOS502540  UniProtKB/Swiss-Prot RNPH_RHOS5  Ribonuclease PH
[B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)RHOS102845  UniProtKB/Swiss-Prot RNPH_RHOS1  ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085)RHOSK02597  UniProtKB/Swiss-Prot RNPH_RHOSK  Ribonuclease PH
[B] Roseobacter denitrificans (strain ATCC 33942 / OCh 114)ROSDO00399  UniProtKB/Swiss-Prot RNPH_ROSDO  ribonuclease PH
[B] Silicibacter pomeroyiSILPO00008  UniProtKB/Swiss-Prot RNPH_SILPO  identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Silicibacter sp. (strain TM1040)SILST02862  UniProtKB/Swiss-Prot RNPH_SILST  ribonuclease PH KEGG: sil:SPO0008 ribonuclease PH, ev=1e-119, 90% identity TIGRFAM: ribonuclease PH: (1.5e-157) PFAM: 3' exoribonuclease: (5.9e-52)
[B] Acidiphilium cryptum (strain JF-5)ACICJ01628  UniProtKB/TrEMBL A5FZ37  Ribonuclease PH
[B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)GLUDA01332  UniProtKB/TrEMBL A9HF53  Putative Ribonuclease PH
[B] Gluconobacter oxydansGLUOX01231  UniProtKB/TrEMBL Q5FRF3  Ribonuclease PH
[B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC00025  UniProtKB/TrEMBL Q0BW79  Ribonuclease PH
[B] Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)MAGMM04442   BAE53302.1  RNase PH
[B] Rhodospirillum centenum (strain ATCC 51521 / SW)RHOCS02875  UniProtKB/TrEMBL B6IVK4  Ribonuclease PH
[B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT03627  UniProtKB/Swiss-Prot RNPH_RHORT  Ribonuclease PH
[B] Orientia tsutsugamushi (strain Boryong)ORITB00211  UniProtKB/TrEMBL A5CCD0  TRNA nucleotidyltransferase
[B] Orientia tsutsugamushi (strain Ikeda)ORITI01099  UniProtKB/TrEMBL B3CTZ6  Ribonuclease PH
[B] Rickettsia akari (strain Hartford)RICAH00903  UniProtKB/Swiss-Prot RNPH_RICAH  Ribonuclease PH
[B] Rickettsia bellii (strain OSU 85-389)RICB800626  UniProtKB/Swiss-Prot RNPH_RICB8  Ribonuclease PH
[B] Rickettsia bellii (strain RML369-C)RICBR00591  UniProtKB/Swiss-Prot RNPH_RICBR  Ribonuclease PH
[B] Rickettsia canadensis (strain McKiel)RICCK00312  UniProtKB/Swiss-Prot RNPH_RICCK  Ribonuclease PH
[B] Rickettsia felisRICFE00381  UniProtKB/Swiss-Prot RNPH_RICFE  Ribonuclease PH
[B] Rickettsia massiliae (strain Mtu5)RICM500694  UniProtKB/TrEMBL A8F2B7  Ribonuclease PH
[B] Rickettsia prowazekiiRICPR00596  UniProtKB/Swiss-Prot RNPH_RICPR  RIBONUCLEASE PH (rph)
[B] Rickettsia rickettsii (strain Iowa)RICRO01001  UniProtKB/Swiss-Prot RNPH_RICRO  ribonuclease PH
[B] Rickettsia rickettsii (strain Sheila Smith)RICRS00962  UniProtKB/Swiss-Prot RNPH_RICRS  Ribonuclease PH
[B] Rickettsia conoriiRICCN00975  UniProtKB/Swiss-Prot RNPH_RICCN  Ribonuclease PH
[B] Erythrobacter litoralis (strain HTCC2594)ERYLH01196  UniProtKB/Swiss-Prot RNPH_ERYLH  RNase PH COG0689 RNase PH
[B] Novosphingobium aromaticivorans (strain DSM 12444)NOVAD02040  UniProtKB/TrEMBL Q2G6M3  Ribonuclease PH
[B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)SPHWW00562  UniProtKB/Swiss-Prot RNPH_SPHWW  Ribonuclease PH
[B] Sphingopyxis alaskensisSPHAL00249  UniProtKB/Swiss-Prot RNPH_SPHAL  ribonuclease PH
[B] Zymomonas mobilisZYMMO00014  UniProtKB/Swiss-Prot RNPH_ZYMMO  COG0689 RNase PH
[B] Bordetella avium (strain 197N)BORA101919  UniProtKB/TrEMBL Q2L0C2  ribonuclease PH
[B] Bordetella bronchisepticaBORBR02945  UniProtKB/Swiss-Prot RNPH_BORBR  ortholog of Bordetella pertussis (BX470248) BP1588 ribonuclease PH
[B] Bordetella parapertussisBORPA02955  UniProtKB/Swiss-Prot RNPH_BORPA  ortholog of Bordetella pertussis (BX470248) BP1588 ribonuclease PH
[B] Bordetella pertussisBORPE01449  UniProtKB/Swiss-Prot RNPH_BORPE  Similar to Escherichia coli ribonuclease PH Rph or B3643 SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 9.5e-53, 62.55% id in 235 aa, and to Xylella fastidiosa ribonuclease PH Xf1505 TR:Q9PD74 (EMBL:AE003980) (241 aa) fasta scores: E(): 4.1e-56, 66.66% id in 237 aa ribonuclease PH
[B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)BORPD02211  UniProtKB/TrEMBL A9ILQ1  Ribonuclease PH
[B] Burkholderia ambifaria (strain MC40-6)BURA400855  UniProtKB/Swiss-Prot RNPH_BURA4  Ribonuclease PH
[B] Burkholderia cenocepacia (strain AU 1054)BURCA00512  UniProtKB/Swiss-Prot RNPH_BURCA  Ribonuclease PH
[B] Burkholderia cenocepacia (strain HI2424)BURCH00989  UniProtKB/Swiss-Prot RNPH_BURCH  ribonuclease PH KEGG: bcn:Bcen_0518 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Burkholderia cenocepacia (strain MC0-3)BURCC00949  UniProtKB/Swiss-Prot RNPH_BURCC  Ribonuclease PH
[B] Burkholderia cepacia (strain ATCC 53795 / AMMD)BURCM00852  UniProtKB/Swiss-Prot RNPH_BURCM  ribonuclease PH KEGG: bpm:BURPS1710b_3051 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Burkholderia cepacia (strain J2315 / LMG 16656)BURCJ02901  UniProtKB/Swiss-Prot RNPH_BURCJ  ribonuclease PH
[B] Burkholderia multivorans (strain ATCC 17616 / 249)BURM101175  UniProtKB/Swiss-Prot RNPH_BURM1  Ribonuclease PH
[B] Burkholderia sp. (strain 383)BURS300918  UniProtKB/Swiss-Prot RNPH_BURS3  Ribonuclease PH
[B] Burkholderia vietnamiensis (strain G4 / LMG 22486)BURVG00883  UniProtKB/Swiss-Prot RNPH_BURVG  Ribonuclease PH
[B] Burkholderia malleiBURMA01719  UniProtKB/Swiss-Prot RNPH_BURMA  Ribonuclease PH
[B] Burkholderia mallei (strain NCTC 10229)BURM902488  UniProtKB/Swiss-Prot RNPH_BURM9  Ribonuclease PH
[B] Burkholderia mallei (strain NCTC 10247)BURM701843  UniProtKB/Swiss-Prot RNPH_BURM7  Ribonuclease PH
[B] Burkholderia mallei (strain SAVP1)BURMS00762  UniProtKB/TrEMBL A1V1Q3  Ribonuclease PH
[B] Burkholderia phymatum (strain DSM 17167 / STM815)BURP800659  UniProtKB/Swiss-Prot RNPH_BURP8  Ribonuclease PH
[B] Burkholderia phytofirmans (strain DSM 17436 / PsJN)BURPP03003  UniProtKB/Swiss-Prot RNPH_BURPP  Ribonuclease PH
[B] Burkholderia pseudomalleiBURPS02574  UniProtKB/Swiss-Prot RNPH_BURPS  Similar to Ralstonia solanacearum ribonuclease PH Rph or rsc2159 or rs01443 SWALL:RNPH_RALSO (SWALL:Q8XXF5) (238 aa) fasta scores: E(): 7.2e-67, 72.45% id in 236 aa, and to Salmonella typhimurium, and Salmonella typhi ribonuclease PH Rph or stm3734 or sty4060 SWALL:RNPH_SALTY (SWALL:P26155) (238 aa) fasta scores: E(): 2.7e-57, 66.24% id in 237 aa ribonuclease PH
[B] Burkholderia pseudomallei (strain 1106a)BURP002958  UniProtKB/Swiss-Prot RNPH_BURP0  Ribonuclease PH
[B] Burkholderia pseudomallei (strain 668)BURP602907  UniProtKB/Swiss-Prot RNPH_BURP6  Ribonuclease PH
[B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)BURTA01536  UniProtKB/Swiss-Prot RNPH_BURTA  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Burkholderia xenovorans (strain LB400)BURXL03415  UniProtKB/Swiss-Prot RNPH_BURXL  Ribonuclease PH
[B] Cupriavidus taiwanensis (strain R1 / LMG 19424)CUPTR00921  UniProtKB/Swiss-Prot RNPH_CUPTR  RNase PH
[B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)RALEH00942  UniProtKB/Swiss-Prot RNPH_RALEH  Ribonuclease PH
[B] Ralstonia eutropha (strain JMP134)RALEJ02449  UniProtKB/TrEMBL Q46YE4  Ribonuclease PH
[B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)RALME00843  UniProtKB/Swiss-Prot RNPH_RALME  ribonuclease PH
[B] Polynucleobacter sp. (strain QLW-P1DMWA-1)POLSQ01071  UniProtKB/TrEMBL A4SXT2  Ribonuclease PH
[B] Ralstonia pickettii (strain 12J)RALPJ02186  UniProtKB/Swiss-Prot RNPH_RALPJ  Ribonuclease PH
[B] Ralstonia solanacearumRALSO02144  UniProtKB/Swiss-Prot RNPH_RALSO  Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE RIBONUCLEASE PH (TRNA NUCLEOTIDYLTRANSFERASE) PROTEIN
[B] Acidovorax avenae subsp. citrulli (strain AAC00-1)ACIAC03413  UniProtKB/TrEMBL A1TT42  ribonuclease PH KEGG: pol:Bpro_1339 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Acidovorax sp. (strain JS42)ACISJ00888  UniProtKB/TrEMBL A1W4I8  ribonuclease PH KEGG: pol:Bpro_1339 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Diaphorobacter sp. (strain TPSY)DIAST00844  UniProtKB/TrEMBL B9MEK0  Ribonuclease PH
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ01315  UniProtKB/TrEMBL Q12DV3  ribonuclease PH
[B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)RHOFD01583  UniProtKB/TrEMBL Q21XZ4  ribonuclease PH
[B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)LEPCP00702  UniProtKB/TrEMBL B1Y0J9  Ribonuclease PH
[B] Methylibium petroleiphilum (strain PM1)METPP02657  UniProtKB/TrEMBL A2SJC0  TRNA nucleotidyltransferase
[B] Herminiimonas arsenicoxydansHERAR02014  UniProtKB/TrEMBL A4G6X6  RNase PH
[B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis)JANMA01331  UniProtKB/TrEMBL A6SXM5  Ribonuclease PH
[B] Thiobacillus denitrificans (strain ATCC 25259)THIDA00476  UniProtKB/TrEMBL Q3SLI0  ribonuclease PH
[B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875)METFK00043  UniProtKB/Swiss-Prot RNPH_METFK  ribonuclease PH
[B] Chromobacterium violaceumCHRVO03839  UniProtKB/Swiss-Prot RNPH_CHRVO  identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0689 tRNA nucleotidyltransferase
[B] Laribacter hongkongensis (strain HLHK9)LARHH02597  UniProtKB/Swiss-Prot RNPH_LARHH  RnpH
[B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)NEIG100866  UniProtKB/Swiss-Prot RNPH_NEIG1  Best Blastp Hit: pir||A81866 tRNA nucleotidyltransferase (EC 2.7.7.56) - Neisseria meningitidis (group A strain Z2491) >gi|7380343|emb|CAB84930.1| (AL162756) ribonuclease PH [Neisseria meningitidis] COG0689 RNase PH putative ribonuclease PH
[B] Neisseria gonorrhoeae (strain NCCP11945)NEIG200817  UniProtKB/Swiss-Prot RNPH_NEIG2  Putative ribonuclease PH
[B] Neisseria meningitidis serogroup ANEIMA01481  UniProtKB/Swiss-Prot RNPH_NEIMA  Ribonuclease PH
[B] Neisseria meningitidis serogroup BNEIMB01377  UniProtKB/Swiss-Prot RNPH_NEIMB  Ribonuclease PH
[B] Neisseria meningitidis serogroup C (strain 053442)NEIM001328  UniProtKB/Swiss-Prot RNPH_NEIM0  ribonuclease PH Code: J; COG: COG0689
[B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)NEIMF01285  UniProtKB/Swiss-Prot RNPH_NEIMF  Ribonuclease PH
[B] Nitrosomonas europaeaNITEU00264  UniProtKB/Swiss-Prot RNPH_NITEU  3' exoribonuclease family
[B] Nitrosomonas eutropha (strain C71)NITEC00296  UniProtKB/Swiss-Prot RNPH_NITEC  ribonuclease PH KEGG: neu:NE0276 3' exoribonuclease family TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)NITMU00062  UniProtKB/Swiss-Prot RNPH_NITMU  ribonuclease PH
[B] Azoarcus sp. (strain BH72)AZOSB03951  UniProtKB/Swiss-Prot RNPH_AZOSB  ribonuclease PH Ribonuclease PH (EC 2.7.7.56) (tRNA nucleotidyltransferase). Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates. High confidence in function and specificity
[B] Azoarcus sp. (strain EbN1)AZOSE01253  UniProtKB/Swiss-Prot RNPH_AZOSE  Ribonuclease PH
[B] Dechloromonas aromatica (strain RCB)DECAR03798  UniProtKB/Swiss-Prot RNPH_DECAR  Ribonuclease PH
[B] Bdellovibrio bacteriovorusBDEBA02470  UniProtKB/Swiss-Prot RNPH_BDEBA  InterPro: 3 exoribonuclease family hypothetical protein ribonuclease PH
[B] Desulfotalea psychrophilaDESPS01273  UniProtKB/Swiss-Prot RNPH_DESPS  probable ribonuclease PH
[B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)GEOBB01188  UniProtKB/TrEMBL B5EHL3  Ribonuclease PH
[B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)GEOLS01984  UniProtKB/Swiss-Prot RNPH_GEOLS  Ribonuclease PH
[B] Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)GEOMG01820  UniProtKB/Swiss-Prot RNPH_GEOMG  Ribonuclease PH
[B] Geobacter sulfurreducensGEOSL01768  UniProtKB/Swiss-Prot RNPH_GEOSL  Ribonuclease PH
[B] Geobacter uraniumreducens (strain Rf4)GEOUR02155  UniProtKB/Swiss-Prot RNPH_GEOUR  Ribonuclease PH
[B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)PELCD02165  UniProtKB/TrEMBL Q3A2Y6  Ribonuclease PH
[B] Pelobacter propionicus (strain DSM 2379)PELPD02191  UniProtKB/TrEMBL A1ARE8  ribonuclease PH KEGG: gme:Gmet_1876 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Anaeromyxobacter dehalogenans (strain 2CP-C)ANADE03348  UniProtKB/Swiss-Prot RNPH_ANADE  ribonuclease PH
[B] Anaeromyxobacter sp. (strain Fw109-5)ANADF03384  UniProtKB/Swiss-Prot RNPH_ANADF  Ribonuclease PH
[B] Anaeromyxobacter sp. (strain K)ANASK03403  UniProtKB/Swiss-Prot RNPH_ANASK  Ribonuclease PH
[B] Myxococcus xanthus (strain DK 1622)MYXXD01922  UniProtKB/Swiss-Prot RNPH_MYXXD  ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Sorangium cellulosum (strain So ce56)SORC507941  UniProtKB/TrEMBL A9FGR1  Ribonuclease PH
[B] Syntrophus aciditrophicus (strain SB)SYNAS01578  UniProtKB/Swiss-Prot RNPH_SYNAS  ribonuclease PH
[B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)ACIF202201  UniProtKB/TrEMBL B7J6B0  Ribonuclease PH
[B] Acidithiobacillus ferrooxidans (strain ATCC 53993)ACIF501881  UniProtKB/TrEMBL B5ELL0  Ribonuclease PH
[B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)AERHH04063  UniProtKB/TrEMBL A0KQU6  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Aeromonas salmonicida (strain A449)AERS400077  UniProtKB/TrEMBL A4SHC8  Ribonuclease PH
[B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype)ALTMD03992  UniProtKB/Swiss-Prot RNPH_ALTMD  RNase PH
[B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)MARAV00510  UniProtKB/Swiss-Prot RNPH_MARAV  ribonuclease PH KEGG: sde:Sde_3683 tRNA nucleotidyltransferase TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD203660  UniProtKB/Swiss-Prot RNPH_SACD2  tRNA nucleotidyltransferase
[B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681)COLP300095  UniProtKB/Swiss-Prot RNPH_COLP3  identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Idiomarina loihiensisIDILO02396  UniProtKB/Swiss-Prot RNPH_IDILO  RNase PH
[B] Pseudoalteromonas atlantica (strain T6c / BAA-1087)PSEA604238  UniProtKB/Swiss-Prot RNPH_PSEA6  Ribonuclease PH
[B] Pseudoalteromonas haloplanktis (strain TAC 125)PSEHT02712  UniProtKB/Swiss-Prot RNPH_PSEHT  Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1644789; Product type e : enzyme RNase PH (tRNA nucleotidyltransferase)
[B] Psychromonas ingrahamii (strain 37)PSYIN03276  UniProtKB/Swiss-Prot RNPH_PSYIN  ribonuclease PH KEGG: eca:ECA0140 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)SHEAM00318  UniProtKB/Swiss-Prot RNPH_SHEAM  tRNA nucleotidyltransferase KEGG: son:SO4256 ribonuclease PH
[B] Shewanella baltica (strain OS155 / ATCC BAA-1091)SHEB500359  UniProtKB/Swiss-Prot RNPH_SHEB5  Ribonuclease PH
[B] Shewanella baltica (strain OS185)SHEB800363  UniProtKB/Swiss-Prot RNPH_SHEB8  Ribonuclease PH
[B] Shewanella baltica (strain OS195)SHEB900380  UniProtKB/Swiss-Prot RNPH_SHEB9  KEGG: shw:Sputw3181_0332 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 ribonuclease PH
[B] Shewanella baltica (strain OS223)SHEB200380  UniProtKB/Swiss-Prot RNPH_SHEB2  Ribonuclease PH
[B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)SHEDO00315  UniProtKB/Swiss-Prot RNPH_SHEDO  Ribonuclease PH
[B] Shewanella frigidimarina (strain NCIMB 400)SHEFN03759  UniProtKB/Swiss-Prot RNPH_SHEFN  Ribonuclease PH
[B] Shewanella halifaxensis (strain HAW-EB4)SHEHH00420  UniProtKB/Swiss-Prot RNPH_SHEHH  Ribonuclease PH
[B] Shewanella loihica (strain BAA-1088 / PV-4)SHELP03476  UniProtKB/Swiss-Prot RNPH_SHELP  ribonuclease PH KEGG: shm:Shewmr7_0352 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Shewanella oneidensisSHEON03985  UniProtKB/Swiss-Prot RNPH_SHEON  Ribonuclease PH
[B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345)SHEPA03764  UniProtKB/Swiss-Prot RNPH_SHEPA  KEGG: slo:Shew_3488 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 ribonuclease PH
[B] Shewanella piezotolerans (strain WP3 / JCM 13877)SHEPW02080  UniProtKB/Swiss-Prot RNPH_SHEPW  Ribonuclease PH
[B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)SHEPC00436  UniProtKB/Swiss-Prot RNPH_SHEPC  Ribonuclease PH
[B] Shewanella sediminis (strain HAW-EB3)SHESH00378  UniProtKB/Swiss-Prot RNPH_SHESH  KEGG: slo:Shew_3488 ribonuclease PH tRNA nucleotidyltransferase
[B] Shewanella sp. (strain ANA-3)SHESA03731  UniProtKB/Swiss-Prot RNPH_SHESA  ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease KEGG: son:SO4256 ribonuclease PH
[B] Shewanella sp. (strain MR-4)SHESM03580  UniProtKB/Swiss-Prot RNPH_SHESM  Ribonuclease PH
[B] Shewanella sp. (strain MR-7)SHESR00349  UniProtKB/Swiss-Prot RNPH_SHESR  Ribonuclease PH
[B] Shewanella sp. (strain W3-18-1)SHESW00328  UniProtKB/Swiss-Prot RNPH_SHESW  ribonuclease PH KEGG: son:SO4256 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Shewanella woodyi (strain ATCC 51908 / MS32)SHEWM04502  UniProtKB/Swiss-Prot RNPH_SHEWM  Ribonuclease PH
[B] Dichelobacter nodosus (strain VCS1703A)DICNV00628  UniProtKB/Swiss-Prot RNPH_DICNV  Ribonuclease PH
[B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)NITOC02314  UniProtKB/Swiss-Prot RNPH_NITOC  Ribonuclease PH
[B] Alkalilimnicola ehrlichei (strain MLHE-1)ALHEH02424  UniProtKB/Swiss-Prot RNPH_ALHEH  Ribonuclease PH
[B] Halorhodospira halophila (strain DSM 244 / SL1)HALHL00952  UniProtKB/Swiss-Prot RNPH_HALHL  Ribonuclease PH
[B] Thioalkalivibrio sp. (strain HL-EbGR7)THISH02916  UniProtKB/Swiss-Prot RNPH_THISH  Ribonuclease PH
[B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)CITK804951  UniProtKB/Swiss-Prot RNPH_CITK8  Ribonuclease PH
[B] Enterobacter sakazakii (strain ATCC BAA-894)ENTS803939  UniProtKB/TrEMBL A7MQA8  Putative uncharacterized protein
[B] Enterobacter sp. (strain 638)ENT3800096  UniProtKB/Swiss-Prot RNPH_ENT38  Ribonuclease PH
[B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99)ERWT900061  UniProtKB/Swiss-Prot RNPH_ERWT9  Ribonuclease PH
[B] Escherichia coli (strain 55989 / EAEC)ECO5503950  UniProtKB/TrEMBL B7L767  Ribonuclease PH
[B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)ECOLC00063  UniProtKB/Swiss-Prot RNPH_ECOLC  Ribonuclease PH
[B] Escherichia coli (strain K12)ECOLI03522  UniProtKB/Swiss-Prot RNPH_ECOLI  Ribonuclease PH
[B] Escherichia coli (strain SE11)ECOSE03906  UniProtKB/Swiss-Prot RNPH_ECOSE  Ribonuclease PH
[B] Escherichia coli (strain SMS-3-5 / SECEC)ECOSM03802  UniProtKB/Swiss-Prot RNPH_ECOSM  Ribonuclease PH
[B] Escherichia coli (strain UTI89 / UPEC)ECOUT04092  UniProtKB/TrEMBL Q1R4U9  ribonuclease PH
[B] Escherichia coli O127:H6 (strain E2348/69 / EPEC)ECO2703828  UniProtKB/Swiss-Prot RNPH_ECO27  Ribonuclease PH
[B] Escherichia coli O139:H28 (strain E24377A / ETEC)ECO2403907  UniProtKB/Swiss-Prot RNPH_ECO24  Ribonuclease PH
[B] Escherichia coli O157:H7ECO5704316  UniProtKB/Swiss-Prot RNPH_ECO57  Residues 1 to 223 of 238 are 99.10 pct identical to residues 1 to 223 of 228 from Escherichia coli K-12 Strain MG1655: B3643 RNase PH
[B] Escherichia coli O157:H7 (strain EC4115 / EHEC)ECO5E04310  UniProtKB/Swiss-Prot RNPH_ECO5E  Ribonuclease PH
[B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)ECOLU04037  UniProtKB/TrEMBL B7NEU7  Ribonuclease PH
[B] Escherichia coli O1:K1 / APECECOK103607  UniProtKB/Swiss-Prot RNPH_ECOK1  ribonuclease PH
[B] Escherichia coli O45:K1 (strain S88 / ExPEC)ECO4503859  UniProtKB/TrEMBL B7MFK4  Ribonuclease PH
[B] Escherichia coli O6ECOL604330  UniProtKB/Swiss-Prot RNPH_ECOL6  Ribonuclease PH
[B] Escherichia coli O6:K15:H31 (strain 536)ECOL503684  UniProtKB/Swiss-Prot RNPH_ECOL5  ribonuclease PH
[B] Escherichia coli O7:K1 (strain IAI39 / ExPEC)ECO7I03949  UniProtKB/TrEMBL B7NQ05  Ribonuclease PH
[B] Escherichia coli O81 (strain ED1a)ECO8104098  UniProtKB/TrEMBL B7N1U4  Ribonuclease PH
[B] Escherichia coli O9:H4 (strain HS)ECOHS03589  UniProtKB/Swiss-Prot RNPH_ECOHS  Ribonuclease PH
[B] Klebsiella pneumoniae (strain 342)KLEP300109  UniProtKB/Swiss-Prot RNPH_KLEP3  Ribonuclease PH
[B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)KLEP703926  UniProtKB/Swiss-Prot RNPH_KLEP7  Ribonuclease PH
[B] Erwinia carotovora (subsp. atroseptica)ERWCT00136  UniProtKB/Swiss-Prot RNPH_ERWCT  Similar to Escherichia coli ribonuclease PH Rph or b3643 SWALL:RNPH_ECOLI (SWALL:P03842) (238 aa) fasta scores: E(): 8.2e-78, 85.71% id in 238 aa ribonuclease PH
[B] Photorhabdus luminescens (subsp. laumondii)PHOLL04714  UniProtKB/Swiss-Prot RNPH_PHOLL  ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[B] Proteus mirabilis (strain HI4320)PROMH03117  UniProtKB/Swiss-Prot RNPH_PROMH  Ribonuclease PH
[B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)SALAR03736  UniProtKB/Swiss-Prot RNPH_SALAR  Putative uncharacterized protein
[B] Salmonella agona (strain SL483)SALA403665  UniProtKB/Swiss-Prot RNPH_SALA4  Ribonuclease PH
[B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67SALCH03603  UniProtKB/Swiss-Prot RNPH_SALCH  IPR002381: Ribonuclease PH RNase PH
[B] Salmonella dublin (strain CT_02021853)SALDC03730  UniProtKB/Swiss-Prot RNPH_SALDC  Ribonuclease PH
[B] Salmonella enteritidis PT4 (strain P125109)SALEP03531  UniProtKB/Swiss-Prot RNPH_SALEP  RNase PH
[B] Salmonella gallinarum (strain 287/91 / NCTC 13346)SALG203551  UniProtKB/Swiss-Prot RNPH_SALG2  RNase PH
[B] Salmonella heidelberg (strain SL476)SALHS03776  UniProtKB/Swiss-Prot RNPH_SALHS  Ribonuclease PH
[B] Salmonella newport (strain SL254)SALNS03744  UniProtKB/Swiss-Prot RNPH_SALNS  Ribonuclease PH
[B] Salmonella paratyphi A (strain AKU_12601)SALPK03489  UniProtKB/Swiss-Prot RNPH_SALPK  RNase PH
[B] Salmonella paratyphi-aSALPA03337  UniProtKB/Swiss-Prot RNPH_SALPA  similar to Salmonella typhi CT18 RNase PH RNase PH
[B] Salmonella schwarzengrund (strain CVM19633)SALSV03644  UniProtKB/Swiss-Prot RNPH_SALSV  Ribonuclease PH
[B] Salmonella typhiSALTI03697  UniProtKB/Swiss-Prot RNPH_SALTI  Ribonuclease PH
[B] Salmonella typhimuriumSALTY03585  UniProtKB/Swiss-Prot RNPH_SALTY  ribonuclease PH (SW:RNPH_SALTY) RNase PH
[B] Serratia proteamaculans (strain 568)SERP504817  UniProtKB/Swiss-Prot RNPH_SERP5  Ribonuclease PH
[B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)SHIB303164  UniProtKB/Swiss-Prot RNPH_SHIB3  Ribonuclease PH
[B] Shigella boydii serotype 4 (strain Sb227)SHIBS03024  UniProtKB/Swiss-Prot RNPH_SHIBS  Code: J; COG: COG0689 RNase PH
[B] Shigella dysenteriae serotype 1 (strain Sd197)SHIDS03187  UniProtKB/Swiss-Prot RNPH_SHIDS  Code: J; COG: COG0689 RNase PH
[B] Shigella flexneriSHIFL03329   NP_709422.1  Residues 9 to 246 of 246 are 99 pct identical to residues 1 to 238 of a 238 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290223.1 RNase PH
[B] Shigella flexneri serotype 5b (strain 8401)SHIF803357  UniProtKB/Swiss-Prot RNPH_SHIF8  RNase PH Code: J; COG: COG0689
[B] Shigella sonnei (strain Ss046)SHISS03123  UniProtKB/Swiss-Prot RNPH_SHISS  Code: J; COG: COG0689 RNase PH
[B] Sodalis glossinidius (strain morsitans)SODGM02179  UniProtKB/Swiss-Prot RNPH_SODGM  ribonuclease PH
[B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)YERE800055  UniProtKB/Swiss-Prot RNPH_YERE8  Ribonuclease PH
[B] Yersinia pestisYERPE00040  UniProtKB/Swiss-Prot RNPH_YERPE  Ribonuclease PH
[B] Yersinia pestis (biovar Antiqua strain Antiqua)YERPA03302  UniProtKB/Swiss-Prot RNPH_YERPA  Ribonuclease PH
[B] Yersinia pestis (biovar Antiqua strain Nepal516)YERPN03652  UniProtKB/Swiss-Prot RNPH_YERPN  Ribonuclease PH
[B] Yersinia pestis (strain Pestoides F)YERPP03652  UniProtKB/Swiss-Prot RNPH_YERPP  Ribonuclease PH
[B] Yersinia pestis bv. Antiqua (strain Angola)YERPG00040  UniProtKB/Swiss-Prot RNPH_YERPG  Ribonuclease PH
[B] Yersinia pseudotuberculosisYERPS00041  UniProtKB/Swiss-Prot RNPH_YERPS  Ribonuclease PH
[B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758)YERP300052  UniProtKB/Swiss-Prot RNPH_YERP3  Ribonuclease PH
[B] Yersinia pseudotuberculosis serotype IB (strain PB1/+)YERPB00041  UniProtKB/Swiss-Prot RNPH_YERPB  Ribonuclease PH
[B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII)YERPY04082  UniProtKB/Swiss-Prot RNPH_YERPY  Ribonuclease PH
[B] Coxiella burnetiiCOXBU00284  UniProtKB/Swiss-Prot RNPH_COXBU  similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH
[B] Coxiella burnetii (strain CbuG_Q212)COXB201482  UniProtKB/TrEMBL B6J205  Ribonuclease PH
[B] Coxiella burnetii (strain Dugway 5J108-111)COXBN01664  UniProtKB/Swiss-Prot RNPH_COXBN  Ribonuclease PH
[B] Coxiella burnetii (strain RSA 331 / Henzerling II)COXBR00338  UniProtKB/Swiss-Prot RNPH_COXBR  Ribonuclease PH
[B] Legionella pneumophila (strain Corby)LEGPC01444  UniProtKB/Swiss-Prot RNPH_LEGPC  Ribonuclease PH
[B] Legionella pneumophila (strain Lens)LEGPL01982  UniProtKB/Swiss-Prot RNPH_LEGPL  Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[B] Legionella pneumophila (strain Paris)LEGPA01985  UniProtKB/Swiss-Prot RNPH_LEGPA  Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
[B] Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152)LEGPH01953  UniProtKB/Swiss-Prot RNPH_LEGPH  conserved gene ribonuclease PH
[B] Methylococcus capsulatusMETCA02837  UniProtKB/Swiss-Prot RNPH_METCA  identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)ALCBS00205  UniProtKB/Swiss-Prot RNPH_ALCBS  Ribonuclease PH
[B] Hahella chejuensis (strain KCTC 2396)HAHCH05989  UniProtKB/Swiss-Prot RNPH_HAHCH  ribonuclease PH TIGRFAMsMatches:TIGR01966
[B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)CHRSD03185  UniProtKB/TrEMBL Q1QSK8  ribonuclease PH
[B] Marinomonas sp. (strain MWYL1)MARMS04289  UniProtKB/Swiss-Prot RNPH_MARMS  Ribonuclease PH
[B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03)ACTPJ00055  UniProtKB/Swiss-Prot RNPH_ACTPJ  Ribonuclease PH
[B] Actinobacillus pleuropneumoniae serotype 5b (strain L20)ACTP200054  UniProtKB/Swiss-Prot RNPH_ACTP2  Ribonuclease PH
[B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76)ACTP700055  UniProtKB/Swiss-Prot RNPH_ACTP7  Ribonuclease PH
[B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z)ACTSZ00414  UniProtKB/Swiss-Prot RNPH_ACTSZ  Ribonuclease PH
[B] Haemophilus ducreyiHAEDU00256  UniProtKB/Swiss-Prot RNPH_HAEDU  tRNA nucleotidyltransferase ribonuclease PH
[B] Haemophilus influenzaeHAEIN00267  UniProtKB/Swiss-Prot RNPH_HAEIN  Ribonuclease PH
[B] Haemophilus influenzae (strain 86-028NP)HAEI800327  UniProtKB/Swiss-Prot RNPH_HAEI8  RNase PH; tRNA nucleotidyltransferase; Similar to: HI0273, RNPH_HAEIN ribonuclease PH
[B] Haemophilus influenzae (strain PittEE)HAEIE00311  UniProtKB/Swiss-Prot RNPH_HAEIE  Ribonuclease PH
[B] Haemophilus influenzae (strain PittGG)HAEIG00668  UniProtKB/Swiss-Prot RNPH_HAEIG  Ribonuclease PH
[B] Haemophilus parasuis serovar 5 (strain SH0165)HAEPS01167  UniProtKB/Swiss-Prot RNPH_HAEPS  Ribonuclease PH
[B] Haemophilus somnus (strain 129PT)HAES101295  UniProtKB/Swiss-Prot RNPH_HAES1  Ribonuclease PH
[B] Haemophilus somnus (strain 2336)HAES200319  UniProtKB/Swiss-Prot RNPH_HAES2  Ribonuclease PH
[B] Mannheimia succiniciproducens (strain MBEL55E)MANSM00252  UniProtKB/Swiss-Prot RNPH_MANSM  RNase PH Rph protein
[B] Pasteurella multocidaPASMU01876  UniProtKB/Swiss-Prot RNPH_PASMU  Ribonuclease PH
[B] Acinetobacter baumannii (strain AB0057)ACIB500078  UniProtKB/Swiss-Prot RNPH_ACIB5  Ribonuclease PH
[B] Acinetobacter baumannii (strain AB307-0294)ACIB303392  UniProtKB/Swiss-Prot RNPH_ACIB3  Ribonuclease PH
[B] Acinetobacter baumannii (strain ACICU)ACIBC00063  UniProtKB/Swiss-Prot RNPH_ACIBC  RNase PH
[B] Acinetobacter baumannii (strain AYE)ACIBY03525  UniProtKB/Swiss-Prot RNPH_ACIBY  Ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[B] Acinetobacter baumannii (strain SDF)ACIBS00040  UniProtKB/Swiss-Prot RNPH_ACIBS  Ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[B] Acinetobacter sp. (strain ADP1)ACIAD00047   CAG67032.1  Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[B] Psychrobacter arcticus (strain DSM 17307 / 273-4)PSYA201843  UniProtKB/Swiss-Prot RNPH_PSYA2  Ribonuclease PH
[B] Psychrobacter cryohalolentis (strain K5)PSYCK02133  UniProtKB/Swiss-Prot RNPH_PSYCK  ribonuclease PH
[B] Psychrobacter sp. (strain PRwf-1)PSYWF02124  UniProtKB/Swiss-Prot RNPH_PSYWF  Ribonuclease PH
[B] Cellvibrio japonicus (strain Ueda107)CELJU00200  UniProtKB/Swiss-Prot RNPH_CELJU  Ribonuclease PH
[B] Pseudomonas aeruginosaPSEAE05321  UniProtKB/Swiss-Prot RNPH_PSEAE  Ribonuclease PH
[B] Pseudomonas aeruginosa (strain LESB58)PSEA805701  UniProtKB/Swiss-Prot RNPH_PSEA8  Ribonuclease PH
[B] Pseudomonas aeruginosa (strain PA7)PSEA705990  UniProtKB/Swiss-Prot RNPH_PSEA7  Ribonuclease PH
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB05647  UniProtKB/Swiss-Prot RNPH_PSEAB  ribonuclease PH
[B] Pseudomonas entomophila (strain L48)PSEE405044  UniProtKB/TrEMBL Q1I2T6  ribonuclease PH (RNase PH), tRNA nucleotidyltransferase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF505963  UniProtKB/Swiss-Prot RNPH_PSEF5  identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF05532  UniProtKB/Swiss-Prot RNPH_PSEPF  Ribonuclease PH
[B] Pseudomonas mendocina (strain ymp)PSEMY04327  UniProtKB/Swiss-Prot RNPH_PSEMY  Ribonuclease PH
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP105136  UniProtKB/Swiss-Prot RNPH_PSEP1  Ribonuclease PH
[B] Pseudomonas putida (strain GB-1)PSEPG05294  UniProtKB/Swiss-Prot RNPH_PSEPG  ribonuclease PH unknown EC_number=2.7.7.56 KEGG: pen:PSEEN5439 ribonuclease PH (RNase PH), tRNA nucleotidyltransferase TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Pseudomonas putida (strain KT2440)PSEPK05183  UniProtKB/Swiss-Prot RNPH_PSEPK  similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH
[B] Pseudomonas putida (strain W619)PSEPW00179  UniProtKB/Swiss-Prot RNPH_PSEPW  Ribonuclease PH
[B] Pseudomonas stutzeri (strain A1501)PSEU500458  UniProtKB/Swiss-Prot RNPH_PSEU5  Ribonuclease PH
[B] Pseudomonas syringae (pv. tomato)PSESM00069  UniProtKB/Swiss-Prot RNPH_PSESM  similar to SP:P03842, GB:U07987, SP:P01871, PID:184726, and PID:468239; identified by sequence similarity; putative ribonuclease PH
[B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)PSE1400179  UniProtKB/TrEMBL Q48Q13  identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH
[B] Pseudomonas syringae pv. syringae (strain B728a)PSEU200211  UniProtKB/Swiss-Prot RNPH_PSEU2  Ribonuclease PH
[B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017)FRAP200431  UniProtKB/Swiss-Prot RNPH_FRAP2  tRNA nucleotidyltransferase
[B] Francisella tularensis (subsp. tularensis)FRATT00826  UniProtKB/Swiss-Prot RNPH_FRATT  Similar to P03842 Ribonuclease PH from Escherichia coli (238 aa). FASTA: opt: 997 Z-score: 1218.8 bits: 232.9 E(): 5.4e-60 Smith-Waterman score: 997; 65.665identity in 233 aa overlap. Ribonuclease PH
[B] Francisella tularensis subsp. holarctica (strain FTA)FRATF00275  UniProtKB/Swiss-Prot RNPH_FRATF  Ribonuclease PH
[B] Francisella tularensis subsp. holarctica (strain LVS)FRATH00317  UniProtKB/Swiss-Prot RNPH_FRATH  Ribonuclease PH
[B] Francisella tularensis subsp. holarctica (strain OSU18)FRATO00264  UniProtKB/Swiss-Prot RNPH_FRATO  TRNA nucleotidyltransferase
[B] Francisella tularensis subsp. mediasiatica (strain FSC147)FRATM00355  UniProtKB/Swiss-Prot RNPH_FRATM  Ribonuclease PH
[B] Francisella tularensis subsp. novicida (strain U112)FRATN00379  UniProtKB/Swiss-Prot RNPH_FRATN  ribonuclease PH
[B] Francisella tularensis subsp. tularensis (strain WY96-3418)FRATW01033  UniProtKB/Swiss-Prot RNPH_FRATW  Ribonuclease PH
[B] Mycobacteriophage FRAT1FRAT100824  UniProtKB/Swiss-Prot RNPH_FRAT1  Ribonuclease PH Similar to P03842 Ribonuclease PH from Escherichia coli (238 aa). FASTA: opt: 997 Z-score: 1218.8 bits: 232.9 E(): 5.4e-60 Smith-Waterman score: 997; 65.665identity in 233 aa overlap.
[B] Aliivibrio salmonicida (strain LFI1238)ALISL00152  UniProtKB/Swiss-Prot RNPH_ALISL  Ribonuclease PH
[B] Vibrio fischeri (strain MJ11)VIBFM00108  UniProtKB/Swiss-Prot RNPH_VIBFM  Ribonuclease PH
[B] Photobacterium profundumPHOPR00176  UniProtKB/Swiss-Prot RNPH_PHOPR  putative ribonuclease PH
[B] Vibrio choleraeVIBCH00208  UniProtKB/TrEMBL A2PA45  similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH
[B] Vibrio cholerae (strain ATCC 39541 / O395)VIBC302412  UniProtKB/TrEMBL A5F421  Ribonuclease PH
[B] Vibrio cholerae serotype O1 (strain M66-2)VIBCM00194  UniProtKB/TrEMBL C3LQH3  
[B] Vibrio fischeri (strain ATCC 700601 / ES114)VIBF100111  UniProtKB/Swiss-Prot RNPH_VIBF1  ribonuclease PH
[B] Vibrio harveyi (strain ATCC BAA-1116 / BB120)VIBHB00531  UniProtKB/TrEMBL A7MSP2  Putative uncharacterized protein
[B] Vibrio parahaemolyticusVIBPA00177  UniProtKB/Swiss-Prot RNPH_VIBPA  similar to GB:AAF93386.1 (AE004111) percent identity 86 in 236 aa ribonuclease PH
[B] Vibrio splendidus (strain LGP32)VIBSL00152  UniProtKB/Swiss-Prot RNPH_VIBSL  Ribonuclease PH
[B] Vibrio vulnificusVIBVU00784  UniProtKB/Swiss-Prot RNPH_VIBVU  COG0689 RNase PH
[B] Vibrio vulnificus (strain YJ016)VIBVY00277  UniProtKB/Swiss-Prot RNPH_VIBVY  Ribonuclease PH
[B] Stenotrophomonas maltophilia (strain K279a)STRMK03613  UniProtKB/Swiss-Prot RNPH_STRMK  Putative ribonuclease PH
[B] Stenotrophomonas maltophilia (strain R551-3)STRM503251  UniProtKB/Swiss-Prot RNPH_STRM5  Ribonuclease PH
[B] Xanthomonas axonopodis (pv. citri)XANAC03298  UniProtKB/Swiss-Prot RNPH_XANAC  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease PH
[B] Xanthomonas campestris pv. campestrisXANCP03156  UniProtKB/Swiss-Prot RNPH_XANCP  Ribonuclease PH
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC800919  UniProtKB/Swiss-Prot RNPH_XANC8  ribonuclease PH
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB00932  UniProtKB/Swiss-Prot RNPH_XANCB  Ribonuclease PH
[B] Xanthomonas campestris pv. vesicatoria (strain 85-10)XANC503426  UniProtKB/Swiss-Prot RNPH_XANC5  ribonuclease PH
[B] Xanthomonas oryzae (pv. oryzae)XANOR01027  UniProtKB/TrEMBL Q5H3S4  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease PH
[B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018)XANOM00949  UniProtKB/Swiss-Prot RNPH_XANOM  Ribonuclease PH Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker
[B] Xanthomonas oryzae pv. oryzae (strain PXO99A)XANOP03589  UniProtKB/Swiss-Prot RNPH_XANOP  Ribonuclease PH
[B] Xylella fastidiosaXYLFA01498  UniProtKB/Swiss-Prot RNPH_XYLFA  similar to SP|P03842 (percent identity: 63 %/query alignment coverage: 97.9 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder ribonuclease PH
[B] Xylella fastidiosa (strain M12)XYLFM00742  UniProtKB/Swiss-Prot RNPH_XYLFM  tRNA nucleotidyltransferase
[B] Xylella fastidiosa (strain M23)XYLF200720  UniProtKB/Swiss-Prot RNPH_XYLF2  Ribonuclease PH
[B] Xylella fastidiosa (strain Temecula1 / ATCC 700964)XYLFT00674  UniProtKB/Swiss-Prot RNPH_XYLFT  Ribonuclease PH
[B] Magnetococcus sp. (strain MC-1)MAGSM00050  UniProtKB/TrEMBL A0L3N7  ribonuclease PH KEGG: bpm:BURPS1710b_3051 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Opitutus terrae (strain DSM 11246 / PB90-1)OPITP04174  UniProtKB/TrEMBL B1ZNZ4  Ribonuclease PH
[B] Akkermansia muciniphila (strain ATCC BAA-835)AKKM800387  UniProtKB/TrEMBL B2UNC2  Ribonuclease PH