| [A] Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) | DESK101320 | B8D6B9 | Probable exosome complex exonuclease 1 |
| [A] Hyperthermus butylicus (strain DSM 5456 / JCM 9403) | HYPBU00550 | ECX1_HYPBU | Ribonuclease PH |
| [A] Sulfolobus acidocaldarius | SULAC00570 | ECX1_SULAC | ribonuclease PH |
| [A] Thermofilum pendens (strain Hrk 5) | THEPD00576 | A1RXQ6 | Exosome complex exonuclease 1 |
| [A] Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) | METS300240 | A5UJR9 | Ribonuclease PH, Rph |
| [A] Pyrococcus abyssi | PYRAB00611 | ECX1_PYRAB | Probable exosome complex exonuclease 1 |
| [A] Pyrococcus furiosus | PYRFU01556 | ECX1_PYRFU | Probable exosome complex exonuclease 1 |
| [A] Thermococcus kodakaraensis | PYRKO01628 | ECX1_PYRKO | exosome subunit Rrp41p homolog, 3'-5' exoribonuclease |
| [A] Thermococcus onnurineus (strain NA1) | THEON00031 | ECX1_THEON | 3'-5' exoribonuclease |
| [B] Acidobacteria bacterium (strain Ellin345) | ACIBL01612 | Q1IR82 | ribonuclease PH |
| [B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) | ACIC502673 | C1F3D1 | tRNA nucleotidyltransferase |
| [B] Solibacter usitatus (strain Ellin6076) | SOLUE07537 | RNPH_SOLUE | ribonuclease PH KEGG: aba:Acid345_1616 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Corynebacterium diphtheriae | CORDI01802 | RNPH_CORDI | Similar to Escherichia coli ribonuclease PH Rph SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 9.1e-48, 58.29% id in 235 aa, and to Mycobacterium leprae probable ribonuclease PH ML1174 SW:RNPH_MYCLE (P37939) (259 aa) fasta scores: E(): 4.4e-54, 64.13% id in 237 aa Putative ribonuclease PH |
| [B] Corynebacterium efficiens | COREF02346 | RNPH_COREF | similar to U00014-5|AAA50880.1| percent identity: 64 in 238 aa putative ribonuclease |
| [B] Corynebacterium glutamicum | CORGL02970 | RNPH_CORGL | Ribonuclease PH |
| [B] Corynebacterium glutamicum (strain R) | CORGB02457 | RNPH_CORGB | Hypothetical protein |
| [B] Corynebacterium jeikeium (strain K411) | CORJK00470 | Q4JX02 | ribonuclease PH |
| [B] Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) | CORU701457 | B1VGW9 | Ribonuclease PH |
| [B] Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) | MYCA901465 | RNPH_MYCA9 | Probable ribonuclease PH |
| [B] Mycobacterium avium (strain 104) | MYCA101469 | RNPH_MYCA1 | ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Mycobacterium paratuberculosis | MYCPA02396 | RNPH_MYCPA | RphA |
| [B] Mycobacterium gilvum (strain PYR-GCK) | MYCGI02275 | RNPH_MYCGI | ribonuclease PH TIGRFAM: ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH |
| [B] Mycobacterium leprae | MYCLE01171 | RNPH_MYCLE | Identical to the previously sequenced Mycobacterium leprae probable ribonuclease PH (EC 2.7.7.56) SW:RNPH_MYCLE (P37939) (259 aa); Fasta score E(): 0, 99.6% identity in 259 aa overlap. Also highly similar to many other ribonucleases including: Mycobacterium tuberculosis SW:RNPH_MYCTU (Q10628) (259 aa); Fasta score E(): 0, 88.8% identity in 259 aa overlap and Escherichia coli SW:RNPH_ECOLI (P03842) (238 aa); Fasta score E(): 0, 55.7% identity in 237 aa overlap. Contains Pfam match to entry PF01138 RNase_PH, 3' exoribonuclease family. Contains PS01277 Ribonuclease PH signature. ribonuclease PH |
| [B] Mycobacterium leprae (strain Br4923) | MYCLB01161 | RNPH_MYCLB | Ribonuclease PH |
| [B] Mycobacterium marinum (strain ATCC BAA-535 / M) | MYCMM03947 | B2HQF7 | Ribonuclease RphA |
| [B] Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) | MYCS204626 | RNPH_MYCS2 | Ribonuclease PH |
| [B] Mycobacterium sp. (strain JLS) | MYCSJ03763 | RNPH_MYCSJ | ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Mycobacterium sp. (strain KMS) | MYCSK03825 | RNPH_MYCSK | ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Mycobacterium sp. (strain MCS) | MYCSS03805 | RNPH_MYCSS | Ribonuclease PH |
| [B] Mycobacterium bovis | MYCBO01369 | RNPH_MYCBO | Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC 2.7.7.56), highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY. PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Mycobacterium bovis (strain BCG / Paris 1173P2) | MYCBP01375 | RNPH_MYCBP | Probable ribonuclease rphA |
| [B] Mycobacterium tuberculosis | MYCTU02544 | RNPH_MYCTU | Ribonuclease PH |
| [B] Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) | MYCTA01359 | RNPH_MYCTA | Ribonuclease PH |
| [B] Mycobacterium tuberculosis (strain F11) | MYCTF01327 | A5WM24 | ribonuclease rphA (RNase ph) Mapped to H37Rv Rv1340 |
| [B] Mycobacterium ulcerans (strain Agy99) | MYCUA03162 | RNPH_MYCUA | ribonuclease RphA cytoplasmic protein RNase ph is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [catalytic activity: {tRNA}(n+1) + phosphate = {tRNA}(N) + a nucleoside diphosphate] |
| [B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) | MYCVP04137 | RNPH_MYCVP | ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Nocardia farcinica | NOCFA01098 | RNPH_NOCFA | putative RNase PH |
| [B] Rhodococcus erythropolis (strain PR4 / NBRC 100887) | RHOE403871 | RNPH_RHOE4 | Ribonuclease PH |
| [B] Rhodococcus opacus (strain B4) | RHOOB01141 | C1AVV8 | Ribonuclease PH |
| [B] Rhodococcus sp. (strain RHA1) | RHOSR01396 | Q0SGT5 | TRNA nucleotidyltransferase |
| [B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B) | ACIC101680 | A0LVJ6 | ribonuclease PH KEGG: sco:SCO2904 putative ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Frankia sp. (strain CcI3) | FRASC00847 | RNPH_FRASC | ribonuclease PH |
| [B] Frankia sp. (strain EAN1pec) | FRASN05476 | RNPH_FRASN | Ribonuclease PH |
| [B] Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) | KINRD03726 | A6WEI7 | Ribonuclease PH |
| [B] Tropheryma whipplei (strain TW08/27) | TROW800608 | NP_789565.1 | Similar to Escherichia coli ribonuclease PH Rph or b3643 SWALL:RNPH_ECOLI (SWALL:P03842) (238 aa) fasta scores: E(): 5.3e-42, 49.57% id in 236 aa, and to Bifidobacterium longum NCC2705 probable ribonuclease PH bl0286 SWALL:AAN24126 (EMBL:AE014647) (258 aa) fasta scores: E(): 3.3e-46, 54.39% id in 239 aa ribonuclease PH |
| [B] Tropheryma whipplei (strain Twist) | TROWT00620 | NP_787750.1 | ribonuclease PH |
| [B] Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) | CLAM301312 | A5CQI7 | Ribonuclease PH |
| [B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) | CLAMS02025 | B0RFB1 | Ribonuclease PH |
| [B] Leifsonia xyli (subsp. xyli) | LEIXX01065 | RNPH_LEIXX | identified by sequence similarity ribonuclease PH |
| [B] Arthrobacter aurescens (strain TC1) | ARTAT02450 | A1R7S9 | Ribonuclease PH |
| [B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) | ARTCA02273 | B8HAW4 | Ribonuclease PH |
| [B] Arthrobacter sp. (strain FB24) | ARTS202554 | A0JY40 | ribonuclease PH KEGG: lxx:Lxx13580 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201) | KOCRD00998 | B2GM08 | Ribonuclease PH |
| [B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) | RENSM01406 | A9WNP6 | Ribonuclease PH |
| [B] Salinispora arenicola (strain CNS-205) | SALAI00968 | RNPH_SALAI | Ribonuclease PH |
| [B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) | SALTO01088 | RNPH_SALTO | RNAse PH |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ01280 | RNPH_NOCSJ | Ribonuclease PH |
| [B] Propionibacterium acnes | PROAC01640 | YP_056364.1 | probable ribonuclease PH |
| [B] Saccharopolyspora erythraea (strain NRRL 23338) | SACEN01173 | RNPH_SACEN | Ribonuclease PH |
| [B] Phytoplasma sp. (strain STRAWB1) | STRAW05168 | RNPH_STRAW | Ribonuclease PH |
| [B] Streptomyces coelicolor | STRCO02882 | RNPH_STRCO | SCE19A.04c, rph, probable ribonuclease PH, len: 245 aa; highly similar to many e.g. SW:RNPH_ECOLI (EMBL:X00781), rph, Escherichia coli ribonuclease PH (238 aa), fasta scores; opt: 916 z-score: 1116.8 E(): 0, 60.8% identity in 240 aa overlap. Contains Pfam match to entry PF01138 RNase_PH, 3' exoribonuclease family and PS01277 Ribonuclease PH signature putative ribonuclease PH |
| [B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) | STRGG04511 | RNPH_STRGG | Putative ribonuclease PH |
| [B] Thermobifida fusca (strain YX) | THEFY02356 | Q47MC4 | ribonuclease PH |
| [B] Bifidobacterium longum | BIFLO00929 | RNPH_BIFLO | Ribonuclease PH |
| [B] Bifidobacterium longum (strain DJO10A) | BIFLD01014 | B3DTK8 | RNase PH |
| [B] Symbiobacterium thermophilum | SYMTH00334 | RNPH_SYMTH | ribonuclease PH (tRNA nucleotidyltransferase) |
| [B] Aquifex aeolicus | AQUAE00645 | RNPH_AQUAE | Ribonuclease PH |
| [B] Hydrogenobaculum sp. (strain Y04AAS1) | HYDS000851 | RNPH_HYDS0 | Ribonuclease PH |
| [B] Sulfurihydrogenibium sp. (strain YO3AOP1) | SULSY00506 | RNPH_SULSY | Ribonuclease PH |
| [B] Chloroflexus aggregans (strain MD-66 / DSM 9485) | CHLAD03534 | B8GAB7 | Ribonuclease PH |
| [B] Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) | CHLSY00251 | B9LHJ0 | Ribonuclease PH |
| [B] Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) | CHLAA00240 | A9WCA5 | Ribonuclease PH |
| [B] Roseiflexus castenholzii (strain DSM 13941 / HLO8) | ROSCS03825 | A7NQX4 | ribonuclease PH KEGG: rrs:RoseRS_2001 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Roseiflexus sp. (strain RS-1) | ROSS101928 | A5UUT4 | Ribonuclease PH |
| [B] Dehalococcoides ethenogenes (strain 195) | DEHE101166 | RNPH_DEHE1 | identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Dehalococcoides sp. (strain BAV1) | DEHSB01072 | RNPH_DEHSB | Ribonuclease PH |
| [B] Dehalococcoides sp. (strain CBDB1) | DEHSC01016 | RNPH_DEHSC | ribonuclease PH |
| [B] Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) | THERP00422 | B9KY88 | Ribonuclease PH |
| [B] Acaryochloris marina (strain MBIC 11017) | ACAM102682 | RNPH_ACAM1 | Ribonuclease PH |
| [B] Cyanothece (strain ATCC 51142) | CYAA504454 | RNPH_CYAA5 | Ribonuclease PH |
| [B] Cyanothece sp. (strain PCC 7425 / ATCC 29141) | CYAP404716 | RNPH_CYAP4 | Ribonuclease PH |
| [B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) | SYNP202044 | B1XI78 | Ribonuclease PH |
| [B] Synechococcus sp. (strain CC9311) | SYNS300312 | Q0IDC1 | Ribonuclease PH |
| [B] Synechococcus sp. (strain CC9605) | SYNSC00263 | RNPH_SYNSC | ribonuclease PH |
| [B] Synechococcus sp. (strain CC9902) | SYNS902054 | Q3AUQ5 | Ribonuclease PH |
| [B] Synechococcus sp. (strain JA-2-3B'a(2-13)) | SYNJB01671 | RNPH_SYNJB | ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Synechococcus sp. (strain JA-3-3Ab) | SYNJA02465 | RNPH_SYNJA | ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Synechococcus sp. (strain PCC 6301) | SYNP600474 | RNPH_SYNP6 | hypothetical protein |
| [B] Synechococcus sp. (strain WH7803) | SYNPW00320 | A5GII1 | Ribonuclease PH |
| [B] Synechococcus sp. (strain WH8102) | SYNPX00276 | RNPH_SYNPX | Ribonuclease PH |
| [B] Thermosynechococcus elongatus (strain BP-1) | THEEB00575 | RNPH_THEEB | Ribonuclease PH |
| [B] Anabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT02613 | RNPH_ANAVT | Ribonuclease PH |
| [B] Anabaena sp. (strain PCC 7120) | ANASP00067 | RNPH_ANASP | Ribonuclease PH |
| [B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102) | NOSP702225 | RNPH_NOSP7 | Ribonuclease PH |
| [B] Trichodesmium erythraeum (strain IMS101) | TRIEI01747 | Q113J5 | Ribonuclease PH |
| [B] Prochlorococcus marinus (strain MIT 9303) | PROM302418 | A2CCH6 | Ribonuclease PH |
| [B] Prochlorococcus marinus (strain MIT 9313) | PROMM01821 | RNPH_PROMM | ribonuclease PH |
| [B] Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) | DEIDV02439 | C1CZJ0 | Putative tRNA nucleotidyltransferase |
| [B] Deinococcus geothermalis (strain DSM 11300) | DEIGD02059 | Q1IWK4 | ribonuclease PH KEGG: dra:DR1585 ribonuclease PH, ev=1e-107, 80% identity TIGRFAM: ribonuclease PH: (8.2e-53) PFAM: 3' exoribonuclease: (6.4e-27) |
| [B] Deinococcus radiodurans | DEIRA01544 | RNPH_DEIRA | Ribonuclease PH |
| [B] Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) | DICT601165 | RNPH_DICT6 | Ribonuclease PH |
| [B] Dictyoglomus turgidum (strain Z-1310 / DSM 6724) | DICTD01270 | RNPH_DICTD | Ribonuclease PH |
| [B] Bacillus amyloliquefaciens (strain FZB42) | BACA202453 | RNPH_BACA2 | Rph |
| [B] Bacillus anthracis | BACAN04348 | RNPH_BACAN | similar to GP:8102038, GB:M93284, SP:P54317, and PID:187232; identified by sequence similarity; putative ribonuclease PH |
| [B] Bacillus cereus (strain AH187) | BACC704392 | RNPH_BACC7 | Ribonuclease PH |
| [B] Bacillus cereus (strain ATCC 10987) | BACC104542 | RNPH_BACC1 | identified by match to protein family HMM PF01138; match to protein family HMM PF03725 ribonuclease PH |
| [B] Bacillus cereus (strain ATCC 14579 / DSM 31) | BACCR04285 | RNPH_BACCR | Ribonuclease PH |
| [B] Bacillus cereus (strain G9842) | BACC204494 | RNPH_BACC2 | Ribonuclease PH |
| [B] Bacillus cereus (strain ZK) | BACCZ04194 | RNPH_BACCZ | ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98) | BACCN03044 | RNPH_BACCN | Ribonuclease PH |
| [B] Bacillus clausii (strain KSM-K16) | BACSK02640 | RNPH_BACSK | ribonuclease PH |
| [B] Bacillus halodurans | BACHD03018 | RNPH_BACHD | ribonuclease PH |
| [B] Bacillus pumilus (strain SAFR-032) | BACP202446 | RNPH_BACP2 | tRNA nucleotidyltransferase |
| [B] Bacillus subtilis | BACSU02835 | RNPH_BACSU | Ribonuclease PH |
| [B] Bacillus thuringiensis (strain Al Hakam) | BACAH03862 | A0RJ97 | ribonuclease PH |
| [B] Bacillus thuringiensis (subsp. konkukian) | BACHK04148 | RNPH_BACHK | Structural feature(s) predicted by Psort:Uncleavable N-term signal seq: 4282253 - 4282221; Transmembrane: 4282240 - 4282224 ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Bacillus weihenstephanensis (strain KBAB4) | BACWK04215 | RNPH_BACWK | Ribonuclease PH |
| [B] Geobacillus kaustophilus | GEOKA02638 | RNPH_GEOKA | ribonuclease PH |
| [B] Geobacillus thermodenitrificans (strain NG80-2) | GEOTN02531 | RNPH_GEOTN | Ribonuclease PH |
| [B] Oceanobacillus iheyensis | OCEIH02098 | RNPH_OCEIH | CDS_ID OB2106; tRNA nucleotidyltransferase ribonuclease PH |
| [B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) | EXIS202107 | RNPH_EXIS2 | Ribonuclease PH |
| [B] Listeria innocua | LISIN01199 | RNPH_LISIN | similar to ribonuclease PH |
| [B] Listeria monocytogenes | LISMO01234 | RNPH_LISMO | similar to ribonuclease PH |
| [B] Listeria monocytogenes (serotype 4b / strain F2365) | LISMF01232 | RNPH_LISMF | identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Listeria monocytogenes serotype 4a (strain HCC23) | LISMH01390 | RNPH_LISMH | Ribonuclease PH |
| [B] Listeria monocytogenes serotype 4b (strain Clip81459) | LISMC01219 | RNPH_LISMC | Putative ribonuclease PH |
| [B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) | LISW601193 | RNPH_LISW6 | Rph protein |
| [B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN01787 | RNPH_BREBN | Ribonuclease PH |
| [B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320) | ANATD00777 | RNPH_ANATD | Ribonuclease PH |
| [B] Alkaliphilus metalliredigens (strain QYMF) | ALKMQ00873 | A6TLV8 | Ribonuclease PH |
| [B] Alkaliphilus oremlandii (strain OhILAs) | ALKOO00546 | A8MLK5 | Ribonuclease PH |
| [B] Clostridium botulinum (strain Alaska E43 / type E3) | CLOBA00370 | RNPH_CLOBA | Ribonuclease PH |
| [B] Clostridium botulinum (strain Eklund 17B / type B) | CLOBB00386 | RNPH_CLOBB | Ribonuclease PH |
| [B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) | CLOCE01293 | RNPH_CLOCE | ribonuclease PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: cth:Cthe_0188 ribonuclease PH |
| [B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) | CLOK503301 | RNPH_CLOK5 | RpH |
| [B] Clostridium perfringens | CLOPE02254 | RNPH_CLOPE | Ribonuclease PH |
| [B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237) | CLOP102449 | RNPH_CLOP1 | ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Clostridium perfringens (strain SM101) | CLOPS02154 | RNPH_CLOPS | ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237) | CLOTH00183 | A3DBV0 | Ribonuclease PH |
| [B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) | HELMI00288 | B0TFI3 | Ribonuclease ph |
| [B] Desulforudis audaxviator (strain MP104C) | DESAP01425 | RNPH_DESAP | Ribonuclease PH |
| [B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) | CARHZ00311 | RNPH_CARHZ | identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Desulfitobacterium hafniense (strain Y51) | DESHY03187 | Q24SI1 | hypothetical protein similarity to COG0689 RNase PH(Evalue: 1E-82) |
| [B] Desulfotomaculum reducens (strain MI-1) | DESRM02580 | RNPH_DESRM | Ribonuclease PH |
| [B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) | PELTS00782 | A5D466 | RNase PH |
| [B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) | CALS800901 | RNPH_CALS8 | Ribonuclease PH |
| [B] Syntrophomonas wolfei subsp. wolfei (strain Goettingen) | SYNWW00420 | RNPH_SYNWW | TRNA nucleotidyltransferase |
| [B] Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) | HALOH01508 | B8CYB9 | Ribonuclease PH |
| [B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) | NATTJ01878 | B2A6I8 | RNAse PH |
| [B] Moorella thermoacetica (strain ATCC 39073) | MOOTA00502 | RNPH_MOOTA | ribonuclease PH |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP301602 | RNPH_THEP3 | Ribonuclease PH |
| [B] Thermoanaerobacter sp. (strain X514) | THEPX00521 | RNPH_THEPX | Ribonuclease PH |
| [B] Thermoanaerobacter tengcongensis | THETN00557 | RNPH_THETN | Best Blastp hit = gi|13591380|gb|AAK29744.1| (AY028475) ribonuclease PH-like protein [Mannheimia haemolytica], score 295, E-value 5.00E-79 RNase PH |
| [B] Rhodopirellula baltica | RHOBA03169 | RNPH_RHOBA | PMID: 1624460 best DB hits: BLAST: swissprot:P28619; RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA; E=2e-60 pir:A44914; tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus; E=4e-60 pir:D82350; ribonuclease PH VC0210 [imported] - Vibrio cholerae; E=7e-60 COG: BS_rph; COG0689 RNase PH; E=2e-61 PA4740; COG1185 Polyribonucleotide nucleotidyltransferase; E=0.001 PFAM: PF01138; 3' exoribonuclease family; E=4.3e-59 ribonuclease PH |
| [B] Caulobacter crescentus | CAUCR00151 | RNPH_CAUCR | Ribonuclease PH |
| [B] Caulobacter sp. (strain K31) | CAUSK00166 | RNPH_CAUSK | Ribonuclease PH |
| [B] Phenylobacterium zucineum (strain HLK1) | PHEZH03456 | RNPH_PHEZH | Ribonuclease PH |
| [B] Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) | BEII900766 | RNPH_BEII9 | Ribonuclease PH |
| [B] Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) | METSB02102 | RNPH_METSB | Ribonuclease PH |
| [B] Bradyrhizobium japonicum | BRAJA00672 | RNPH_BRAJA | Ribonuclease PH |
| [B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB00176 | RNPH_BRASB | RNase PH |
| [B] Bradyrhizobium sp. (strain ORS278) | BRASO00166 | RNPH_BRASO | RNase PH |
| [B] Nitrobacter hamburgensis (strain X14 / DSM 10229) | NITHX00148 | RNPH_NITHX | ribonuclease PH |
| [B] Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | NITWN00189 | RNPH_NITWN | ribonuclease PH |
| [B] Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) | OLICO00407 | RNPH_OLICO | Ribonuclease PH |
| [B] Rhodopseudomonas palustris | RHOPA00329 | RNPH_RHOPA | observed by proteomics Citation: Proteomics from VerBerkmoes et al. (2003) unpublished ribonuclease PH |
| [B] Rhodopseudomonas palustris (strain BisA53) | RHOP500350 | Q07US2 | ribonuclease PH KEGG: rpb:RPB_0425 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Rhodopseudomonas palustris (strain BisB18) | RHOPB00321 | RNPH_RHOPB | ribonuclease PH |
| [B] Rhodopseudomonas palustris (strain BisB5) | RHOPS00390 | RNPH_RHOPS | ribonuclease PH |
| [B] Rhodopseudomonas palustris (strain HaA2) | RHOP200424 | RNPH_RHOP2 | ribonuclease PH |
| [B] Rhodopseudomonas palustris (strain TIE-1) | RHOPT00330 | RNPH_RHOPT | Ribonuclease PH |
| [B] Brucella abortus | BRUAB00157 | RNPH_BRUAB | similar to BR0173, ribonuclease PH Rph, ribonuclease PH |
| [B] Brucella abortus (strain 2308) | BRUA200170 | RNPH_BRUA2 | 3' exoribonuclease:Ribonuclease PH |
| [B] Brucella abortus (strain S19) | BRUA100154 | RNPH_BRUA1 | Ribonuclease PH |
| [B] Brucella canis (strain ATCC 23365 / NCTC 10854) | BRUC200169 | RNPH_BRUC2 | Ribonuclease PH |
| [B] Brucella melitensis | BRUME01763 | RNPH_BRUME | Ribonuclease PH |
| [B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) | BRUO200152 | RNPH_BRUO2 | Ribonuclease PH |
| [B] Brucella suis | BRUSU00168 | RNPH_BRUSU | similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH |
| [B] Brucella suis (strain ATCC 23445 / NCTC 10510) | BRUSI00162 | RNPH_BRUSI | ribonuclease PH GO_function: tRNA-specific ribonuclease activity [GO ID 0004549]; GO_process: tRNA processing [GO ID 0008033] |
| [B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) | OCHA400181 | RNPH_OCHA4 | Ribonuclease PH |
| [B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) | METC400397 | RNPH_METC4 | ribonuclease PH KEGG: mex:Mext_0401 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 |
| [B] Methylobacterium extorquens (strain PA1) | METEP00390 | RNPH_METEP | Ribonuclease PH |
| [B] Methylobacterium nodulans (strain ORS2060 / LMG 21967) | METNO04468 | RNPH_METNO | Ribonuclease PH |
| [B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) | METPB00442 | RNPH_METPB | Ribonuclease PH |
| [B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) | METRJ02885 | RNPH_METRJ | Ribonuclease PH |
| [B] Methylobacterium sp. (strain 4-46) | METS403977 | RNPH_METS4 | Ribonuclease PH |
| [B] Mesorhizobium sp. (strain BNC1) | MESSB03976 | RNPH_MESSB | ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease KEGG: bmb:BruAb1_0169 Rph, ribonuclease PH |
| [B] Rhizobium loti | RHILO03548 | RNPH_RHILO | ribonuclease PH |
| [B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) | PARL103498 | RNPH_PARL1 | Ribonuclease PH |
| [B] Agrobacterium radiobacter (strain K84 / ATCC BAA-868) | AGRRK00458 | RNPH_AGRRK | Ribonuclease PH |
| [B] Agrobacterium tumefaciens (strain C58 / ATCC 33970) | AGRT500314 | RNPH_AGRT5 | Ribonuclease PH |
| [B] Rhizobium etli (strain CFN 42 / ATCC 51251) | RHIEC00348 | RNPH_RHIEC | ribonuclease PH protein similar to rph (SMc01144) [Sinorhizobium meliloti] and rph (Atu0327) [Agrobacterium tumefaciens str. C58] Similar to entrez-protein:Q92SK2 Putative location:bacterial cytoplasm Psort-Score: 0.4450; go_function: transferase activity [goid 0016740]; go_function: nucleotidyltransferase activity [goid 0016779]; go_function: RNA binding [goid 0003723]; go_function: 3`-5` exoribonuclease activity [goid 0000175]; go_function: tRNA binding [goid 0000049]; go_function: tRNA-specific ribonuclease activity [goid 0004549]; go_function: tRNA nucleotidyltransferase activity [goid 0009022]; go_process: RNA processing [goid 0006396]; go_process: tRNA processing [goid 0008033] |
| [B] Rhizobium etli (strain CIAT 652) | RHIE600393 | RNPH_RHIE6 | Ribonuclease PH protein |
| [B] Rhizobium leguminosarum bv. trifolii (strain WSM2304) | RHILW00006 | RNPH_RHILW | Ribonuclease PH |
| [B] Rhizobium leguminosarum bv. viciae (strain 3841) | RHIL300382 | RNPH_RHIL3 | putative ribonuclease similarity:fasta; with=UniProt:RNPH_CAUCR (EMBL:AE005689); Caulobacter crescentus.; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 64.017; 239 aa overlap; query 1-239; subject 1-238 similarity:fasta; with=UniProt:RNPH_AGRT5 (EMBL:AE007971); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 87.764; 237 aa overlap; query 1-237; subject 1-237 |
| [B] Rhizobium meliloti | RHIME00372 | RNPH_RHIME | Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE RIBONUCLEASE PH PROTEIN |
| [B] Sinorhizobium medicae (strain WSM419) | SINMW00010 | RNPH_SINMW | Ribonuclease PH |
| [B] Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) | AZOC504278 | RNPH_AZOC5 | Ribonuclease PH |
| [B] Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) | XANP202463 | RNPH_XANP2 | Ribonuclease PH |
| [B] Hyphomonas neptunium (strain ATCC 15444) | HYPNA03248 | Q0BX05 | Ribonuclease PH |
| [B] Maricaulis maris (strain MCS10) | MARMM02988 | RNPH_MARMM | Ribonuclease PH |
| [B] Dinoroseobacter shibae (strain DFL 12) | DINSH03426 | RNPH_DINSH | Ribonuclease PH |
| [B] Paracoccus denitrificans (strain Pd 1222) | PARDP00010 | A1AXY3 | ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) | RHOS402831 | Q3IYI2 | Citation: Characterization of Escherichia coli RNase PH. J Biol Chem. 1992 Aug 25;267(24):17153-8. ribonuclease PH |
| [B] Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) | RHOS502540 | RNPH_RHOS5 | Ribonuclease PH |
| [B] Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) | RHOS102845 | RNPH_RHOS1 | ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Rhodobacter sphaeroides (strain KD131 / KCTC 12085) | RHOSK02597 | RNPH_RHOSK | Ribonuclease PH |
| [B] Roseobacter denitrificans (strain ATCC 33942 / OCh 114) | ROSDO00399 | RNPH_ROSDO | ribonuclease PH |
| [B] Silicibacter pomeroyi | SILPO00008 | RNPH_SILPO | identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Silicibacter sp. (strain TM1040) | SILST02862 | RNPH_SILST | ribonuclease PH KEGG: sil:SPO0008 ribonuclease PH, ev=1e-119, 90% identity TIGRFAM: ribonuclease PH: (1.5e-157) PFAM: 3' exoribonuclease: (5.9e-52) |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ01628 | A5FZ37 | Ribonuclease PH |
| [B] Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) | GLUDA01332 | A9HF53 | Putative Ribonuclease PH |
| [B] Gluconobacter oxydans | GLUOX01231 | Q5FRF3 | Ribonuclease PH |
| [B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) | GRABC00025 | Q0BW79 | Ribonuclease PH |
| [B] Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) | MAGMM04442 | BAE53302.1 | RNase PH |
| [B] Rhodospirillum centenum (strain ATCC 51521 / SW) | RHOCS02875 | B6IVK4 | Ribonuclease PH |
| [B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) | RHORT03627 | RNPH_RHORT | Ribonuclease PH |
| [B] Orientia tsutsugamushi (strain Boryong) | ORITB00211 | A5CCD0 | TRNA nucleotidyltransferase |
| [B] Orientia tsutsugamushi (strain Ikeda) | ORITI01099 | B3CTZ6 | Ribonuclease PH |
| [B] Rickettsia akari (strain Hartford) | RICAH00903 | RNPH_RICAH | Ribonuclease PH |
| [B] Rickettsia bellii (strain OSU 85-389) | RICB800626 | RNPH_RICB8 | Ribonuclease PH |
| [B] Rickettsia bellii (strain RML369-C) | RICBR00591 | RNPH_RICBR | Ribonuclease PH |
| [B] Rickettsia canadensis (strain McKiel) | RICCK00312 | RNPH_RICCK | Ribonuclease PH |
| [B] Rickettsia felis | RICFE00381 | RNPH_RICFE | Ribonuclease PH |
| [B] Rickettsia massiliae (strain Mtu5) | RICM500694 | A8F2B7 | Ribonuclease PH |
| [B] Rickettsia prowazekii | RICPR00596 | RNPH_RICPR | RIBONUCLEASE PH (rph) |
| [B] Rickettsia rickettsii (strain Iowa) | RICRO01001 | RNPH_RICRO | ribonuclease PH |
| [B] Rickettsia rickettsii (strain Sheila Smith) | RICRS00962 | RNPH_RICRS | Ribonuclease PH |
| [B] Rickettsia conorii | RICCN00975 | RNPH_RICCN | Ribonuclease PH |
| [B] Erythrobacter litoralis (strain HTCC2594) | ERYLH01196 | RNPH_ERYLH | RNase PH COG0689 RNase PH |
| [B] Novosphingobium aromaticivorans (strain DSM 12444) | NOVAD02040 | Q2G6M3 | Ribonuclease PH |
| [B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) | SPHWW00562 | RNPH_SPHWW | Ribonuclease PH |
| [B] Sphingopyxis alaskensis | SPHAL00249 | RNPH_SPHAL | ribonuclease PH |
| [B] Zymomonas mobilis | ZYMMO00014 | RNPH_ZYMMO | COG0689 RNase PH |
| [B] Bordetella avium (strain 197N) | BORA101919 | Q2L0C2 | ribonuclease PH |
| [B] Bordetella bronchiseptica | BORBR02945 | RNPH_BORBR | ortholog of Bordetella pertussis (BX470248) BP1588 ribonuclease PH |
| [B] Bordetella parapertussis | BORPA02955 | RNPH_BORPA | ortholog of Bordetella pertussis (BX470248) BP1588 ribonuclease PH |
| [B] Bordetella pertussis | BORPE01449 | RNPH_BORPE | Similar to Escherichia coli ribonuclease PH Rph or B3643 SW:RNPH_ECOLI (P03842) (238 aa) fasta scores: E(): 9.5e-53, 62.55% id in 235 aa, and to Xylella fastidiosa ribonuclease PH Xf1505 TR:Q9PD74 (EMBL:AE003980) (241 aa) fasta scores: E(): 4.1e-56, 66.66% id in 237 aa ribonuclease PH |
| [B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD02211 | A9ILQ1 | Ribonuclease PH |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA400855 | RNPH_BURA4 | Ribonuclease PH |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA00512 | RNPH_BURCA | Ribonuclease PH |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH00989 | RNPH_BURCH | ribonuclease PH KEGG: bcn:Bcen_0518 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC00949 | RNPH_BURCC | Ribonuclease PH |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM00852 | RNPH_BURCM | ribonuclease PH KEGG: bpm:BURPS1710b_3051 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ02901 | RNPH_BURCJ | ribonuclease PH |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM101175 | RNPH_BURM1 | Ribonuclease PH |
| [B] Burkholderia sp. (strain 383) | BURS300918 | RNPH_BURS3 | Ribonuclease PH |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG00883 | RNPH_BURVG | Ribonuclease PH |
| [B] Burkholderia mallei | BURMA01719 | RNPH_BURMA | Ribonuclease PH |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM902488 | RNPH_BURM9 | Ribonuclease PH |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM701843 | RNPH_BURM7 | Ribonuclease PH |
| [B] Burkholderia mallei (strain SAVP1) | BURMS00762 | A1V1Q3 | Ribonuclease PH |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP800659 | RNPH_BURP8 | Ribonuclease PH |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP03003 | RNPH_BURPP | Ribonuclease PH |
| [B] Burkholderia pseudomallei | BURPS02574 | RNPH_BURPS | Similar to Ralstonia solanacearum ribonuclease PH Rph or rsc2159 or rs01443 SWALL:RNPH_RALSO (SWALL:Q8XXF5) (238 aa) fasta scores: E(): 7.2e-67, 72.45% id in 236 aa, and to Salmonella typhimurium, and Salmonella typhi ribonuclease PH Rph or stm3734 or sty4060 SWALL:RNPH_SALTY (SWALL:P26155) (238 aa) fasta scores: E(): 2.7e-57, 66.24% id in 237 aa ribonuclease PH |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP002958 | RNPH_BURP0 | Ribonuclease PH |
| [B] Burkholderia pseudomallei (strain 668) | BURP602907 | RNPH_BURP6 | Ribonuclease PH |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA01536 | RNPH_BURTA | ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL03415 | RNPH_BURXL | Ribonuclease PH |
| [B] Cupriavidus taiwanensis (strain R1 / LMG 19424) | CUPTR00921 | RNPH_CUPTR | RNase PH |
| [B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | RALEH00942 | RNPH_RALEH | Ribonuclease PH |
| [B] Ralstonia eutropha (strain JMP134) | RALEJ02449 | Q46YE4 | Ribonuclease PH |
| [B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) | RALME00843 | RNPH_RALME | ribonuclease PH |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ01071 | A4SXT2 | Ribonuclease PH |
| [B] Ralstonia pickettii (strain 12J) | RALPJ02186 | RNPH_RALPJ | Ribonuclease PH |
| [B] Ralstonia solanacearum | RALSO02144 | RNPH_RALSO | Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE RIBONUCLEASE PH (TRNA NUCLEOTIDYLTRANSFERASE) PROTEIN |
| [B] Acidovorax avenae subsp. citrulli (strain AAC00-1) | ACIAC03413 | A1TT42 | ribonuclease PH KEGG: pol:Bpro_1339 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Acidovorax sp. (strain JS42) | ACISJ00888 | A1W4I8 | ribonuclease PH KEGG: pol:Bpro_1339 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Diaphorobacter sp. (strain TPSY) | DIAST00844 | B9MEK0 | Ribonuclease PH |
| [B] Polaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ01315 | Q12DV3 | ribonuclease PH |
| [B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) | RHOFD01583 | Q21XZ4 | ribonuclease PH |
| [B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP00702 | B1Y0J9 | Ribonuclease PH |
| [B] Methylibium petroleiphilum (strain PM1) | METPP02657 | A2SJC0 | TRNA nucleotidyltransferase |
| [B] Herminiimonas arsenicoxydans | HERAR02014 | A4G6X6 | RNase PH |
| [B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) | JANMA01331 | A6SXM5 | Ribonuclease PH |
| [B] Thiobacillus denitrificans (strain ATCC 25259) | THIDA00476 | Q3SLI0 | ribonuclease PH |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK00043 | RNPH_METFK | ribonuclease PH |
| [B] Chromobacterium violaceum | CHRVO03839 | RNPH_CHRVO | identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0689 tRNA nucleotidyltransferase |
| [B] Laribacter hongkongensis (strain HLHK9) | LARHH02597 | RNPH_LARHH | RnpH |
| [B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | NEIG100866 | RNPH_NEIG1 | Best Blastp Hit: pir||A81866 tRNA nucleotidyltransferase (EC 2.7.7.56) - Neisseria meningitidis (group A strain Z2491) >gi|7380343|emb|CAB84930.1| (AL162756) ribonuclease PH [Neisseria meningitidis] COG0689 RNase PH putative ribonuclease PH |
| [B] Neisseria gonorrhoeae (strain NCCP11945) | NEIG200817 | RNPH_NEIG2 | Putative ribonuclease PH |
| [B] Neisseria meningitidis serogroup A | NEIMA01481 | RNPH_NEIMA | Ribonuclease PH |
| [B] Neisseria meningitidis serogroup B | NEIMB01377 | RNPH_NEIMB | Ribonuclease PH |
| [B] Neisseria meningitidis serogroup C (strain 053442) | NEIM001328 | RNPH_NEIM0 | ribonuclease PH Code: J; COG: COG0689 |
| [B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) | NEIMF01285 | RNPH_NEIMF | Ribonuclease PH |
| [B] Nitrosomonas europaea | NITEU00264 | RNPH_NITEU | 3' exoribonuclease family |
| [B] Nitrosomonas eutropha (strain C71) | NITEC00296 | RNPH_NITEC | ribonuclease PH KEGG: neu:NE0276 3' exoribonuclease family TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) | NITMU00062 | RNPH_NITMU | ribonuclease PH |
| [B] Azoarcus sp. (strain BH72) | AZOSB03951 | RNPH_AZOSB | ribonuclease PH Ribonuclease PH (EC 2.7.7.56) (tRNA nucleotidyltransferase). Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates. High confidence in function and specificity |
| [B] Azoarcus sp. (strain EbN1) | AZOSE01253 | RNPH_AZOSE | Ribonuclease PH |
| [B] Dechloromonas aromatica (strain RCB) | DECAR03798 | RNPH_DECAR | Ribonuclease PH |
| [B] Bdellovibrio bacteriovorus | BDEBA02470 | RNPH_BDEBA | InterPro: 3 exoribonuclease family hypothetical protein ribonuclease PH |
| [B] Desulfotalea psychrophila | DESPS01273 | RNPH_DESPS | probable ribonuclease PH |
| [B] Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) | GEOBB01188 | B5EHL3 | Ribonuclease PH |
| [B] Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) | GEOLS01984 | RNPH_GEOLS | Ribonuclease PH |
| [B] Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) | GEOMG01820 | RNPH_GEOMG | Ribonuclease PH |
| [B] Geobacter sulfurreducens | GEOSL01768 | RNPH_GEOSL | Ribonuclease PH |
| [B] Geobacter uraniumreducens (strain Rf4) | GEOUR02155 | RNPH_GEOUR | Ribonuclease PH |
| [B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) | PELCD02165 | Q3A2Y6 | Ribonuclease PH |
| [B] Pelobacter propionicus (strain DSM 2379) | PELPD02191 | A1ARE8 | ribonuclease PH KEGG: gme:Gmet_1876 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Anaeromyxobacter dehalogenans (strain 2CP-C) | ANADE03348 | RNPH_ANADE | ribonuclease PH |
| [B] Anaeromyxobacter sp. (strain Fw109-5) | ANADF03384 | RNPH_ANADF | Ribonuclease PH |
| [B] Anaeromyxobacter sp. (strain K) | ANASK03403 | RNPH_ANASK | Ribonuclease PH |
| [B] Myxococcus xanthus (strain DK 1622) | MYXXD01922 | RNPH_MYXXD | ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Sorangium cellulosum (strain So ce56) | SORC507941 | A9FGR1 | Ribonuclease PH |
| [B] Syntrophus aciditrophicus (strain SB) | SYNAS01578 | RNPH_SYNAS | ribonuclease PH |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) | ACIF202201 | B7J6B0 | Ribonuclease PH |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 53993) | ACIF501881 | B5ELL0 | Ribonuclease PH |
| [B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) | AERHH04063 | A0KQU6 | ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 |
| [B] Aeromonas salmonicida (strain A449) | AERS400077 | A4SHC8 | Ribonuclease PH |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD03992 | RNPH_ALTMD | RNase PH |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV00510 | RNPH_MARAV | ribonuclease PH KEGG: sde:Sde_3683 tRNA nucleotidyltransferase TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD203660 | RNPH_SACD2 | tRNA nucleotidyltransferase |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP300095 | RNPH_COLP3 | identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Idiomarina loihiensis | IDILO02396 | RNPH_IDILO | RNase PH |
| [B] Pseudoalteromonas atlantica (strain T6c / BAA-1087) | PSEA604238 | RNPH_PSEA6 | Ribonuclease PH |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT02712 | RNPH_PSEHT | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1644789; Product type e : enzyme RNase PH (tRNA nucleotidyltransferase) |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN03276 | RNPH_PSYIN | ribonuclease PH KEGG: eca:ECA0140 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM00318 | RNPH_SHEAM | tRNA nucleotidyltransferase KEGG: son:SO4256 ribonuclease PH |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB500359 | RNPH_SHEB5 | Ribonuclease PH |
| [B] Shewanella baltica (strain OS185) | SHEB800363 | RNPH_SHEB8 | Ribonuclease PH |
| [B] Shewanella baltica (strain OS195) | SHEB900380 | RNPH_SHEB9 | KEGG: shw:Sputw3181_0332 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 ribonuclease PH |
| [B] Shewanella baltica (strain OS223) | SHEB200380 | RNPH_SHEB2 | Ribonuclease PH |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO00315 | RNPH_SHEDO | Ribonuclease PH |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN03759 | RNPH_SHEFN | Ribonuclease PH |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH00420 | RNPH_SHEHH | Ribonuclease PH |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP03476 | RNPH_SHELP | ribonuclease PH KEGG: shm:Shewmr7_0352 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Shewanella oneidensis | SHEON03985 | RNPH_SHEON | Ribonuclease PH |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA03764 | RNPH_SHEPA | KEGG: slo:Shew_3488 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 ribonuclease PH |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW02080 | RNPH_SHEPW | Ribonuclease PH |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC00436 | RNPH_SHEPC | Ribonuclease PH |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH00378 | RNPH_SHESH | KEGG: slo:Shew_3488 ribonuclease PH tRNA nucleotidyltransferase |
| [B] Shewanella sp. (strain ANA-3) | SHESA03731 | RNPH_SHESA | ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease KEGG: son:SO4256 ribonuclease PH |
| [B] Shewanella sp. (strain MR-4) | SHESM03580 | RNPH_SHESM | Ribonuclease PH |
| [B] Shewanella sp. (strain MR-7) | SHESR00349 | RNPH_SHESR | Ribonuclease PH |
| [B] Shewanella sp. (strain W3-18-1) | SHESW00328 | RNPH_SHESW | ribonuclease PH KEGG: son:SO4256 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM04502 | RNPH_SHEWM | Ribonuclease PH |
| [B] Dichelobacter nodosus (strain VCS1703A) | DICNV00628 | RNPH_DICNV | Ribonuclease PH |
| [B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) | NITOC02314 | RNPH_NITOC | Ribonuclease PH |
| [B] Alkalilimnicola ehrlichei (strain MLHE-1) | ALHEH02424 | RNPH_ALHEH | Ribonuclease PH |
| [B] Halorhodospira halophila (strain DSM 244 / SL1) | HALHL00952 | RNPH_HALHL | Ribonuclease PH |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH02916 | RNPH_THISH | Ribonuclease PH |
| [B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK804951 | RNPH_CITK8 | Ribonuclease PH |
| [B] Enterobacter sakazakii (strain ATCC BAA-894) | ENTS803939 | A7MQA8 | Putative uncharacterized protein |
| [B] Enterobacter sp. (strain 638) | ENT3800096 | RNPH_ENT38 | Ribonuclease PH |
| [B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99) | ERWT900061 | RNPH_ERWT9 | Ribonuclease PH |
| [B] Escherichia coli (strain 55989 / EAEC) | ECO5503950 | B7L767 | Ribonuclease PH |
| [B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC00063 | RNPH_ECOLC | Ribonuclease PH |
| [B] Escherichia coli (strain K12) | ECOLI03522 | RNPH_ECOLI | Ribonuclease PH |
| [B] Escherichia coli (strain SE11) | ECOSE03906 | RNPH_ECOSE | Ribonuclease PH |
| [B] Escherichia coli (strain SMS-3-5 / SECEC) | ECOSM03802 | RNPH_ECOSM | Ribonuclease PH |
| [B] Escherichia coli (strain UTI89 / UPEC) | ECOUT04092 | Q1R4U9 | ribonuclease PH |
| [B] Escherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2703828 | RNPH_ECO27 | Ribonuclease PH |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2403907 | RNPH_ECO24 | Ribonuclease PH |
| [B] Escherichia coli O157:H7 | ECO5704316 | RNPH_ECO57 | Residues 1 to 223 of 238 are 99.10 pct identical to residues 1 to 223 of 228 from Escherichia coli K-12 Strain MG1655: B3643 RNase PH |
| [B] Escherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E04310 | RNPH_ECO5E | Ribonuclease PH |
| [B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU04037 | B7NEU7 | Ribonuclease PH |
| [B] Escherichia coli O1:K1 / APEC | ECOK103607 | RNPH_ECOK1 | ribonuclease PH |
| [B] Escherichia coli O45:K1 (strain S88 / ExPEC) | ECO4503859 | B7MFK4 | Ribonuclease PH |
| [B] Escherichia coli O6 | ECOL604330 | RNPH_ECOL6 | Ribonuclease PH |
| [B] Escherichia coli O6:K15:H31 (strain 536) | ECOL503684 | RNPH_ECOL5 | ribonuclease PH |
| [B] Escherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I03949 | B7NQ05 | Ribonuclease PH |
| [B] Escherichia coli O81 (strain ED1a) | ECO8104098 | B7N1U4 | Ribonuclease PH |
| [B] Escherichia coli O9:H4 (strain HS) | ECOHS03589 | RNPH_ECOHS | Ribonuclease PH |
| [B] Klebsiella pneumoniae (strain 342) | KLEP300109 | RNPH_KLEP3 | Ribonuclease PH |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP703926 | RNPH_KLEP7 | Ribonuclease PH |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT00136 | RNPH_ERWCT | Similar to Escherichia coli ribonuclease PH Rph or b3643 SWALL:RNPH_ECOLI (SWALL:P03842) (238 aa) fasta scores: E(): 8.2e-78, 85.71% id in 238 aa ribonuclease PH |
| [B] Photorhabdus luminescens (subsp. laumondii) | PHOLL04714 | RNPH_PHOLL | ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Proteus mirabilis (strain HI4320) | PROMH03117 | RNPH_PROMH | Ribonuclease PH |
| [B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR03736 | RNPH_SALAR | Putative uncharacterized protein |
| [B] Salmonella agona (strain SL483) | SALA403665 | RNPH_SALA4 | Ribonuclease PH |
| [B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 | SALCH03603 | RNPH_SALCH | IPR002381: Ribonuclease PH RNase PH |
| [B] Salmonella dublin (strain CT_02021853) | SALDC03730 | RNPH_SALDC | Ribonuclease PH |
| [B] Salmonella enteritidis PT4 (strain P125109) | SALEP03531 | RNPH_SALEP | RNase PH |
| [B] Salmonella gallinarum (strain 287/91 / NCTC 13346) | SALG203551 | RNPH_SALG2 | RNase PH |
| [B] Salmonella heidelberg (strain SL476) | SALHS03776 | RNPH_SALHS | Ribonuclease PH |
| [B] Salmonella newport (strain SL254) | SALNS03744 | RNPH_SALNS | Ribonuclease PH |
| [B] Salmonella paratyphi A (strain AKU_12601) | SALPK03489 | RNPH_SALPK | RNase PH |
| [B] Salmonella paratyphi-a | SALPA03337 | RNPH_SALPA | similar to Salmonella typhi CT18 RNase PH RNase PH |
| [B] Salmonella schwarzengrund (strain CVM19633) | SALSV03644 | RNPH_SALSV | Ribonuclease PH |
| [B] Salmonella typhi | SALTI03697 | RNPH_SALTI | Ribonuclease PH |
| [B] Salmonella typhimurium | SALTY03585 | RNPH_SALTY | ribonuclease PH (SW:RNPH_SALTY) RNase PH |
| [B] Serratia proteamaculans (strain 568) | SERP504817 | RNPH_SERP5 | Ribonuclease PH |
| [B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) | SHIB303164 | RNPH_SHIB3 | Ribonuclease PH |
| [B] Shigella boydii serotype 4 (strain Sb227) | SHIBS03024 | RNPH_SHIBS | Code: J; COG: COG0689 RNase PH |
| [B] Shigella dysenteriae serotype 1 (strain Sd197) | SHIDS03187 | RNPH_SHIDS | Code: J; COG: COG0689 RNase PH |
| [B] Shigella flexneri | SHIFL03329 | NP_709422.1 | Residues 9 to 246 of 246 are 99 pct identical to residues 1 to 238 of a 238 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290223.1 RNase PH |
| [B] Shigella flexneri serotype 5b (strain 8401) | SHIF803357 | RNPH_SHIF8 | RNase PH Code: J; COG: COG0689 |
| [B] Shigella sonnei (strain Ss046) | SHISS03123 | RNPH_SHISS | Code: J; COG: COG0689 RNase PH |
| [B] Sodalis glossinidius (strain morsitans) | SODGM02179 | RNPH_SODGM | ribonuclease PH |
| [B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) | YERE800055 | RNPH_YERE8 | Ribonuclease PH |
| [B] Yersinia pestis | YERPE00040 | RNPH_YERPE | Ribonuclease PH |
| [B] Yersinia pestis (biovar Antiqua strain Antiqua) | YERPA03302 | RNPH_YERPA | Ribonuclease PH |
| [B] Yersinia pestis (biovar Antiqua strain Nepal516) | YERPN03652 | RNPH_YERPN | Ribonuclease PH |
| [B] Yersinia pestis (strain Pestoides F) | YERPP03652 | RNPH_YERPP | Ribonuclease PH |
| [B] Yersinia pestis bv. Antiqua (strain Angola) | YERPG00040 | RNPH_YERPG | Ribonuclease PH |
| [B] Yersinia pseudotuberculosis | YERPS00041 | RNPH_YERPS | Ribonuclease PH |
| [B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) | YERP300052 | RNPH_YERP3 | Ribonuclease PH |
| [B] Yersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB00041 | RNPH_YERPB | Ribonuclease PH |
| [B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY04082 | RNPH_YERPY | Ribonuclease PH |
| [B] Coxiella burnetii | COXBU00284 | RNPH_COXBU | similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH |
| [B] Coxiella burnetii (strain CbuG_Q212) | COXB201482 | B6J205 | Ribonuclease PH |
| [B] Coxiella burnetii (strain Dugway 5J108-111) | COXBN01664 | RNPH_COXBN | Ribonuclease PH |
| [B] Coxiella burnetii (strain RSA 331 / Henzerling II) | COXBR00338 | RNPH_COXBR | Ribonuclease PH |
| [B] Legionella pneumophila (strain Corby) | LEGPC01444 | RNPH_LEGPC | Ribonuclease PH |
| [B] Legionella pneumophila (strain Lens) | LEGPL01982 | RNPH_LEGPL | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Legionella pneumophila (strain Paris) | LEGPA01985 | RNPH_LEGPA | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) |
| [B] Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152) | LEGPH01953 | RNPH_LEGPH | conserved gene ribonuclease PH |
| [B] Methylococcus capsulatus | METCA02837 | RNPH_METCA | identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) | ALCBS00205 | RNPH_ALCBS | Ribonuclease PH |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH05989 | RNPH_HAHCH | ribonuclease PH TIGRFAMsMatches:TIGR01966 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD03185 | Q1QSK8 | ribonuclease PH |
| [B] Marinomonas sp. (strain MWYL1) | MARMS04289 | RNPH_MARMS | Ribonuclease PH |
| [B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ00055 | RNPH_ACTPJ | Ribonuclease PH |
| [B] Actinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP200054 | RNPH_ACTP2 | Ribonuclease PH |
| [B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP700055 | RNPH_ACTP7 | Ribonuclease PH |
| [B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z) | ACTSZ00414 | RNPH_ACTSZ | Ribonuclease PH |
| [B] Haemophilus ducreyi | HAEDU00256 | RNPH_HAEDU | tRNA nucleotidyltransferase ribonuclease PH |
| [B] Haemophilus influenzae | HAEIN00267 | RNPH_HAEIN | Ribonuclease PH |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI800327 | RNPH_HAEI8 | RNase PH; tRNA nucleotidyltransferase; Similar to: HI0273, RNPH_HAEIN ribonuclease PH |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE00311 | RNPH_HAEIE | Ribonuclease PH |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG00668 | RNPH_HAEIG | Ribonuclease PH |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS01167 | RNPH_HAEPS | Ribonuclease PH |
| [B] Haemophilus somnus (strain 129PT) | HAES101295 | RNPH_HAES1 | Ribonuclease PH |
| [B] Haemophilus somnus (strain 2336) | HAES200319 | RNPH_HAES2 | Ribonuclease PH |
| [B] Mannheimia succiniciproducens (strain MBEL55E) | MANSM00252 | RNPH_MANSM | RNase PH Rph protein |
| [B] Pasteurella multocida | PASMU01876 | RNPH_PASMU | Ribonuclease PH |
| [B] Acinetobacter baumannii (strain AB0057) | ACIB500078 | RNPH_ACIB5 | Ribonuclease PH |
| [B] Acinetobacter baumannii (strain AB307-0294) | ACIB303392 | RNPH_ACIB3 | Ribonuclease PH |
| [B] Acinetobacter baumannii (strain ACICU) | ACIBC00063 | RNPH_ACIBC | RNase PH |
| [B] Acinetobacter baumannii (strain AYE) | ACIBY03525 | RNPH_ACIBY | Ribonuclease PH (RNase PH), tRNA nucleotidyltransferase |
| [B] Acinetobacter baumannii (strain SDF) | ACIBS00040 | RNPH_ACIBS | Ribonuclease PH (RNase PH), tRNA nucleotidyltransferase |
| [B] Acinetobacter sp. (strain ADP1) | ACIAD00047 | CAG67032.1 | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonuclease PH (RNase PH), tRNA nucleotidyltransferase |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA201843 | RNPH_PSYA2 | Ribonuclease PH |
| [B] Psychrobacter cryohalolentis (strain K5) | PSYCK02133 | RNPH_PSYCK | ribonuclease PH |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF02124 | RNPH_PSYWF | Ribonuclease PH |
| [B] Cellvibrio japonicus (strain Ueda107) | CELJU00200 | RNPH_CELJU | Ribonuclease PH |
| [B] Pseudomonas aeruginosa | PSEAE05321 | RNPH_PSEAE | Ribonuclease PH |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA805701 | RNPH_PSEA8 | Ribonuclease PH |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA705990 | RNPH_PSEA7 | Ribonuclease PH |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB05647 | RNPH_PSEAB | ribonuclease PH |
| [B] Pseudomonas entomophila (strain L48) | PSEE405044 | Q1I2T6 | ribonuclease PH (RNase PH), tRNA nucleotidyltransferase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF505963 | RNPH_PSEF5 | identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF05532 | RNPH_PSEPF | Ribonuclease PH |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY04327 | RNPH_PSEMY | Ribonuclease PH |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP105136 | RNPH_PSEP1 | Ribonuclease PH |
| [B] Pseudomonas putida (strain GB-1) | PSEPG05294 | RNPH_PSEPG | ribonuclease PH unknown EC_number=2.7.7.56 KEGG: pen:PSEEN5439 ribonuclease PH (RNase PH), tRNA nucleotidyltransferase TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 |
| [B] Pseudomonas putida (strain KT2440) | PSEPK05183 | RNPH_PSEPK | similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH |
| [B] Pseudomonas putida (strain W619) | PSEPW00179 | RNPH_PSEPW | Ribonuclease PH |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU500458 | RNPH_PSEU5 | Ribonuclease PH |
| [B] Pseudomonas syringae (pv. tomato) | PSESM00069 | RNPH_PSESM | similar to SP:P03842, GB:U07987, SP:P01871, PID:184726, and PID:468239; identified by sequence similarity; putative ribonuclease PH |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1400179 | Q48Q13 | identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU200211 | RNPH_PSEU2 | Ribonuclease PH |
| [B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017) | FRAP200431 | RNPH_FRAP2 | tRNA nucleotidyltransferase |
| [B] Francisella tularensis (subsp. tularensis) | FRATT00826 | RNPH_FRATT | Similar to P03842 Ribonuclease PH from Escherichia coli (238 aa). FASTA: opt: 997 Z-score: 1218.8 bits: 232.9 E(): 5.4e-60 Smith-Waterman score: 997; 65.665identity in 233 aa overlap. Ribonuclease PH |
| [B] Francisella tularensis subsp. holarctica (strain FTA) | FRATF00275 | RNPH_FRATF | Ribonuclease PH |
| [B] Francisella tularensis subsp. holarctica (strain LVS) | FRATH00317 | RNPH_FRATH | Ribonuclease PH |
| [B] Francisella tularensis subsp. holarctica (strain OSU18) | FRATO00264 | RNPH_FRATO | TRNA nucleotidyltransferase |
| [B] Francisella tularensis subsp. mediasiatica (strain FSC147) | FRATM00355 | RNPH_FRATM | Ribonuclease PH |
| [B] Francisella tularensis subsp. novicida (strain U112) | FRATN00379 | RNPH_FRATN | ribonuclease PH |
| [B] Francisella tularensis subsp. tularensis (strain WY96-3418) | FRATW01033 | RNPH_FRATW | Ribonuclease PH |
| [B] Mycobacteriophage FRAT1 | FRAT100824 | RNPH_FRAT1 | Ribonuclease PH Similar to P03842 Ribonuclease PH from Escherichia coli (238 aa). FASTA: opt: 997 Z-score: 1218.8 bits: 232.9 E(): 5.4e-60 Smith-Waterman score: 997; 65.665identity in 233 aa overlap. |
| [B] Aliivibrio salmonicida (strain LFI1238) | ALISL00152 | RNPH_ALISL | Ribonuclease PH |
| [B] Vibrio fischeri (strain MJ11) | VIBFM00108 | RNPH_VIBFM | Ribonuclease PH |
| [B] Photobacterium profundum | PHOPR00176 | RNPH_PHOPR | putative ribonuclease PH |
| [B] Vibrio cholerae | VIBCH00208 | A2PA45 | similar to SP:P03842; identified by sequence similarity; putative ribonuclease PH |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC302412 | A5F421 | Ribonuclease PH |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM00194 | C3LQH3 | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF100111 | RNPH_VIBF1 | ribonuclease PH |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB00531 | A7MSP2 | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA00177 | RNPH_VIBPA | similar to GB:AAF93386.1 (AE004111) percent identity 86 in 236 aa ribonuclease PH |
| [B] Vibrio splendidus (strain LGP32) | VIBSL00152 | RNPH_VIBSL | Ribonuclease PH |
| [B] Vibrio vulnificus | VIBVU00784 | RNPH_VIBVU | COG0689 RNase PH |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY00277 | RNPH_VIBVY | Ribonuclease PH |
| [B] Stenotrophomonas maltophilia (strain K279a) | STRMK03613 | RNPH_STRMK | Putative ribonuclease PH |
| [B] Stenotrophomonas maltophilia (strain R551-3) | STRM503251 | RNPH_STRM5 | Ribonuclease PH |
| [B] Xanthomonas axonopodis (pv. citri) | XANAC03298 | RNPH_XANAC | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease PH |
| [B] Xanthomonas campestris pv. campestris | XANCP03156 | RNPH_XANCP | Ribonuclease PH |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC800919 | RNPH_XANC8 | ribonuclease PH |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB00932 | RNPH_XANCB | Ribonuclease PH |
| [B] Xanthomonas campestris pv. vesicatoria (strain 85-10) | XANC503426 | RNPH_XANC5 | ribonuclease PH |
| [B] Xanthomonas oryzae (pv. oryzae) | XANOR01027 | Q5H3S4 | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease PH |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM00949 | RNPH_XANOM | Ribonuclease PH Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Xanthomonas oryzae pv. oryzae (strain PXO99A) | XANOP03589 | RNPH_XANOP | Ribonuclease PH |
| [B] Xylella fastidiosa | XYLFA01498 | RNPH_XYLFA | similar to SP|P03842 (percent identity: 63 %/query alignment coverage: 97.9 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder ribonuclease PH |
| [B] Xylella fastidiosa (strain M12) | XYLFM00742 | RNPH_XYLFM | tRNA nucleotidyltransferase |
| [B] Xylella fastidiosa (strain M23) | XYLF200720 | RNPH_XYLF2 | Ribonuclease PH |
| [B] Xylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT00674 | RNPH_XYLFT | Ribonuclease PH |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM00050 | A0L3N7 | ribonuclease PH KEGG: bpm:BURPS1710b_3051 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease |
| [B] Opitutus terrae (strain DSM 11246 / PB90-1) | OPITP04174 | B1ZNZ4 | Ribonuclease PH |
| [B] Akkermansia muciniphila (strain ATCC BAA-835) | AKKM800387 | B2UNC2 | Ribonuclease PH |