List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 9445

FG-GAP repeat protein
This group has 20 members: 20 [B]acteria
Fingerprint: WRIDLGR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)CLAMS00924  UniProtKB/TrEMBL B0RFL2  Putative secreted glycosyl hydrolase precursor
[B] Arthrobacter aurescens (strain TC1)ARTAT03278  UniProtKB/TrEMBL A1RA67  FG-GAP repeat domain protein
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA03365  UniProtKB/TrEMBL B8HH79  FG-GAP repeat protein
[B] Arthrobacter sp. (strain FB24)ARTS203648  UniProtKB/TrEMBL A0K184  FG-GAP repeat protein PFAM: FG-GAP repeat protein KEGG: bsu:BG12858 similar to hypothetical proteins from B. subtilis
[B] Phytoplasma sp. (strain STRAWB1)STRAW01857  UniProtKB/TrEMBL Q82M03  Putative secreted glycosyl hydrolase
[B] Streptomyces coelicolorSTRCO06498  UniProtKB/TrEMBL O86724  SC5C7.27, possible secreted glycosyl hydrolase len: 631 aa; similar to two hypothetical proteins from B. subtilis TR:O31526 (EMBL:Z99107) yesW (620 aa), fasta scores; opt: 2404 z-score: 2009.8 E(): 0, 57.7% identity in 620 aa overlap and TR:O31527 (EMBL:Z99107) yesX (612 aa), fasta scores; opt: 1856 z-score: 1984.4 E(): 0, 54.4% identity in 599 aa overlap. Contains possible N-terminal signal sequence. Similar to TR:Q9AF09 (EMBL:AY026755) rhamnogalacturonan lyase from Pseudomonas cellulosa (881 aa) fasta scores; opt: 2392, Z-score: 2482.1, 59.091% identity (61.043% ungapped) in 594 aa overlap. putative secreted glycosyl hydrolase
[B] Bacteroides thetaiotaomicronBACTN04129  UniProtKB/TrEMBL Q8A046  Putative uncharacterized protein
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV800147  UniProtKB/TrEMBL A6KWR6  Polysaccharide lyase family 11, candidate rhamnogalacturonan lyase
[B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)FLAJ104191  UniProtKB/TrEMBL A5FC35  FG-GAP repeat protein
[B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)HERA203429  UniProtKB/TrEMBL A9B3W2  Cellulose-binding family II precursor
[B] Bacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD01281  UniProtKB/TrEMBL Q65KY4  putative polysaccharide lyase family 11 protein
[B] Bacillus subtilisBACSU00704  UniProtKB/Swiss-Prot YESW_BACSU  YesW protein
[B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320)ANATD01760  UniProtKB/TrEMBL B9MKT3  Cellulose 1,4-beta-cellobiosidase
[B] Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)CLOCE00719  UniProtKB/TrEMBL B8I7W0  cellulosome protein dockerin type I PFAM: cellulosome protein dockerin type I; FG-GAP repeat protein; KEGG: bld:BLi01376 YesW
[B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH00237  UniProtKB/TrEMBL A3DC06  Carbohydrate binding family 6 precursor
[B] Sorangium cellulosum (strain So ce56)SORC503031  UniProtKB/TrEMBL A9GFU2  Putative uncharacterized protein
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD201640  UniProtKB/TrEMBL Q21K69  Pseudouridine synthase, Rsu
[B] Cellvibrio japonicus (strain Ueda107)CELJU03451  UniProtKB/TrEMBL B3PGW4  Rhamnogalacturonan lyase, rgl11A
[B] Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)THEP101652  UniProtKB/TrEMBL A5INB0  FG-GAP repeat protein precursor
[B] Opitutus terrae (strain DSM 11246 / PB90-1)OPITP01330  UniProtKB/TrEMBL B1ZRE1  YesW precursor