List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 7700

zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein KEGG: mmc:Mmcs_0308 alcohol dehydrogenase
This group has 14 members: 14 [B]acteria
Fingerprint: WMIDDAP

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Mycobacterium sp. (strain JLS)MYCSJ00299  UniProtKB/TrEMBL A3PT85  Alcohol dehydrogenase, zinc-binding domain protein PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein KEGG: mmc:Mmcs_0308 alcohol dehydrogenase, zinc-binding protein
[B] Mycobacterium sp. (strain KMS)MYCSK00315  UniProtKB/TrEMBL A1U9M7  Alcohol dehydrogenase, zinc-binding domain protein PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein KEGG: mmc:Mmcs_0308 alcohol dehydrogenase, zinc-binding protein
[B] Streptomyces coelicolorSTRCO06755  UniProtKB/Swiss-Prot TDH_STRCO  SC1A2.08, tdh, threonine 3-dehydrogenase (EC 1.1.1.103), len: 342 aa. Highly similar to many dehydrogenases involved in L-threonine catabolism e.g. Escherichia coli SW:TDH_ECOLI(EMBL:X06690) threonine 3-dehydrogenase (EC 1.1.1.103) (341 aa), fasta scores opt: 1464 z-score: 1579.9 E(): 0 60.5% identity in 342 aa overlap. Contains a Prosite hit to PS00059 Zinc-containing alcohol dehydrogenases signature and a Pfam match to entry PF00107 adh_zinc, Zinc-binding dehydrogenases. threonine 3-dehydrogenase.
[B] Burkholderia vietnamiensis (strain G4 / LMG 22486)BURVG03669  UniProtKB/Swiss-Prot TDH_BURVG  L-threonine 3-dehydrogenase
[B] Burkholderia mallei (strain NCTC 10229)BURM904553  UniProtKB/Swiss-Prot TDH_BURM9  L-threonine 3-dehydrogenase
[B] Burkholderia pseudomallei (strain 668)BURP603950  UniProtKB/Swiss-Prot TDH_BURP6  L-threonine 3-dehydrogenase
[B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)BURTA03211  UniProtKB/Swiss-Prot TDH_BURTA  L-threonine 3-dehydrogenase identified by match to protein family HMM PF00107; match to protein family HMM TIGR00692
[B] Klebsiella pneumoniae (strain 342)KLEP300134  UniProtKB/Swiss-Prot TDH_KLEP3  L-threonine 3-dehydrogenase
[B] Legionella pneumophila (strain Lens)LEGPL00737  UniProtKB/Swiss-Prot TDH_LEGPL  threonine dehydrogenase
[B] Francisella philomiragia subsp. philomiragia (strain ATCC 25017)FRAP200199  UniProtKB/Swiss-Prot TDH_FRAP2  L-threonine 3-dehydrogenase
[B] Francisella tularensis (subsp. tularensis)FRATT00686  UniProtKB/Swiss-Prot TDH_FRATT  Similar to TDH_SHEON (Q8E8J1) L-threonine 3-dehydrogenase from Shewanella oneidensis (341 aa). FASTA: opt: 1660 Z-score: 1936.6 E(): 5.6e-100 Smith-Waterman score: 1660; 66.762 identity in 349 aa overlap. L-threonine 3-dehydrogenase
[B] Francisella tularensis subsp. mediasiatica (strain FSC147)FRATM01070  UniProtKB/Swiss-Prot TDH_FRATM  L-threonine 3-dehydrogenase
[B] Francisella tularensis subsp. novicida (strain U112)FRATN00607  UniProtKB/Swiss-Prot TDH_FRATN  L-threonine 3-dehydrogenase
[B] Mycobacteriophage FRAT1FRAT100684  UniProtKB/Swiss-Prot TDH_FRAT1  L-threonine 3-dehydrogenase Similar to TDH_SHEON (Q8E8J1) L-threonine 3-dehydrogenase from Shewanella oneidensis (341 aa). FASTA: opt: 1660 Z-score: 1936.6 E(): 5.6e-100 Smith-Waterman score: 1660; 66.762 identity in 349 aa overlap.