List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 387687

Glycoside hydrolase
This group has 9 members: 9 [B]acteria
Fingerprint: EYTVSFW

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacillus haloduransBACHD01846  UniProtKB/TrEMBL Q9KBP7  BH1878 unknown conserved protein
[B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)SACD203296  UniProtKB/TrEMBL Q21FF7  Beta-xylosidase-like
[B] Shewanella baltica (strain OS223)SHEB202092  UniProtKB/TrEMBL B8EEQ5  Glycoside hydrolase family protein
[B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)SHEPC02009  UniProtKB/TrEMBL A4Y735  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain ANA-3)SHESA02064  UniProtKB/TrEMBL A0KWZ7  beta-xylosidase-like protein KEGG: sde:Sde_3317 beta-xylosidase-like
[B] Shewanella sp. (strain MR-4)SHESM01985  UniProtKB/TrEMBL Q0HIP5  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain MR-7)SHESR01952  UniProtKB/TrEMBL Q0HV90  Glycoside hydrolase, family 43 precursor
[B] Shewanella sp. (strain W3-18-1)SHESW01921  UniProtKB/TrEMBL A1RJF5  glycoside hydrolase, family 43 PFAM: glycoside hydrolase, family 43 KEGG: she:Shewmr4_1999 glycoside hydrolase, family 43
[B] Cellvibrio japonicus (strain Ueda107)CELJU00768  UniProtKB/TrEMBL B3PKP2  Beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E