List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 224318

Glycoside hydrolase family 2
This group has 5 members: 5 [B]acteria
Fingerprint: WERVFRI

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacteroides fragilisBACFR01734  UniProtKB/TrEMBL Q84ID1  similar to gp:AE016944_7 [Bacteroides thetaiotaomicron VPI-5482], percent identity 40 in 946 aa, BLASTP E(): 0.0 putative beta-galactosidase
[B] Bacteroides thetaiotaomicronBACTN04105  UniProtKB/TrEMBL Q8A070  Beta-glucuronidase
[B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)BACV800175  UniProtKB/TrEMBL A6KWU5  Glycoside hydrolase family 2, candidate beta- glycosidase
[B] Roseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS03153  UniProtKB/TrEMBL A7NP03  glycoside hydrolase family 2 sugar binding PFAM: glycoside hydrolase family 2 sugar binding KEGG: rrs:RoseRS_0991 glycoside hydrolase family 2, sugar binding
[B] Roseiflexus sp. (strain RS-1)ROSS100948  UniProtKB/TrEMBL A5URZ7  Glycoside hydrolase family 2, sugar binding