List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 195862
Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding
This group has 6 members: 6 [B]acteria
Fingerprint: LIHNTAC
| [B] Chlorobium tepidum | CHLTE01780 | AROE_CHLTE | Shikimate dehydrogenase |
| [B] Chlorobium limicola (strain DSM 245 / NBRC 103803) | CHLL201715 | AROE_CHLL2 | Shikimate 5-dehydrogenase |
| [B] Chlorobium phaeobacteroides (strain DSM 266) | CHLPD00669 | AROE_CHLPD | shikimate 5-dehydrogenase TIGRFAM: shikimate 5-dehydrogenase PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein KEGG: cte:CT1809 shikimate 5-dehydrogenase |
| [B] Pelodictyon luteolum (strain DSM 273) | PELLD00479 | Q3B5L0 | shikimate 5-dehydrogenase |
| [B] Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) | PELPB01894 | AROE_PELPB | Shikimate 5-dehydrogenase |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM05887 | Q0B315 | Shikimate dehydrogenase PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein KEGG: pae:PA0244 putative shikimate 5-dehydrogenase |