List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 48103
glycogen synthase
This group has 8 members: 1 [E]ukaryota 7 [B]acteria
Fingerprint: VMLYEIY
| [E] Ostreococcus lucimarinus | OSTLU06455 | A4S8C2 | predicted protein |
| [B] Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.) | PARUW01592 | GLGA_PARUW | similar to starch synthase, precursor, glgA putative starch synthase, precursor, glgA |
| [B] Cyanothece (strain ATCC 51142) | CYAA503350 | B1WYY0 | Glycogen synthase |
| [B] Microcystis aeruginosa (strain NIES-843) | MICAN04311 | B0JUK2 | Glycogen synthase |
| [B] Anabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT02577 | GLGA1_ANAVT | Glycogen/starch synthases, ADP-glucose type |
| [B] Anabaena sp. (strain PCC 7120) | ANASP00029 | GLGA2_ANASP | Probable glycogen synthase 2 |
| [B] Methylococcus capsulatus | METCA02445 | YP_115011.1 | identified by similarity to SP:P39125; match to protein family HMM PF00534; match to protein family HMM TIGR02095 glycogen synthase, putative |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM01430 | A0L7T3 | glycogen/starch synthases, ADP-glucose type KEGG: ava:Ava_2631 glycogen synthase TIGRFAM: glycogen/starch synthases, ADP-glucose type PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein |