List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 3873

identified by match to protein family
This group has 13 members: 13 [B]acteria
Fingerprint: VFNHIGY

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)HERA203044  UniProtKB/TrEMBL A9B4Y8  Alpha amylase catalytic region
[B] Synechococcus sp. (strain CC9311)SYNS300550  UniProtKB/TrEMBL Q0ICN2  Glycoside hydrolase family protein
[B] Deinococcus geothermalis (strain DSM 11300)DEIGD00605  UniProtKB/TrEMBL Q1J0S1  alpha amylase, catalytic region PFAM: alpha amylase, catalytic region: (3.5e-93) SMART: Alpha amylase, catalytic subdomain: (1.1e-106) KEGG: dra:DR1141 glycosyl hydrolase, family 13, ev=0.0, 72% identity
[B] Deinococcus radioduransDEIRA01115  UniProtKB/TrEMBL Q9RV88  Glycosyl hydrolase, family 13
[B] Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS201648  UniProtKB/TrEMBL B1YHH2  Alpha amylase catalytic region
[B] Clostridium difficile (strain 630)CLOD602217  UniProtKB/TrEMBL Q185X6  cyclomaltodextrinase (maltogenic alpha-amylase)
[B] Clostridium perfringensCLOPE00805  UniProtKB/TrEMBL B1RHX8  Cyclomaltodextrinase
[B] Clostridium perfringens (strain ATCC 13124 / NCTC 8237)CLOP100776  UniProtKB/TrEMBL Q0TSY7  glycosyl hydrolase, family 13 identified by match to protein family HMM PF00128; match to protein family HMM PF02903
[B] Clostridium perfringens (strain SM101)CLOPS00755  UniProtKB/TrEMBL Q0SUU3  cymH protein identified by match to protein family HMM PF00128; match to protein family HMM PF02903
[B] Moorella thermoacetica (strain ATCC 39073)MOOTA01801  UniProtKB/TrEMBL Q2RHD3  Alpha amylase, catalytic region
[B] Lactobacillus plantarumLACPL02276  UniProtKB/TrEMBL Q88TZ8  glucan 1,4-alpha-maltohydrolase
[B] Streptococcus pneumoniae (strain Hungary19A-6)STRPI01154  UniProtKB/TrEMBL B1IBV7  Neopullulanase
[B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)YERE803000  UniProtKB/TrEMBL A1JNT9  Putative maltodextrin glucosidase