List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 210564

Serine hydroxymethyltransferase
This group has 8 members: 5 [E]ukaryota 3 [B]acteria
Fingerprint: GGNEVID

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Lottia giganteaLOTGI07918   149590  jgi|Lotgi1|149590|fgenesh2_kg.C_sca_11000056
[E] Drosophila pseudoobscuraDROPS07589   EAL31909  
[E] Ostreococcus lucimarinusOSTLU00776  UniProtKB/TrEMBL A4RTX6  predicted protein go_function: glycine hydroxymethyltransferase activity; go_process: glycine metabolism; L-serine metabolism
[E] Oryza sativaORYSA25623   BAF29659.1  Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) The start codon is not identified. contains InterPro domain(s): IPR001085 has GO asignment(s): GO:0004372, GO:0006544, GO:0006563 similar to O23254 supported by AK101088
[E] Sorghum bicolorSORBI14159   4893065  jgi|Sorbi1|4893065|estExt_Genewise1Plus.C_chr_85992
[B] Bradyrhizobium japonicumBRAJA05855  UniProtKB/TrEMBL Q89HS7  Serine hydroxymethyltransferase
[B] Rhizobium lotiRHILO04757  UniProtKB/Swiss-Prot GLYA2_RHILO  serine hydroxymethyltransferase
[B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL100608  UniProtKB/TrEMBL A7HQP8  Serine hydroxymethyltransferase