List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 33611

chitinase B
This group has 10 members: 10 [B]acteria
Fingerprint: TITNNEK

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bacillus clausii (strain KSM-K16)BACSK00641  UniProtKB/TrEMBL Q5WKC0  chitinase
[B] Bacillus haloduransBACHD00900  UniProtKB/TrEMBL Q9KED7  chitinase
[B] Bacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD00299  UniProtKB/TrEMBL Q65NR8  Glycoside hydrolase, chitinase active site; Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolism (GO:0005975) conserved protein, Glycoside Hydrolase Family 18, YvbX
[B] Listeria innocuaLISIN00153  UniProtKB/TrEMBL Q92FF3  highly similar to chitinase B
[B] Listeria monocytogenesLISMO00105  UniProtKB/TrEMBL C8JSV8  highly similar to chitinase B
[B] Listeria monocytogenes (serotype 4b / strain F2365)LISMF00121  UniProtKB/TrEMBL Q724V0  identified by similarity to GP:2696017; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839 chitinase B
[B] Listeria monocytogenes serotype 4a (strain HCC23)LISMH02487  UniProtKB/TrEMBL B8DGV4  Chitinase B
[B] Listeria monocytogenes serotype 4b (strain Clip81459)LISMC00111  UniProtKB/TrEMBL C1KXS9  Putative chitinase B
[B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)LISW600093  UniProtKB/TrEMBL A0AES9  Complete genome
[B] Clostridium botulinum (strain Eklund 17B / type B)CLOBB03065  UniProtKB/TrEMBL B2TQ75  Chitinase B