List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 262073

family 12
This group has 3 members: 3 [B]acteria
Fingerprint: TIQGRYV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC100616  UniProtKB/TrEMBL A0LSI2  cellulose-binding, family II PFAM: cellulose-binding, family II; glycoside hydrolase, family 12 KEGG: sma:SAV555 endo-1,4-beta-glucanase
[B] Phytoplasma sp. (strain STRAWB1)STRAW00555  UniProtKB/TrEMBL Q82QF4  Putative secreted endo-1,4-beta-glucanase
[B] Streptomyces coelicolorSTRCO01171  UniProtKB/TrEMBL Q9RJY3  SCG11A.18, celB, secreted cellulase B precursor, len: 381 aa; identical to TR:Q54331 (EMBL:U04629) Streptomyces lividans cellulase precursor, celB, 381 aa and similar to SW:GUX_CELFI (EMBL:M15824) Cellulomonas fimi exoglucanase/xylanase precursor [includes: exoglucanase (EC 3.2.1.91) (exocellobiohydrolase) (1,4-beta-cellobiohydrolase) (beta-1,4- glycanase Cex); endo-1,4-beta-xylanase B (EC 3.2.1.8) (xylanase B) Cex or XynB, 484 aa; fasta scores: opt: 422 z-score: 450.5 E(): 1e-17; 48.8% identity in 123 aa overlap. Contains two matches to Pfam entries PF01670 Glyco_hydro_12, Glycosyl hydrolase family 12 and PF00553 CBD_2, Cellulose binding domain and match to Prosite entry PS00561 Cellulose-binding domain, bacterial type. Contains also possible signal peptide sequence putative secreted cellulase B precursor