List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 29728

DNA POLYMERASE III
This group has 18 members: 18 [B]acteria
Fingerprint: TIFATIE

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Corynebacterium efficiensCOREF00613  UniProtKB/Swiss-Prot DNAE2_COREF  similar to AE007154-14|AAK47817.1| percent identity: 53 in 1062 aa putative DNA polymerase III alpha subunit
[B] Corynebacterium glutamicumCORGL01350  UniProtKB/Swiss-Prot DNAE2_CORGL  Error-prone DNA polymerase
[B] Corynebacterium jeikeium (strain K411)CORJK01641  UniProtKB/Swiss-Prot DNAE2_CORJK  DNA polymerase III, alpha subunit
[B] Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)CLAMS01724   CLAMS_Chromosome.1761  pseudo
[B] Arthrobacter aurescens (strain TC1)ARTAT02207  UniProtKB/TrEMBL A1R736  Putative DNA polymerase III, alpha subunit
[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA02013  UniProtKB/TrEMBL B8H9E9  DNA polymerase III, alpha subunit
[B] Arthrobacter sp. (strain FB24)ARTS202292  UniProtKB/TrEMBL A0JXC8  DNA polymerase III, alpha subunit KEGG: sma:SAV6555 putative DNA polymerase III alpha subunit TIGRFAM: DNA polymerase III, alpha subunit PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type SMART: phosphoesterase PHP domain protein
[B] Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG06564  UniProtKB/TrEMBL B1VMP5  Putative DNA polymerase III alpha subunit
[B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ01976  UniProtKB/TrEMBL B1LUJ1  DNA polymerase III, alpha subunit
[B] Rhizobium melilotiRHIME03129  UniProtKB/Swiss-Prot DNE21_RHIME  Product confidence : putative Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD PUTATIVE DNA POLYMERASE III ALPHA CHAIN PROTEIN
[B] Sinorhizobium medicae (strain WSM419)SINMW02964  UniProtKB/Swiss-Prot DNAE2_SINMW  DNA polymerase III, alpha subunit
[B] Silicibacter sp. (strain TM1040)SILST00175  UniProtKB/TrEMBL Q1GKA8  DNA polymerase III, alpha subunit KEGG: sil:SPO0670 DNA polymerase III, alpha subunit, putative, ev=0.0, 80% identity TIGRFAM: DNA polymerase III, alpha subunit: (4.1e-128) PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type: (2e-11) SMART: Phosphoesterase PHP-like: (1e-07)
[B] Cupriavidus taiwanensis (strain R1 / LMG 19424)CUPTR03993  UniProtKB/TrEMBL B3R9B5  DNA polymerase III, alpha subunit
[B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)RALEH04692  UniProtKB/TrEMBL Q0K2C1  DNA polymerase III alpha subunit
[B] Ralstonia eutropha (strain JMP134)RALEJ04481  UniProtKB/TrEMBL Q46SL1  DNA polymerase III, alpha subunit
[B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)RHOFD01187  UniProtKB/TrEMBL Q21Z42  DNA polymerase III, alpha subunit
[B] Pseudomonas stutzeri (strain A1501)PSEU502268  UniProtKB/TrEMBL A4VM01  DNA polymerase III, alpha subunit, putative
[B] Stenotrophomonas maltophilia (strain R551-3)STRM502368  UniProtKB/TrEMBL B4SMM1  DNA polymerase III, alpha subunit