List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 320027

family 39
This group has 12 members: 12 [B]acteria
Fingerprint: LGFRYIR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC500860  UniProtKB/TrEMBL C1F306  Xylann 1,4-beta-xylosidase
[B] Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)FLAJ100772  UniProtKB/TrEMBL A5FLV4  Glycoside hydrolase, family 39
[B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320)ANATD00171  UniProtKB/TrEMBL B9MMA7  Glycoside hydrolase family 39
[B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)CALS802262  UniProtKB/TrEMBL A4XM46  Glycoside hydrolase, family 39
[B] Caulobacter crescentusCAUCR02324  UniProtKB/TrEMBL Q9A5U0  Beta-xylosidase
[B] Caulobacter sp. (strain K31)CAUSK03071  UniProtKB/TrEMBL B0T1S0  Xylan 1,4-beta-xylosidase precursor
[B] Acidiphilium cryptum (strain JF-5)ACICJ03069  UniProtKB/TrEMBL A5FT29  Glycoside hydrolase, family 39
[B] Cellvibrio japonicus (strain Ueda107)CELJU02901  UniProtKB/TrEMBL B3PD50  Beta-xylosidase, putative, xyl39A
[B] Xanthomonas axonopodis (pv. citri)XANAC03947  UniProtKB/TrEMBL Q8PFC5  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark beta-xylosidase
[B] Xanthomonas campestris pv. campestrisXANCP03863  UniProtKB/TrEMBL Q8P3U4  Beta-xylosidase
[B] Xanthomonas campestris pv. campestris (strain 8004)XANC803952  UniProtKB/TrEMBL Q4UPB9  beta-xylosidase
[B] Xanthomonas campestris pv. campestris (strain B100)XANCB04152  UniProtKB/TrEMBL B0RXZ9  Exported xylan 1,4-beta-xylosidase