List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 330490

Alginate lyase 2
This group has 7 members: 7 [B]acteria
Fingerprint: SSKSTHR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Pseudomonas aeruginosaPSEAE01785  UniProtKB/TrEMBL Q9I2V8  Putative uncharacterized protein
[B] Pseudomonas aeruginosa (strain LESB58)PSEA803519  UniProtKB/TrEMBL B7VB95  Putative lyase
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB03302  UniProtKB/TrEMBL Q02KS5  putative lyase
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP101948  UniProtKB/TrEMBL A5W1W9  Alginate lyase 2
[B] Pseudomonas putida (strain GB-1)PSEPG02107  UniProtKB/TrEMBL B0KMH4  Alginate lyase 2 PFAM: Alginate lyase 2 KEGG: pap:PSPA7_2458 alginate lyase superfamily
[B] Pseudomonas putida (strain KT2440)PSEPK03715  UniProtKB/TrEMBL Q88GF0  identified by Glimmer2; putative conserved hypothetical protein
[B] Pseudomonas putida (strain W619)PSEPW03189  UniProtKB/TrEMBL B1JA51  Alginate lyase 2