List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 346263

Sialidase B
This group has 6 members: 6 [B]acteria
Fingerprint: SIANDAP

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Corynebacterium diphtheriaeCORDI00320  UniProtKB/TrEMBL Q6NJR3  C-terminal region similar to Micromonospora viridifaciens sialidase precursor NedA SW:NANH_MICVI (Q02834) (647 aa) fasta scores: E(): 1.8e-23, 34.24% id in 403 aa Conserved hypothetical protein
[B] Streptococcus pneumoniaeSTRPN01222  UniProtKB/TrEMBL A5LWW7  neuraminidase, putative
[B] Streptococcus pneumoniae (strain CGSP14)STRPS00838  UniProtKB/TrEMBL B2IP34  Neuraminidase, putative
[B] Streptococcus pneumoniae (strain Hungary19A-6)STRPI01335  UniProtKB/TrEMBL B1ICD8  Sialidase B
[B] Streptococcus pneumoniae (strain JJA)STRZJ01173  UniProtKB/TrEMBL C1CET1  Sialidase B
[B] Streptococcus pneumoniae serotype 19F (strain G54)STRP401193  UniProtKB/TrEMBL B5E561  Neuraminidase C