List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 5794

Alanine racemase
This group has 10 members: 10 [B]acteria
Fingerprint: LPRRYLE

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA02566  UniProtKB/TrEMBL B8HCF5  Alanine racemase
[B] Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)THET201931  UniProtKB/TrEMBL Q72GA4  Alanine racemase
[B] Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)THET800062  UniProtKB/TrEMBL Q5SM81  Alanine racemase
[B] Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)LISW600868  UniProtKB/Swiss-Prot ALR_LISW6  Dal protein
[B] Lactobacillus brevis (strain ATCC 367 / JCM 1170)LACBA00482  UniProtKB/Swiss-Prot ALR_LACBA  Alanine racemase
[B] Lactobacillus sakei subsp. sakei (strain 23K)LACSS01600  UniProtKB/Swiss-Prot ALR_LACSS  Alanine racemase
[B] Streptococcus mutansSTRMU01653  UniProtKB/Swiss-Prot ALR_STRMU  Best Blastp Hit: gb|AAD51027.1|AF171873_1 (AF171873) alanine racemase [Streptococcus pneumoniae] putative alanine racemase
[B] Streptococcus pyogenes serotype M4 (strain MGAS10750)STRPF01575  UniProtKB/Swiss-Prot ALR_STRPF  Alanine racemase
[B] Campylobacter concisus (strain 13826)CAMC100634  UniProtKB/Swiss-Prot ALR_CAMC1  Alanine racemase
[B] Treponema pallidumTREPA00676   NP_219118.1  similar to GP:1373382 percent identity: 100.00; identified by sequence similarity; putative alanine racemase (alr)