List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 91032

ribonuclease III
This group has 21 members: 2 [E]ukaryota 19 [B]acteria
Fingerprint: SAYANLF

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Ciona intestinalisCIOIN14963  Ensembl ENSCINP00000028357   -
[E] Helobdella robustaHELRO04990   68646  jgi|Helro1|68646
[B] Tropheryma whipplei (strain TW08/27)TROW800184   NP_789139.1  Similar to Escherichia coli ribonuclease III Rnc or b2567 or z3848 or ecs3433 SWALL:RNC_ECOLI (SWALL:P05797) (226 aa) fasta scores: E(): 3e-18, 35% id in 220 aa, and to Streptomyces coelicolor ribonuclease III Rnc or SCO5572 or SC7A1.16 SWALL:RNC_STRCO (SWALL:Q9ZBQ7) (272 aa) fasta scores: E(): 3.9e-26, 42.05% id in 214 aa ribonuclease III
[B] Tropheryma whipplei (strain Twist)TROWT00560  UniProtKB/Swiss-Prot RNC_TROWT  ribonuclease III
[B] Porphyromonas gingivalisPORGI01461  UniProtKB/TrEMBL Q7MU11  similar to GB:L06133, GB:L06476, SP:Q04656, PID:179253, PID:2052036, PID:2052038, PID:34705, PID:464228, PID:854136, and PID:987255; identified by sequence similarity; putative ribonuclease III
[B] Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)PORG301634  UniProtKB/TrEMBL B2RLH7  Putative ribonuclease III
[B] Chlamydia muridarumCHLMU00558  UniProtKB/Swiss-Prot RNC_CHLMU  identified by match to PFAM protein family HMM PF00636 ribonuclease III
[B] Chlamydia trachomatisCHLTR00301  UniProtKB/Swiss-Prot RNC_CHLTR  Ribonuclease III
[B] Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B)CHLTA00308  UniProtKB/Swiss-Prot RNC_CHLTA  ribonuclease III
[B] Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B)CHLT200545  UniProtKB/Swiss-Prot RNC_CHLT2  Ribonuclease III
[B] Chlamydia trachomatis (strain L2b/UCH-1/proctitis)CHLTB00545  UniProtKB/Swiss-Prot RNC_CHLTB  Ribonuclease III
[B] Chlamydia pneumoniaeCHLPN00551  UniProtKB/Swiss-Prot RNC_CHLPN  Ribonuclease 3
[B] Chlamydophila abortusCHLAB00325  UniProtKB/Swiss-Prot RNC_CHLAB  Similar to Bacillus subtilis ribonuclease III or RncS SWALL:RNC_BACSU (SWALL:P51833) (249 aa) fasta scores: E(): 2.4e-21, 37.44% id in 219 aa and to Chlamydia pneumoniae ribonuclease III Rnc or cpn0054 or cp0721 SWALL:RNC_CHLPN (SWALL:Q9Z9C7) (237 aa) fasta scores: E(): 1.3e-67, 72.57% id in 237 aa ribonuclease III
[B] Chlamydophila caviaeCHLCV00337  UniProtKB/Swiss-Prot RNC_CHLCV  similar to GB:L01055, SP:P31715, GB:S65052, PID:295156, and PID:410007; identified by sequence similarity; putative ribonuclease III
[B] Chlamydophila felis (strain Fe/C-56)CHLFF00663  UniProtKB/Swiss-Prot RNC_CHLFF  ribonuclease III EC 3.1.26.3
[B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320)ANATD01082  UniProtKB/TrEMBL B9MRF6  Ribonuclease III
[B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)CALS801491  UniProtKB/TrEMBL A4XJW5  Ribonuclease III
[B] Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)ACIBT02435   ABO12936.1  Ribonuclease III
[B] Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)VESOH00544  UniProtKB/TrEMBL A5CWK1  Ribonuclease III
[B] Mycoplasma mobileMYCMO00411  UniProtKB/Swiss-Prot RNC_MYCMO  COG0571; expression validated by proteogenomic mapping: 2 unique peptides covering 9.8% of sequence ribonuclease III
[B] Mycoplasma synoviae (strain 53)MYCS500657  UniProtKB/Swiss-Prot RNC_MYCS5  identified by sequence similarity; putative; ORF located using Blastx; COG0571 dsRNA-specific ribonuclease III