List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 182830

tRNA
This group has 8 members: 8 [B]acteria
Fingerprint: RYLYDRE

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Streptomyces coelicolorSTRCO05563  UniProtKB/Swiss-Prot TRMD_STRCO  SC2E1.11, trmD, probable tRNA (guanine-N1)-methyltransferase, len: 277 aa; similar to many e.g. TRMD_ECOLI (EC2.1.1.31) (255 aa), fasta scores; opt: 437 z-score: 660.6E(): 1.5e-29, 41.2% identity in 238 aa overlap tRNA (guanine-N1)-methyltransferase
[B] Hydrogenobaculum sp. (strain Y04AAS1)HYDS000119  UniProtKB/TrEMBL B4U6P3  tRNA (Guanine-N1)-methyltransferase
[B] Chlamydophila abortusCHLAB00614  UniProtKB/Swiss-Prot TRMD_CHLAB  Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri tRNA(guanine-N(1)-)-methyltransferase TrmD or B2607 or C3128 or Z3901 or ECS3470 or SF2667 or S2844 SWALL:TRMD_ECOLI (SWALL:P07020) (255 aa) fasta scores: E(): 2e-37, 51.12% id in 223 aa, and to Vibrio vulnificus tRNA(guanine-N(1)-)-methyltransferase TrmD or VV11617 SWALL:TRMD_VIBVU (SWALL:Q8CWK5) (249 aa) fasta scores: E(): 3.4e-39, 46.77% id in 248 aa putative tRNA(guanine-N(1)-)-methyltransferase
[B] Chlamydophila caviaeCHLCV00644  UniProtKB/Swiss-Prot TRMD_CHLCV  similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; putative tRNA (guanine-N1)-methyltransferase
[B] Chlamydophila felis (strain Fe/C-56)CHLFF00355  UniProtKB/Swiss-Prot TRMD_CHLFF  tRNA/rRNA methyltransferase EC 2.1.1.-
[B] Hyphomonas neptunium (strain ATCC 15444)HYPNA00045  UniProtKB/TrEMBL Q0C664  TRNA (Guanine-N1)-methyltransferase
[B] Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)SULDN00453  UniProtKB/Swiss-Prot TRMD_SULDN  tRNA (guanine-N(1)-)-methyltransferase
[B] Acholeplasma laidlawii (strain PG-8A)ACHLI01143  UniProtKB/Swiss-Prot TRMD_ACHLI  tRNA (Guanine-N1-)-methyltransferase