List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 351426

Alginate lyase
This group has 20 members: 20 [B]acteria
Fingerprint: RSKYEGS

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Bordetella avium (strain 197N)BORA102819  UniProtKB/TrEMBL Q2KVN4  putative alginate lyase
[B] Burkholderia sp. (strain 383)BURS307142  UniProtKB/TrEMBL Q39MU7  hypothetical protein
[B] Ralstonia pickettii (strain 12J)RALPJ03457  UniProtKB/TrEMBL B2UH07  Alginate lyase
[B] Enterobacter sp. (strain 638)ENT3802022  UniProtKB/TrEMBL A4WAI4  Poly(Beta-D-mannuronate) lyase
[B] Pseudomonas aeruginosaPSEAE03539  UniProtKB/Swiss-Prot ALGL_PSEAE  Alginate lyase
[B] Pseudomonas aeruginosa (strain LESB58)PSEA801470  UniProtKB/Swiss-Prot ALGL_PSEA8  Alginate lyase
[B] Pseudomonas aeruginosa (strain PA7)PSEA701555  UniProtKB/Swiss-Prot ALGL_PSEA7  Alginate lyase precursor
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB01459  UniProtKB/Swiss-Prot ALGL_PSEAB  poly(beta-d-mannuronate) lyase precursor AlgL
[B] Pseudomonas entomophila (strain L48)PSEE404217  UniProtKB/Swiss-Prot ALGL_PSEE4  alginate lyase AlgL Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8370530, 8335634; Product type e : enzyme
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF500996  UniProtKB/Swiss-Prot ALGL_PSEF5  identified by similarity to GB:AAF32371.1; match to protein family HMM PF05426 alginate lyase
[B] Pseudomonas fluorescens (strain PfO-1)PSEPF00948  UniProtKB/Swiss-Prot ALGL_PSEPF  Poly(beta-D-mannuronate) lyase
[B] Pseudomonas mendocina (strain ymp)PSEMY01008  UniProtKB/TrEMBL A4XR26  Poly(Beta-D-mannuronate) lyase precursor
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP104380  UniProtKB/Swiss-Prot ALGL_PSEP1  Poly(Beta-D-mannuronate) lyase precursor
[B] Pseudomonas putida (strain GB-1)PSEPG04527  UniProtKB/Swiss-Prot ALGL_PSEPG  Poly(beta-D-mannuronate) lyase unknown EC_number=4.2.2.3 PFAM: Alginate lyase KEGG: pen:PSEEN4542 alginate lyase AlgL
[B] Pseudomonas putida (strain KT2440)PSEPK01264  UniProtKB/Swiss-Prot ALGL_PSEPK  similar to GP:3786335; identified by sequence similarity; putative alginate lyase
[B] Pseudomonas putida (strain W619)PSEPW00880  UniProtKB/Swiss-Prot ALGL_PSEPW  Poly(Beta-D-mannuronate) lyase precursor
[B] Pseudomonas syringae (pv. tomato)PSESM01157  UniProtKB/Swiss-Prot ALGL_PSESM  alginate lyase
[B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)PSE1401037  UniProtKB/TrEMBL Q48MJ3  identified by similarity to GB:AAF32371.1; match to protein family HMM PF05426 alginate lyase
[B] Pseudomonas syringae pv. syringae (strain B728a)PSEU201045  UniProtKB/Swiss-Prot ALGL_PSEU2  Poly(beta-D-mannuronate) lyase
[B] Stenotrophomonas maltophilia (strain K279a)STRMK01377  UniProtKB/TrEMBL B2FHL8  Putative alginate lyase precursor