List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 3901
Glycogen debranching enzyme
This group has 5 members: 2 [A]rchaea 3 [B]acteria
Fingerprint: RQIKNFA
| [A] Methanosarcina acetivorans | METAC01918 | Q8TPB3 | Glycogen debranching enzyme |
| [A] Methanosarcina barkeri (strain Fusaro / DSM 804) | METBF02417 | Q469L2 | glycogen debranching enzyme |
| [B] Chlamydophila caviae | CHLCV00401 | Q823K2 | identified by match to PFAM protein family HMM PF02922 glycosyl hydrolase family protein |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN00860 | A1STC0 | glycogen debranching enzyme GlgX KEGG: syd:Syncc9605_0815 glycogen debranching enzyme GlgX TIGRFAM: glycogen debranching enzyme GlgX PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region SMART: alpha amylase, catalytic sub domain |
| [B] Methylococcus capsulatus | METCA00287 | Q60C15 | identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 glycogen debranching enzyme GlgX |