List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
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OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 289934

monomeric form TIGRFAM: phenylalanine-4-hydroxylase PFAM: aromatic amino acid hydroxylase
This group has 13 members: 1 [E]ukaryota 12 [B]acteria
Fingerprint: YKIDSYQ

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Branchiostoma floridaeBRAFL25275  UniProtKB/TrEMBL C3ZPR8  jgi|Brafl1|233334|e_gw.302.1.1
[B] Nocardia farcinicaNOCFA00944  UniProtKB/TrEMBL Q5Z1A5  putative phenylalanine hydroxylase
[B] Frankia sp. (strain EAN1pec)FRASN05275  UniProtKB/TrEMBL A8L3H0  Tyrosine 3-monooxygenase
[B] Salinibacter ruber (strain DSM 13855)SALRD02002  UniProtKB/TrEMBL Q2S0V6  tryptophan 5-hydroxylase 1 identified by match to protein family HMM PF00351
[B] Rhizobium lotiRHILO03713  UniProtKB/Swiss-Prot PH4H_RHILO  phenylalanine-4-hydroxylase (EC 1.14.16.1)
[B] Acidovorax avenae subsp. citrulli (strain AAC00-1)ACIAC04009  UniProtKB/TrEMBL A1TUU5  phenylalanine-4-hydroxylase KEGG: pol:Bpro_4215 phenylalanine-4-hydroxylase, monomeric form TIGRFAM: phenylalanine-4-hydroxylase PFAM: aromatic amino acid hydroxylase
[B] Acidovorax sp. (strain JS42)ACISJ00508  UniProtKB/TrEMBL A1W3E3  phenylalanine-4-hydroxylase KEGG: pol:Bpro_4215 phenylalanine-4-hydroxylase, monomeric form TIGRFAM: phenylalanine-4-hydroxylase PFAM: aromatic amino acid hydroxylase
[B] Delftia acidovorans (strain DSM 14801 / SPH-1)DELAS01263  UniProtKB/TrEMBL A9BXX6  Phenylalanine-4-hydroxylase
[B] Diaphorobacter sp. (strain TPSY)DIAST00523  UniProtKB/TrEMBL B9MCL4  Phenylalanine-4-hydroxylase
[B] Polaromonas sp. (strain JS666 / ATCC BAA-500)POLSJ04127  UniProtKB/TrEMBL Q124D5  Phenylalanine-4-hydroxylase, monomeric form
[B] Verminephrobacter eiseniae (strain EF01-2)VEREI02073  UniProtKB/TrEMBL A1WJS7  Phenylalanine-4-hydroxylase
[B] Methylibium petroleiphilum (strain PM1)METPP00347  UniProtKB/TrEMBL A2SCM0  Phenylalanine 4-monooxygenase
[B] Xanthomonas axonopodis (pv. citri)XANAC00170  UniProtKB/TrEMBL Q8PQZ5  identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phenylalanine hydroxylase