List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA Group 388661
This group has 2 members: 2 [B]acteria
Fingerprint: RESITAY
| [B] Salinispora arenicola (strain CNS-205) | SALAI00074 | A8LWI7 | Peptidase M28 |
| [B] Streptomyces coelicolor | STRCO01210 | Q8CK35 | 2SCG1.01c, possible secreted metallopeptidase (fragment), len: >385 aa; similar to TR:CAB76001 (EMBL:AL157916) Streptomyces coelicolor putative neutral zinc metallopeptidase SC3D11.04c, 684 aa; fasta scores: opt: 504 z-score: 545.2 E(): 6.7e-23; 35.2% identity in 406 aa overlap. Contains match to Prosite entry PS00142 Neutral zinc metallopeptidases, zinc-binding region signature. Also contains possible N-terminal region signal peptide sequence 2SCG58.26c, possible bifunctional protein (fragment), len: >713 aa; middle region highly similar to SW:APX_STRGR Streptomyces griseus aminopeptidase (EC 3.4.11.-) SgaP, 284 aa; fasta scores: opt: 967 z-score: 978.8 E(): 0; 51.1% identity in 284 aa overlap and C-terminal region similar to C-terminal region of SW:CHI1_BACCI (EMBL:M57601) Bacillus circulans chitinase A1 precursor (EC 3.2.1.14) ChiA1, 699 aa; fasta scores: opt: 283 z-score: 287.0 E(): 1.6e-08; 25.0% identity in 476 aa overlap putative bifunctional protein |