List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 349556

Type II restriction
This group has 16 members: 16 [B]acteria
Fingerprint: QYELKSK

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Streptococcus pneumoniaeSTRPN01709  UniProtKB/Swiss-Prot T2D1_STRPN  similar to SP:P09356 GB:S56948 PID:153606; identified by sequence similarity; putative type II restriction endonuclease DpnI
[B] Streptococcus pneumoniae (strain ATCC BAA-255 / R6)STRR601655  UniProtKB/Swiss-Prot T2D1_STRR6  Type II restriction enzyme DpnI (dpnC)
[B] Streptococcus pneumoniae (strain CGSP14)STRPS01807  UniProtKB/TrEMBL B2ISU9  Type II restriction endonuclease DpnI
[B] Streptococcus pneumoniae (strain JJA)STRZJ01667  UniProtKB/TrEMBL C1CG75  Type II restriction enzyme
[B] Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)STRP201546  UniProtKB/TrEMBL Q04IV6  Dam-replacing family protein equivalent gene in S.pneumoniae TIGR4 = SP1850; equivalent gene in S.pneumoniae R6 = spr1665; identified by match to protein family HMM PF06044
[B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)NEIG100006  UniProtKB/TrEMBL Q5FAK4  Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON) COG0338 Site-specific DNA methylase dam putative type II restriction endonuclease
[B] Neisseria gonorrhoeae (strain NCCP11945)NEIG200010  UniProtKB/TrEMBL B4RNT2  Dam-replacing protein
[B] Neisseria meningitidis serogroup ANEIMA00501  UniProtKB/TrEMBL A1IQ10  Putative type II restriction endonuclease
[B] Neisseria meningitidis serogroup BNEIMB01751  UniProtKB/TrEMBL Q9JXT3  Type II restriction enzyme DpnI
[B] Neisseria meningitidis serogroup C (strain 053442)NEIM000297  UniProtKB/TrEMBL A9M163  type II restriction endonuclease
[B] Psychrobacter arcticus (strain DSM 17307 / 273-4)PSYA200141  UniProtKB/TrEMBL Q4FVE1  Putative type II restriction endonuclease DpnI
[B] Psychrobacter cryohalolentis (strain K5)PSYCK00153  UniProtKB/TrEMBL Q1QEG6  putative type II restriction endonuclease DpnI
[B] Psychrobacter sp. (strain PRwf-1)PSYWF00123  UniProtKB/TrEMBL A5WBP3  Type II site-specific deoxyribonuclease
[B] Francisella tularensis subsp. novicida (strain U112)FRATN01644  UniProtKB/TrEMBL A0Q8J0  Dam-replacing family protein
[B] Treponema denticolaTREDE01256  UniProtKB/TrEMBL Q73N87  type II restriction endonuclease TdeI
[B] Akkermansia muciniphila (strain ATCC BAA-835)AKKM801537  UniProtKB/TrEMBL B2ULJ8  Type II site-specific deoxyribonuclease