List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 25303

Peptide deformylase
This group has 14 members: 14 [B]acteria
Fingerprint: QRFTIWR

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Microcystis aeruginosa (strain NIES-843)MICAN02120  UniProtKB/TrEMBL B0JGA5  Polypeptide deformylase
[B] Anabaena sp. (strain PCC 7120)ANASP01984  UniProtKB/Swiss-Prot DEF2_ANASP  Peptide deformylase 2
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP705983  UniProtKB/TrEMBL B2J0J9  Peptide deformylase
[B] Psychromonas ingrahamii (strain 37)PSYIN03124  UniProtKB/TrEMBL A1SZU5  peptide deformylase KEGG: ava:Ava_5067 formylmethionine deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase
[B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)SHEAM00633  UniProtKB/TrEMBL A1S391  Peptide deformylase KEGG: son:SO1062 polypeptide deformylase
[B] Shewanella oneidensisSHEON01018  UniProtKB/Swiss-Prot DEF2_SHEON  Peptide deformylase 2
[B] Shewanella sp. (strain MR-4)SHESM03020  UniProtKB/TrEMBL Q0HFQ9  Peptide deformylase precursor
[B] Shewanella sp. (strain MR-7)SHESR00927  UniProtKB/TrEMBL Q0HY69  Peptide deformylase precursor
[B] Acinetobacter baumannii (strain AB0057)ACIB500996  UniProtKB/TrEMBL B7I8N4  Peptide deformylase
[B] Acinetobacter baumannii (strain AB307-0294)ACIB302602  UniProtKB/TrEMBL B7GXZ8  Peptide deformylase
[B] Acinetobacter baumannii (strain ACICU)ACIBC00918  UniProtKB/TrEMBL B2HVB3  N-formylmethionyl-tRNA deformylase
[B] Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)ACIBT00895   ABO11393.1  Peptide deformylase 2
[B] Acinetobacter baumannii (strain AYE)ACIBY02624  UniProtKB/TrEMBL B0V9I4  Peptide deformylase 2
[B] Acinetobacter sp. (strain ADP1)ACIAD00939  UniProtKB/TrEMBL Q6FDC9  Evidence 2b : Function of strongly homologous gene; Product type e : enzyme peptide deformylase 2