List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 54269

N-acetylmuramoyl-L-alanine amidase
This group has 7 members: 7 [B]acteria
Fingerprint: QKIKLRE

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z)ACTSZ00974  UniProtKB/TrEMBL A6VN11  N-acetylmuramoyl-L-alanine amidase precursor
[B] Haemophilus influenzaeHAEIN00066  UniProtKB/Swiss-Prot AMIB_HAEIN  Probable N-acetylmuramoyl-L-alanine amidase amiB
[B] Haemophilus influenzae (strain 86-028NP)HAEI800066  UniProtKB/TrEMBL Q4QPH8  Similar to: HI0066, AMIB_HAEIN probable N-acetylmuramoyl-L-alanine amidase AmiB precursor
[B] Haemophilus influenzae (strain PittGG)HAEIG00460  UniProtKB/TrEMBL A5UFN3  Fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component
[B] Haemophilus somnus (strain 129PT)HAES101085  UniProtKB/TrEMBL Q0I464  N-acetylmuramoyl-L-alanine amidase
[B] Haemophilus somnus (strain 2336)HAES201527  UniProtKB/TrEMBL B0UUU4  N-acetylmuramoyl-L-alanine amidase precursor
[B] Pasteurella multocidaPASMU00903  UniProtKB/TrEMBL Q9CMC8  Putative uncharacterized protein