List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 227596

LIPOPROTEIN
This group has 9 members: 1 [E]ukaryota 8 [B]acteria
Fingerprint: DISNIAF

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[E] Xenopus tropicalisXENTR20723  Ensembl ENSXETP00000016567   -
[B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC00205  UniProtKB/TrEMBL Q0BVP9  Lipoprotein
[B] Orientia tsutsugamushi (strain Boryong)ORITB01424  UniProtKB/TrEMBL A5CF13  VacJ-like lipoprotein
[B] Orientia tsutsugamushi (strain Ikeda)ORITI00903  UniProtKB/TrEMBL B3CTD3  Vacj lipoprotein
[B] Rickettsia prowazekiiRICPR00090  UniProtKB/Swiss-Prot Y093_RICPR  VACJ LIPOPROTEIN PRECURSOR (vacJ)
[B] Ralstonia solanacearumRALSO04296  UniProtKB/TrEMBL Q8XRD8  Product confidence : probable Gene name confidence : hypothetical predicted by Codon_usage predicted by FrameD PROBABLE LIPOPROTEIN
[B] Desulfovibrio desulfuricans (strain G20)DESDG02253  UniProtKB/TrEMBL Q30YZ8  Surface lipoprotein-like
[B] Lawsonia intracellularis (strain PHE/MN1-00)LAWIP00235  UniProtKB/TrEMBL Q1MRT5  Surface lipoprotein
[B] Magnetococcus sp. (strain MC-1)MAGSM02839  UniProtKB/TrEMBL A0LC00  VacJ family lipoprotein PFAM: VacJ family lipoprotein KEGG: pca:Pcar_0450 surface lipoprotein-like