| [E] Xenopus tropicalis | XENTR20152 | ENSXETP00000047128 | - |
| [E] Oryza sativa | ORYSA26039 | BAF30079.1 | Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase) ab initio prediction with EST support contains InterPro domain(s): IPR001653 has GO asignment(s): GO:0008837, GO:0009089 similar to P74667 |
| [E] Arabidopsis thaliana | ARATH15282 | DAPF_ARATH | diaminopimelate epimerase family protein, contains Pfam profile PF01678: Diaminopimelate epimerase; go_component: chloroplast [goid GO:0008837@[IGI,ISS]; GO:0009089@[IEA]; GO:0009507@[IDA]] [evidence IEA]; go_function: diaminopimelate epimerase activity [goid GO:0008837] [evidence IGI] [pmid 15652176]; go_function: diaminopimelate epimerase activity [goid GO:0008837] [evidence ISS]; go_process: lysine biosynthesis via diaminopimelate [goid GO:0009089] [evidence IEA] diaminopimelate epimerase |
| [E] Vitis vinifera | VITVI03471 | A7PSY2 | |
| [A] Archaeoglobus fulgidus | ARCFU00730 | DAPF_ARCFU | Diaminopimelate epimerase |
| [A] Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) | METS301361 | A5UMZ9 | Diaminopimelate epimerase, DapF |
| [A] Methanosphaera stadtmanae (strain DSM 3091) | METST01521 | Q2NE08 | DapF putative diaminopimelate epimerase; COG0253, pfam01678 |
| [A] Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) | META300203 | DAPF_META3 | Diaminopimelate epimerase |
| [A] Methanococcus maripaludis | METMP00917 | DAPF_METMP | Diaminopimelate epimerase |
| [A] Methanococcus maripaludis (strain C5 / ATCC BAA-1333) | METM500716 | DAPF_METM5 | Diaminopimelate epimerase |
| [A] Methanoregula boonei (strain 6A8) | METB602421 | A7IB34 | Diaminopimelate epimerase |
| [A] Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) | METLZ00556 | A2SQX8 | Hypothetical protein |
| [A] Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) | METPE00247 | B8GJ70 | Diaminopimelate epimerase |
| [A] Methanosaeta thermophila (strain DSM 6194 / PT) | METTP00438 | DAPF_METTP | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mhu:Mhun_2316 diaminopimelate epimerase |
| [B] Acidobacteria bacterium (strain Ellin345) | ACIBL02616 | Q1INC7 | Diaminopimelate epimerase |
| [B] Corynebacterium glutamicum | CORGL02463 | DAPF_CORGL | Diaminopimelate epimerase |
| [B] Corynebacterium glutamicum (strain R) | CORGB01804 | DAPF_CORGB | Hypothetical protein |
| [B] Frankia sp. (strain EAN1pec) | FRASN01207 | A8L6K2 | Diaminopimelate epimerase |
| [B] Nocardioides sp. (strain BAA-499 / JS614) | NOCSJ03765 | A1SNF4 | Diaminopimelate epimerase |
| [B] Streptomyces coelicolor | STRCO05758 | DAPF_STRCO | SC4H2.14, dapF, probable diaminopimelate epimerase, len: 289 aa; similar to many e.g. DAPF_ECOLI P08885 diaminopimelate epimerase (ec 5.1.1.7) (275 aa), fasta scores; opt: 312 z-score: 525.5 E(): 4.8e-22, 34.1% identity in 287 aa overlap diaminopimelate epimerase |
| [B] Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) | RUBXD00094 | Q1AZV3 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: mta:Moth_0888 diaminopimelate epimerase |
| [B] Symbiobacterium thermophilum | SYMTH00230 | Q67SX4 | diaminopimelate epimerase |
| [B] Bacteroides fragilis | BACFR02630 | DAPF_BACFR | similar to sp:DAPF_BACTN [Bacteroides thetaiotaomicron VPI-5482], percent identity 75 in 266 aa, BLASTP E(): e-117 diaminopimelate epimerase |
| [B] Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | BACFN02581 | Q5LC04 | Similar to Escherichia coli, and Escherichia coli O157:H7 diaminopimelate epimerase DapF or B3809 or Z5326 or ECS4739 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3.6e-17, 38.71% id in 279 aa, and to Aquifex aeolicus diaminopimelate epimerase DapF or AQ_1838 SWALL:DAPF_AQUAE (SWALL:O67693) (279 aa) fasta scores: E(): 3.6e-25, 36.36% id in 275 aa diaminopimelate epimerase |
| [B] Bacteroides thetaiotaomicron | BACTN00544 | DAPF_BACTN | Diaminopimelate epimerase |
| [B] Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) | BACV803794 | DAPF_BACV8 | Diaminopimelate epimerase |
| [B] Azobacteroides pseudotrichonymphae genomovar. CFP2 | AZOPC00715 | DAPF_AZOPC | Diaminopimelate epimerase |
| [B] Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) | PARD800305 | DAPF_PARD8 | Diaminopimelate epimerase |
| [B] Acaryochloris marina (strain MBIC 11017) | ACAM102202 | DAPF_ACAM1 | Diaminopimelate epimerase |
| [B] Cyanothece (strain ATCC 51142) | CYAA504081 | B1WRQ3 | Diaminopimelate epimerase |
| [B] Cyanothece sp. (strain PCC 7425 / ATCC 29141) | CYAP400339 | DAPF_CYAP4 | Diaminopimelate epimerase |
| [B] Gloeobacter violaceus | GLOVI00813 | Q7NMF1 | diaminopimelate epimerase |
| [B] Microcystis aeruginosa (strain NIES-843) | MICAN05585 | DAPF_MICAN | Diaminopimelate epimerase |
| [B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) | SYNP201614 | DAPF_SYNP2 | Diaminopimelate epimerase |
| [B] Synechococcus sp. (strain CC9902) | SYNS901096 | Q3AXV6 | Diaminopimelate epimerase |
| [B] Synechococcus sp. (strain JA-2-3B'a(2-13)) | SYNJB01322 | DAPF_SYNJB | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Synechococcus sp. (strain JA-3-3Ab) | SYNJA01233 | DAPF_SYNJA | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Synechococcus sp. (strain PCC 6301) | SYNP602162 | DAPF_SYNP6 | diaminopimelate epimerase |
| [B] Synechocystis sp. (strain PCC 6803) | SYNY303041 | DAPF_SYNY3 | Diaminopimelate epimerase |
| [B] Thermosynechococcus elongatus (strain BP-1) | THEEB02265 | DAPF_THEEB | Diaminopimelate epimerase |
| [B] Anabaena variabilis (strain ATCC 29413 / PCC 7937) | ANAVT03023 | Q3M8I9 | Diaminopimelate epimerase |
| [B] Anabaena sp. (strain PCC 7120) | ANASP02025 | DAPF2_ANASP | Diaminopimelate epimerase 2 |
| [B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102) | NOSP704669 | DAPF_NOSP7 | Diaminopimelate epimerase |
| [B] Trichodesmium erythraeum (strain IMS101) | TRIEI00972 | DAPF_TRIEI | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus | PROMA00946 | Q7VBZ4 | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus (strain MIT 9211) | PROM400876 | A9BAE5 | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus (strain MIT 9312) | PROM900970 | Q31AX3 | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus (strain MIT 9515) | PROM500964 | A2BWL6 | Diaminopimelate epimerase COG253 Diaminopimelate epimerase [Amino acid transport and metabolism] |
| [B] Prochlorococcus marinus (strain NATL1A) | PROM100985 | DAPF_PROM1 | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus (strain NATL2A) | PROMT00938 | DAPF_PROMT | Diaminopimelate epimerase |
| [B] Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) | PROMP01008 | Q7V1I3 | Diaminopimelate epimerase |
| [B] Bacillus amyloliquefaciens (strain FZB42) | BACA202810 | DAPF_BACA2 | DapF |
| [B] Bacillus anthracis | BACAN04775 | DAPF_BACAN | identified by match to PFAM protein family HMM PF01678 diaminopimelate epimerase |
| [B] Bacillus cereus (strain AH187) | BACC704820 | DAPF_BACC7 | Diaminopimelate epimerase |
| [B] Bacillus cereus (strain ATCC 10987) | BACC105030 | DAPF_BACC1 | identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Bacillus cereus (strain ATCC 14579 / DSM 31) | BACCR04688 | DAPF_BACCR | Diaminopimelate epimerase |
| [B] Bacillus cereus (strain G9842) | BACC204933 | DAPF_BACC2 | Diaminopimelate epimerase |
| [B] Bacillus cereus (strain ZK) | BACCZ04621 | DAPF_BACCZ | diaminopimelate epimerase |
| [B] Bacillus cereus subsp. cytotoxis (strain NVH 391-98) | BACCN03369 | DAPF_BACCN | Diaminopimelate epimerase |
| [B] Bacillus clausii (strain KSM-K16) | BACSK02921 | Q5WDU2 | diaminopimelate epimerase |
| [B] Bacillus halodurans | BACHD03358 | DAPF_BACHD | diaminopimelate epimerase |
| [B] Bacillus licheniformis (strain DSM 13 / ATCC 14580) | BACLD03196 | DAPF_BACLD | InterProMatches:IPR001653; Molecular Function: diaminopimelate epimerase activity (GO:0008837), Biological Process: lysine biosynthesis via diaminopimelate (GO:0009089) diaminopimelate epimerase |
| [B] Bacillus pumilus (strain SAFR-032) | BACP202825 | DAPF_BACP2 | Diaminopimelate epimerase |
| [B] Bacillus subtilis | BACSU03215 | DAPF_BACSU | Diaminopimelate epimerase |
| [B] Bacillus thuringiensis (strain Al Hakam) | BACAH04242 | DAPF_BACAH | diaminopimelate epimerase |
| [B] Bacillus thuringiensis (subsp. konkukian) | BACHK04567 | DAPF_BACHK | diaminopimelate epimerase |
| [B] Bacillus weihenstephanensis (strain KBAB4) | BACWK04637 | DAPF_BACWK | Diaminopimelate epimerase |
| [B] Geobacillus kaustophilus | GEOKA02927 | DAPF_GEOKA | diaminopimelate epimerase |
| [B] Geobacillus thermodenitrificans (strain NG80-2) | GEOTN02844 | DAPF_GEOTN | Diaminopimelate epimerase |
| [B] Oceanobacillus iheyensis | OCEIH02343 | DAPF_OCEIH | CDS_ID OB2354 diaminopimelate epimerase |
| [B] Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) | BREBN04055 | C0ZH35 | Diaminopimelate epimerase |
| [B] Anaerocellum thermophilum (strain DSM 6725 / Z-1320) | ANATD02007 | B9MLW7 | Diaminopimelate epimerase |
| [B] Alkaliphilus metalliredigens (strain QYMF) | ALKMQ02560 | DAPF_ALKMQ | Diaminopimelate epimerase |
| [B] Alkaliphilus oremlandii (strain OhILAs) | ALKOO01391 | DAPF_ALKOO | Diaminopimelate epimerase |
| [B] Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) | CLOB801577 | A6LTU4 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain ATCC 19397 / Type A) | CLOB101760 | A7FUW7 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Alaska E43 / type E3) | CLOBA02106 | B2V4U0 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Eklund 17B / type B) | CLOBB02350 | B2TRP9 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) | CLOBH01898 | A5I336 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) | CLOBL01865 | A7GEM4 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Loch Maree / Type A3) | CLOBM01970 | B1KTZ0 | Diaminopimelate epimerase |
| [B] Clostridium botulinum (strain Okra / Type B1) | CLOBK01847 | B1IMS5 | Diaminopimelate epimerase |
| [B] Clostridium difficile (strain 630) | CLOD602623 | Q182T1 | diaminopimelate epimerase |
| [B] Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) | CLOK501148 | A5N7G4 | DapF |
| [B] Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) | CLOPH00624 | A9KJ18 | Diaminopimelate epimerase |
| [B] Clostridium thermocellum (strain ATCC 27405 / DSM 1237) | CLOTH02964 | DAPF_CLOTH | Diaminopimelate epimerase |
| [B] Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) | HELMI01991 | DAPF_HELMI | Diaminopimelate epimerase |
| [B] Desulforudis audaxviator (strain MP104C) | DESAP01519 | DAPF_DESAP | Diaminopimelate epimerase |
| [B] Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) | CARHZ01440 | DAPF_CARHZ | identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Desulfitobacterium hafniense (strain Y51) | DESHY02710 | Q24TW0 | hypothetical protein similarity to COG0253 Diaminopimelate epimerase(Evalue: 3E-76) |
| [B] Desulfotomaculum reducens (strain MI-1) | DESRM01622 | DAPF_DESRM | Diaminopimelate epimerase |
| [B] Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) | PELTS01781 | DAPF_PELTS | Diaminopimelate epimerase |
| [B] Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) | CALS801210 | A4XJ32 | Diaminopimelate epimerase |
| [B] Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) | HALOH01130 | DAPF_HALOH | Diaminopimelate epimerase |
| [B] Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) | NATTJ01845 | DAPF_NATTJ | Diaminopimelate epimerase |
| [B] Moorella thermoacetica (strain ATCC 39073) | MOOTA00853 | DAPF_MOOTA | diaminopimelate epimerase |
| [B] Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) | THEP301269 | B0KA18 | Diaminopimelate epimerase |
| [B] Thermoanaerobacter sp. (strain X514) | THEPX01702 | B0K299 | Diaminopimelate epimerase |
| [B] Thermoanaerobacter tengcongensis | THETN01381 | DAPF_THETN | Best Blastp hit = gi|8247916|sp|O27389|DapF_METTH DIAMINOPIMELATE EPIMERASE (Dap EPIMERASE), score 206, E-value 3.00E-52 Diaminopimelate epimerase |
| [B] Lactobacillus reuteri (strain DSM 20016) | LACRD00589 | A5VJ53 | Diaminopimelate epimerase |
| [B] Lactobacillus reuteri (strain JCM 1112) | LACRJ00578 | B2G6M4 | diaminopimelate epimerase |
| [B] Caulobacter crescentus | CAUCR03637 | DAPF_CAUCR | Diaminopimelate epimerase |
| [B] Caulobacter sp. (strain K31) | CAUSK04783 | DAPF_CAUSK | Diaminopimelate epimerase |
| [B] Phenylobacterium zucineum (strain HLK1) | PHEZH00127 | DAPF_PHEZH | Diaminopimelate epimerase |
| [B] Bartonella henselae | BARHE01567 | DAPF_BARHE | Diaminopimelate epimerase |
| [B] Bartonella quintana | BARQU01291 | DAPF_BARQU | Diaminopimelate epimerase |
| [B] Bartonella tribocorum (strain CIP 105476 / IBS 506) | BART101922 | DAPF_BART1 | Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase) (Q8FYF0 in Brucella suis),InterPro; Diaminopimelate epimerase hypothetical protein |
| [B] Bradyrhizobium japonicum | BRAJA00475 | DAPF_BRAJA | Diaminopimelate epimerase |
| [B] Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) | BRASB00352 | DAPF_BRASB | Diaminopimelate epimerase |
| [B] Bradyrhizobium sp. (strain ORS278) | BRASO00354 | DAPF_BRASO | Diaminopimelate epimerase |
| [B] Rhodopseudomonas palustris (strain BisB5) | RHOPS00509 | DAPF_RHOPS | Diaminopimelate epimerase |
| [B] Rhodopseudomonas palustris (strain HaA2) | RHOP200358 | DAPF_RHOP2 | diaminopimelate epimerase |
| [B] Brucella abortus | BRUAB01785 | DAPF_BRUAB | similar to BR1932, diaminopimelate epimerase DapF, diaminopimelate epimerase |
| [B] Brucella abortus (strain 2308) | BRUA201917 | DAPF_BRUA2 | Diaminopimelate epimerase |
| [B] Brucella abortus (strain S19) | BRUA101722 | DAPF_BRUA1 | Diaminopimelate epimerase |
| [B] Brucella canis (strain ATCC 23365 / NCTC 10854) | BRUC201846 | DAPF_BRUC2 | Diaminopimelate epimerase |
| [B] Brucella melitensis | BRUME00133 | DAPF_BRUME | Diaminopimelate epimerase |
| [B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) | BRUO201655 | DAPF_BRUO2 | Diaminopimelate epimerase |
| [B] Brucella suis | BRUSU01853 | DAPF_BRUSU | identified by match to PFAM protein family HMM PF02567 diaminopimelate epimerase |
| [B] Brucella suis (strain ATCC 23445 / NCTC 10510) | BRUSI01660 | DAPF_BRUSI | diaminopimelate epimerase GO_function: diaminopimelate epimerase activity [GO ID 0008837]; GO_process: lysine biosynthetic process via diaminopimelate [GO ID 0009089] |
| [B] Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) | OCHA400910 | DAPF_OCHA4 | Diaminopimelate epimerase |
| [B] Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) | METC402802 | DAPF_METC4 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase; KEGG: mex:Mext_2720 diaminopimelate epimerase |
| [B] Methylobacterium extorquens (strain PA1) | METEP02675 | DAPF_METEP | Diaminopimelate epimerase |
| [B] Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) | METPB02788 | DAPF_METPB | Diaminopimelate epimerase |
| [B] Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) | METRJ05229 | B1LY98 | Diaminopimelate epimerase |
| [B] Methylobacterium sp. (strain 4-46) | METS403420 | DAPF_METS4 | Diaminopimelate epimerase |
| [B] Mesorhizobium sp. (strain BNC1) | MESSB03355 | DAPF_MESSB | diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: bmb:BruAb1_1908 DapF, diaminopimelate epimerase |
| [B] Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) | PARL101357 | A7HT02 | Diaminopimelate epimerase |
| [B] Rhizobium meliloti | RHIME03197 | NP_387345.1 | Product confidence : probable Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD PROBABLE DIAMINOPIMELATE EPIMERASE PROTEIN |
| [B] Hyphomonas neptunium (strain ATCC 15444) | HYPNA03460 | Q0BWE3 | Diaminopimelate epimerase |
| [B] Acidiphilium cryptum (strain JF-5) | ACICJ02439 | DAPF_ACICJ | Diaminopimelate epimerase |
| [B] Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) | GRABC01499 | DAPF_GRABC | Diaminopimelate epimerase |
| [B] Rhodospirillum centenum (strain ATCC 51521 / SW) | RHOCS02131 | DAPF_RHOCS | Diaminopimelate epimerase |
| [B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) | RHORT01177 | Q2RV61 | Diaminopimelate epimerase |
| [B] Ehrlichia canis (strain Jake) | EHRCJ00026 | Q3YT78 | Diaminopimelate epimerase |
| [B] Ehrlichia chaffeensis (strain Arkansas) | EHRCR00046 | Q2GI52 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Ehrlichia ruminantium (strain Gardel) | EHRRG00021 | Q5FF25 | Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERWE_CDS_00210 Diaminopimelate epimerase |
| [B] Ehrlichia ruminantium (strain Welgevonden) | EHRRW00021 | Q5FCG3 | Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERGA_CDS_00210 Diaminopimelate epimerase |
| [B] Rickettsia bellii (strain OSU 85-389) | RICB800769 | DAPF_RICB8 | Diaminopimelate epimerase |
| [B] Rickettsia bellii (strain RML369-C) | RICBR00636 | DAPF_RICBR | Diaminopimelate epimerase |
| [B] Wolbachia sp. (subsp. Brugia malayi) (strain TRS) | WOLTR00514 | DAPF_WOLTR | Diaminopimelate epimerase |
| [B] Wolbachia sp. subsp. Drosophila simulans (strain wRi) | WOLWR00887 | DAPF_WOLWR | Diaminopimelate epimerase |
| [B] Pelagibacter ubique | PELUB00254 | DAPF_PELUB | Diaminopimelate epimerase (DAP epimerase) |
| [B] Erythrobacter litoralis (strain HTCC2594) | ERYLH00779 | DAPF_ERYLH | diaminopimelate epimerase COG0253 Diaminopimelate epimerase |
| [B] Novosphingobium aromaticivorans (strain DSM 12444) | NOVAD01393 | Q2G8H7 | Diaminopimelate epimerase |
| [B] Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) | SPHWW02896 | DAPF_SPHWW | Diaminopimelate epimerase |
| [B] Sphingopyxis alaskensis | SPHAL02697 | DAPF_SPHAL | Diaminopimelate epimerase |
| [B] Zymomonas mobilis | ZYMMO01066 | DAPF_ZYMMO | COG0253 diaminopimelate epimerase |
| [B] Bordetella avium (strain 197N) | BORA100155 | Q2L1A2 | diaminopimelate epimerase |
| [B] Bordetella bronchiseptica | BORBR00188 | Q7WQY1 | ortholog of Bordetella pertussis (BX470248) BP3074 diaminopimelate epimerase |
| [B] Bordetella parapertussis | BORPA00187 | Q7W203 | ortholog of Bordetella pertussis (BX470248) BP3074 diaminopimelate epimerase |
| [B] Bordetella pertussis | BORPE02815 | Q7VUL2 | Similar to Neisseria meningitidis putative diaminopimelate epimerase DapF or NMA0972 TR:Q9JV69 (EMBL:AL162754) (283 aa) fasta scores: E(): 7.6e-46, 50.69% id in 286 aa, and to Escherichia coli diaminopimelate epimerase DapF SW:DAPF_ECOLI (EMBL:X12968;) (274 aa) fasta scores: E(): 4.6e-23, 49.29% id in 284 aa diaminopimelate epimerase |
| [B] Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) | BORPD04702 | A9IH28 | DapF protein |
| [B] Burkholderia ambifaria (strain MC40-6) | BURA402961 | B1YPQ6 | Diaminopimelate epimerase |
| [B] Burkholderia cenocepacia (strain AU 1054) | BURCA02445 | Q1BSN5 | Diaminopimelate epimerase |
| [B] Burkholderia cenocepacia (strain HI2424) | BURCH03067 | A0KBF6 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: bcn:Bcen_2471 diaminopimelate epimerase |
| [B] Burkholderia cenocepacia (strain MC0-3) | BURCC03073 | B1K0F5 | Diaminopimelate epimerase |
| [B] Burkholderia cepacia (strain ATCC 53795 / AMMD) | BURCM03117 | DAPF_BURCM | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: bur:Bcep18194_A6435 diaminopimelate epimerase |
| [B] Burkholderia cepacia (strain J2315 / LMG 16656) | BURCJ00499 | B4E7Z8 | diaminopimelate epimerase |
| [B] Burkholderia multivorans (strain ATCC 17616 / 249) | BURM100572 | B3CVY6 | Diaminopimelate epimerase |
| [B] Burkholderia sp. (strain 383) | BURS303240 | Q39BY7 | Diaminopimelate epimerase |
| [B] Burkholderia vietnamiensis (strain G4 / LMG 22486) | BURVG03063 | DAPF_BURVG | Diaminopimelate epimerase |
| [B] Burkholderia mallei | BURMA02732 | DAPF_BURMA | Diaminopimelate epimerase |
| [B] Burkholderia mallei (strain NCTC 10229) | BURM902041 | DAPF_BURM9 | Diaminopimelate epimerase |
| [B] Burkholderia mallei (strain NCTC 10247) | BURM703212 | DAPF_BURM7 | Diaminopimelate epimerase |
| [B] Burkholderia mallei (strain SAVP1) | BURMS02741 | DAPF_BURMS | Diaminopimelate epimerase |
| [B] Burkholderia phymatum (strain DSM 17167 / STM815) | BURP800074 | DAPF_BURP8 | Diaminopimelate epimerase |
| [B] Burkholderia phytofirmans (strain DSM 17436 / PsJN) | BURPP00307 | DAPF_BURPP | Diaminopimelate epimerase |
| [B] Burkholderia pseudomallei | BURPS00207 | DAPF_BURPS | Similar to Escherichia coli diaminopimelate epimerase DapF SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 1.4e-47, 50.52% id in 285 aa, and to Ralstonia solanacearum diaminopimelate epimerase rsc0137 or rs01049 SWALL:DAPF_RALSO (SWALL:Q8Y344) (292 aa) fasta scores: E(): 1.5e-76, 68.85% id in 289 aa diaminopimelate epimerase |
| [B] Burkholderia pseudomallei (strain 1106a) | BURP000202 | DAPF_BURP0 | Diaminopimelate epimerase |
| [B] Burkholderia pseudomallei (strain 668) | BURP600194 | DAPF_BURP6 | Diaminopimelate epimerase |
| [B] Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) | BURTA00168 | DAPF_BURTA | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Burkholderia xenovorans (strain LB400) | BURXL00086 | DAPF_BURXL | Diaminopimelate epimerase |
| [B] Cupriavidus taiwanensis (strain R1 / LMG 19424) | CUPTR00170 | DAPF_CUPTR | Diaminopimelate epimerase |
| [B] Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) | RALEH00227 | DAPF_RALEH | diaminopimelate epimerase |
| [B] Ralstonia eutropha (strain JMP134) | RALEJ00197 | DAPF_RALEJ | Diaminopimelate epimerase |
| [B] Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) | RALME00151 | DAPF_RALME | diaminopimelate epimerase |
| [B] Polynucleobacter necessarius (strain STIR1) | POLNS01450 | B1XSI3 | Diaminopimelate epimerase |
| [B] Polynucleobacter sp. (strain QLW-P1DMWA-1) | POLSQ01992 | A4T0F3 | Diaminopimelate epimerase |
| [B] Ralstonia pickettii (strain 12J) | RALPJ00035 | DAPF_RALPJ | Diaminopimelate epimerase |
| [B] Ralstonia solanacearum | RALSO00136 | DAPF_RALSO | Gene name confidence : probable predicted by Codon_usage predicted by Homology predicted by FrameD DIAMINOPIMELATE EPIMERASE PROTEIN |
| [B] Acidovorax avenae subsp. citrulli (strain AAC00-1) | ACIAC00751 | DAPF_ACIAC | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pol:Bpro_1058 diaminopimelate epimerase |
| [B] Acidovorax sp. (strain JS42) | ACISJ03433 | A1WC24 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pol:Bpro_1058 diaminopimelate epimerase |
| [B] Delftia acidovorans (strain DSM 14801 / SPH-1) | DELAS01445 | A9BUI9 | Diaminopimelate epimerase |
| [B] Diaphorobacter sp. (strain TPSY) | DIAST02924 | DAPF_DIAST | Diaminopimelate epimerase |
| [B] Polaromonas naphthalenivorans (strain CJ2) | POLNA03365 | A1VSV4 | Diaminopimelate epimerase |
| [B] Polaromonas sp. (strain JS666 / ATCC BAA-500) | POLSJ01037 | Q12EN2 | Diaminopimelate epimerase |
| [B] Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) | RHOFD03374 | DAPF_RHOFD | Diaminopimelate epimerase |
| [B] Verminephrobacter eiseniae (strain EF01-2) | VEREI04424 | A1WRJ4 | Diaminopimelate epimerase |
| [B] Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) | LEPCP00128 | DAPF_LEPCP | Diaminopimelate epimerase |
| [B] Methylibium petroleiphilum (strain PM1) | METPP03191 | DAPF_METPP | Diaminopimelate epimerase |
| [B] Herminiimonas arsenicoxydans | HERAR02816 | CAL63067.1 | Diaminopimelate epimerase. Conserved domain: IPR001653 |
| [B] Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) | JANMA03200 | A6T2Z4 | Diaminopimelate epimerase |
| [B] Thiobacillus denitrificans (strain ATCC 25259) | THIDA02525 | Q3SFX7 | diaminopimelate epimerase |
| [B] Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) | METFK00196 | Q1H4X0 | Diaminopimelate epimerase |
| [B] Chromobacterium violaceum | CHRVO02522 | DAPF_CHRVO | identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0253 diaminopimelate epimerase |
| [B] Laribacter hongkongensis (strain HLHK9) | LARHH01814 | DAPF_LARHH | DapF |
| [B] Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | NEIG100309 | Q5F9Q4 | Best Blastp Hit: pir||E81161 diaminopimelate epimerase NMB0760 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225990|gb|AAF41173.1| (AE002430) diaminopimelate epimerase [Neisseria meningitidis MC58] COG0253 Diaminopimelate epimerase; DapF putative diaminopimelate epimerase |
| [B] Neisseria gonorrhoeae (strain NCCP11945) | NEIG200481 | B4RK32 | DapF |
| [B] Neisseria meningitidis serogroup A | NEIMA00862 | DAPF_NEIMA | Putative diaminopimelate epimerase |
| [B] Neisseria meningitidis serogroup B | NEIMB00718 | DAPF_NEIMB | Diaminopimelate epimerase |
| [B] Neisseria meningitidis serogroup C (strain 053442) | NEIM000676 | A9M3J3 | diaminopimelate epimerase Code: E; COG: COG0253 |
| [B] Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) | NEIMF00657 | A1KT22 | Putative diaminopimelate epimerase |
| [B] Nitrosomonas europaea | NITEU01566 | DAPF_NITEU | Diaminopimelate epimerase |
| [B] Nitrosomonas eutropha (strain C71) | NITEC00482 | DAPF_NITEC | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: neu:NE1612 diaminopimelate epimerase |
| [B] Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) | NITMU02440 | DAPF_NITMU | diaminopimelate epimerase |
| [B] Azoarcus sp. (strain BH72) | AZOSB00590 | DAPF_AZOSB | DapF protein Diaminopimelate epimerase catalyzes the isomeriazation of L,L- to D,L-meso-diaminopimelate in the biosynthetic pathway leading from aspartate to lysine. This enzyme is a protein of about 30 kDa. Two conserved cysteines seem to function as the acid and base in the catalytic mechanism. Similar to TREMBL:Q82U84 (58%). Pfam (PF01678): Diaminopimelate epimerase TIGRfam (TIGR00652): Diaminopimelate epimerase High confidence in function and specificity |
| [B] Azoarcus sp. (strain EbN1) | AZOSE02174 | DAPF_AZOSE | Diaminopimelate epimerase |
| [B] Dechloromonas aromatica (strain RCB) | DECAR00191 | DAPF_DECAR | Diaminopimelate epimerase |
| [B] Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) | PELCD03269 | Q39ZZ8 | Diaminopimelate epimerase |
| [B] Anaeromyxobacter sp. (strain K) | ANASK00601 | B4UCM0 | Diaminopimelate epimerase |
| [B] Myxococcus xanthus (strain DK 1622) | MYXXD04852 | Q1D2B4 | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) | ACIF202576 | B7J8H2 | Diaminopimelate epimerase |
| [B] Acidithiobacillus ferrooxidans (strain ATCC 53993) | ACIF502235 | B5ENS1 | Diaminopimelate epimerase |
| [B] Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) | AERHH00449 | DAPF_AERHH | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Aeromonas salmonicida (strain A449) | AERS403332 | DAPF_AERS4 | Diaminopimelate epimerase |
| [B] Alteromonas macleodii (strain DSM 17117 / Deep ecotype) | ALTMD00202 | B4S2D9 | Diaminopimelate epimerase |
| [B] Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) | MARAV00457 | A1TXX7 | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: hch:HCH_00298 diaminopimelate epimerase |
| [B] Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) | SACD200237 | DAPF_SACD2 | Diaminopimelate epimerase |
| [B] Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | COLP300060 | DAPF_COLP3 | identified by similarity to SP:P46357; match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Idiomarina loihiensis | IDILO02524 | DAPF_IDILO | Diaminopimelate epimerase |
| [B] Pseudoalteromonas atlantica (strain T6c / BAA-1087) | PSEA604030 | DAPF_PSEA6 | Diaminopimelate epimerase |
| [B] Pseudoalteromonas haloplanktis (strain TAC 125) | PSEHT00087 | DAPF_PSEHT | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3283102, 3031013; Product type e : enzyme diaminopimelate epimerase |
| [B] Psychromonas ingrahamii (strain 37) | PSYIN00037 | DAPF_PSYIN | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: pat:Patl_4074 diaminopimelate epimerase |
| [B] Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) | SHEAM03232 | DAPF_SHEAM | Diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| [B] Shewanella baltica (strain OS155 / ATCC BAA-1091) | SHEB503669 | DAPF_SHEB5 | Diaminopimelate epimerase |
| [B] Shewanella baltica (strain OS185) | SHEB803895 | DAPF_SHEB8 | Diaminopimelate epimerase |
| [B] Shewanella baltica (strain OS195) | SHEB904007 | DAPF_SHEB9 | PFAM: diaminopimelate epimerase KEGG: shw:Sputw3181_3721 diaminopimelate epimerase Diaminopimelate epimerase |
| [B] Shewanella baltica (strain OS223) | SHEB203783 | DAPF_SHEB2 | Diaminopimelate epimerase |
| [B] Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) | SHEDO00386 | DAPF_SHEDO | Diaminopimelate epimerase |
| [B] Shewanella frigidimarina (strain NCIMB 400) | SHEFN00441 | DAPF_SHEFN | Diaminopimelate epimerase |
| [B] Shewanella halifaxensis (strain HAW-EB4) | SHEHH03874 | B0TJ49 | Diaminopimelate epimerase |
| [B] Shewanella loihica (strain BAA-1088 / PV-4) | SHELP00322 | DAPF_SHELP | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| [B] Shewanella oneidensis | SHEON04028 | DAPF_SHEON | Diaminopimelate epimerase |
| [B] Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) | SHEPA00371 | A8GZG9 | PFAM: diaminopimelate epimerase KEGG: sfr:Sfri_0445 diaminopimelate epimerase Diaminopimelate epimerase |
| [B] Shewanella piezotolerans (strain WP3 / JCM 13877) | SHEPW00386 | B8CHW4 | Diaminopimelate epimerase |
| [B] Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) | SHEPC03531 | DAPF_SHEPC | Diaminopimelate epimerase |
| [B] Shewanella sediminis (strain HAW-EB3) | SHESH04116 | DAPF_SHESH | KEGG: slo:Shew_0323 diaminopimelate epimerase Diaminopimelate epimerase |
| [B] Shewanella sp. (strain ANA-3) | SHESA00386 | DAPF_SHESA | diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: son:SO4308 diaminopimelate epimerase |
| [B] Shewanella sp. (strain MR-4) | SHESM00390 | DAPF_SHESM | Diaminopimelate epimerase |
| [B] Shewanella sp. (strain MR-7) | SHESR03596 | DAPF_SHESR | Diaminopimelate epimerase |
| [B] Shewanella sp. (strain W3-18-1) | SHESW03638 | DAPF_SHESW | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: shm:Shewmr7_3633 diaminopimelate epimerase |
| [B] Shewanella woodyi (strain ATCC 51908 / MS32) | SHEWM00481 | DAPF_SHEWM | Diaminopimelate epimerase |
| [B] Baumannia cicadellinicola (subsp. Homalodisca coagulata) | BAUCH00115 | DAPF_BAUCH | diaminopimelate epimerase identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 |
| [B] Dichelobacter nodosus (strain VCS1703A) | DICNV00039 | A5EWY0 | Diaminopimelate epimerase |
| [B] Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) | NITOC00286 | DAPF_NITOC | Diaminopimelate epimerase |
| [B] Alkalilimnicola ehrlichei (strain MLHE-1) | ALHEH00059 | DAPF_ALHEH | Diaminopimelate epimerase |
| [B] Halorhodospira halophila (strain DSM 244 / SL1) | HALHL01178 | DAPF_HALHL | Diaminopimelate epimerase |
| [B] Thioalkalivibrio sp. (strain HL-EbGR7) | THISH00042 | DAPF_THISH | Diaminopimelate epimerase |
| [B] Buchnera aphidicola (subsp. Acyrthosiphon pisum) | BUCAI00550 | DAPF_BUCAI | diaminopimelate epimerase |
| [B] Buchnera aphidicola (subsp. Baizongia pistaciae) | BUCBP00491 | DAPF_BUCBP | COG0253; DAP epimerase diaminopimelate epimerase |
| [B] Buchnera aphidicola (subsp. Schizaphis graminum) | BUCAP00533 | NP_660893.2 | diaminopimelate epimerase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) | BUCA500541 | DAPF_BUCA5 | Diaminopimelate epimerase |
| [B] Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) | BUCAT00539 | DAPF_BUCAT | Diaminopimelate epimerase |
| [B] Buchnera aphidicola subsp. Cinara cedri | BUCCC00347 | Q056W9 | diaminopimelate epimerase COG_category E;COG_number COG0253; DapF |
| [B] Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) | CITK800140 | A8ACV7 | Putative uncharacterized protein |
| [B] Enterobacter sakazakii (strain ATCC BAA-894) | ENTS803615 | DAPF_ENTS8 | Putative uncharacterized protein |
| [B] Enterobacter sp. (strain 638) | ENT3803946 | DAPF_ENT38 | Diaminopimelate epimerase |
| [B] Erwinia tasmaniensis (strain DSM 17950 / ET1/99) | ERWT900215 | DAPF_ERWT9 | Diaminopimelate epimerase |
| [B] Escherichia coli (strain 55989 / EAEC) | ECO5504118 | DAPF_ECO55 | Diaminopimelate epimerase |
| [B] Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) | ECOLC04078 | DAPF_ECOLC | Diaminopimelate epimerase |
| [B] Escherichia coli (strain DH10B) | ECODH03548 | DAPF_ECODH | Diaminopimelate epimerase |
| [B] Escherichia coli (strain K12) | ECOLI03680 | DAPF_ECOLI | Diaminopimelate epimerase |
| [B] Escherichia coli (strain SE11) | ECOSE04079 | B6I4F0 | Diaminopimelate epimerase |
| [B] Escherichia coli (strain SMS-3-5 / SECEC) | ECOSM03985 | DAPF_ECOSM | Diaminopimelate epimerase |
| [B] Escherichia coli (strain UTI89 / UPEC) | ECOUT04263 | Q1R4C5 | diaminopimelate epimerase |
| [B] Escherichia coli O127:H6 (strain E2348/69 / EPEC) | ECO2704044 | DAPF_ECO27 | Diaminopimelate epimerase |
| [B] Escherichia coli O139:H28 (strain E24377A / ETEC) | ECO2404077 | DAPF_ECO24 | Diaminopimelate epimerase |
| [B] Escherichia coli O157:H7 | ECO5704528 | DAPF_ECO57 | Residues 1 to 275 of 275 are 100.00 pct identical to residues 1 to 275 of 275 from Escherichia coli K-12 Strain MG1655: B3809 diaminopimelate epimerase |
| [B] Escherichia coli O157:H7 (strain EC4115 / EHEC) | ECO5E04514 | DAPF_ECO5E | Diaminopimelate epimerase |
| [B] Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) | ECOLU04204 | DAPF_ECOLU | Diaminopimelate epimerase |
| [B] Escherichia coli O1:K1 / APEC | ECOK103759 | A1AHX7 | diaminopimelate epimerase |
| [B] Escherichia coli O45:K1 (strain S88 / ExPEC) | ECO4504023 | DAPF_ECO45 | Diaminopimelate epimerase |
| [B] Escherichia coli O6 | ECOL604589 | DAPF_ECOL6 | Diaminopimelate epimerase |
| [B] Escherichia coli O6:K15:H31 (strain 536) | ECOL503931 | DAPF_ECOL5 | diaminopimelate epimerase |
| [B] Escherichia coli O7:K1 (strain IAI39 / ExPEC) | ECO7I02812 | DAPF_ECO7I | Diaminopimelate epimerase |
| [B] Escherichia coli O81 (strain ED1a) | ECO8104256 | DAPF_ECO81 | Diaminopimelate epimerase |
| [B] Escherichia coli O9:H4 (strain HS) | ECOHS03749 | DAPF_ECOHS | Diaminopimelate epimerase |
| [B] Klebsiella pneumoniae (strain 342) | KLEP305216 | B5XYK7 | Diaminopimelate epimerase |
| [B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) | KLEP704233 | A6TGJ2 | Diaminopimelate epimerase |
| [B] Erwinia carotovora (subsp. atroseptica) | ERWCT04146 | DAPF_ERWCT | Similar to Escherichia coli diaminopimelate epimerase DapF or b3809 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3e-99, 87.22% id in 274 aa diaminopimelate epimerase |
| [B] Photorhabdus luminescens (subsp. laumondii) | PHOLL04487 | DAPF_PHOLL | diaminopimelate epimerase (DAP epimerase) |
| [B] Proteus mirabilis (strain HI4320) | PROMH03302 | DAPF_PROMH | Diaminopimelate epimerase |
| [B] Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) | SALAR03550 | A9MJ06 | Putative uncharacterized protein |
| [B] Salmonella agona (strain SL483) | SALA403871 | DAPF_SALA4 | Diaminopimelate epimerase |
| [B] Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 | SALCH03786 | Q57HR0 | IPR001653: Diaminopimelate epimerase diaminopimelate epimerase |
| [B] Salmonella dublin (strain CT_02021853) | SALDC03912 | DAPF_SALDC | Diaminopimelate epimerase |
| [B] Salmonella enteritidis PT4 (strain P125109) | SALEP03715 | B5QW52 | Diaminopimelate epimerase |
| [B] Salmonella gallinarum (strain 287/91 / NCTC 13346) | SALG203366 | B5RFP9 | Diaminopimelate epimerase |
| [B] Salmonella heidelberg (strain SL476) | SALHS03969 | DAPF_SALHS | Diaminopimelate epimerase |
| [B] Salmonella newport (strain SL254) | SALNS03938 | DAPF_SALNS | Diaminopimelate epimerase |
| [B] Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) | SALPB04713 | DAPF_SALPB | Putative uncharacterized protein |
| [B] Salmonella paratyphi A (strain AKU_12601) | SALPK03679 | DAPF_SALPK | Diaminopimelate epimerase |
| [B] Salmonella paratyphi-a | SALPA03509 | DAPF_SALPA | similar to Salmonella typhi CT18 diaminopimelate epimerase diaminopimelate epimerase |
| [B] Salmonella schwarzengrund (strain CVM19633) | SALSV03852 | DAPF_SALSV | Diaminopimelate epimerase |
| [B] Salmonella typhi | SALTI03290 | DAPF_SALTI | Diaminopimelate epimerase |
| [B] Salmonella typhimurium | SALTY03775 | DAPF_SALTY | similar to Escherichia coli diaminopimelate epimerase (AAC76812.1) diaminopimelate epimerase |
| [B] Serratia proteamaculans (strain 568) | SERP500182 | DAPF_SERP5 | Diaminopimelate epimerase |
| [B] Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) | SHIB303316 | DAPF_SHIB3 | Diaminopimelate epimerase |
| [B] Shigella boydii serotype 4 (strain Sb227) | SHIBS03167 | Q31UH9 | Code: E; COG: COG0253 diaminopimelate epimerase |
| [B] Shigella dysenteriae serotype 1 (strain Sd197) | SHIDS03073 | Q329Y5 | Code: E; COG: COG0253 diaminopimelate epimerase |
| [B] Shigella flexneri | SHIFL03508 | Q83PH3 | Residues 1 to 275 of 275 are 99 pct identical to residues 1 to 275 of a 275 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290438.1 diaminopimelate epimerase |
| [B] Shigella flexneri serotype 5b (strain 8401) | SHIF803184 | DAPF_SHIF8 | diaminopimelate epimerase Code: E; COG: COG0253 |
| [B] Shigella sonnei (strain Ss046) | SHISS03299 | Q3YVF7 | Code: E; COG: COG0253 diaminopimelate epimerase |
| [B] Sodalis glossinidius (strain morsitans) | SODGM02312 | DAPF_SODGM | diaminopimelate epimerase |
| [B] Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) | YERE800181 | DAPF_YERE8 | Diaminopimelate epimerase |
| [B] Yersinia pestis | YERPE03546 | DAPF_YERPE | Diaminopimelate epimerase |
| [B] Yersinia pestis (biovar Antiqua strain Antiqua) | YERPA00166 | DAPF_YERPA | Diaminopimelate epimerase |
| [B] Yersinia pestis (biovar Antiqua strain Nepal516) | YERPN00116 | DAPF_YERPN | Diaminopimelate epimerase |
| [B] Yersinia pestis (strain Pestoides F) | YERPP03274 | DAPF_YERPP | Diaminopimelate epimerase |
| [B] Yersinia pestis bv. Antiqua (strain Angola) | YERPG00453 | DAPF_YERPG | Diaminopimelate epimerase |
| [B] Yersinia pseudotuberculosis | YERPS00189 | DAPF_YERPS | Diaminopimelate epimerase |
| [B] Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) | YERP300196 | DAPF_YERP3 | Diaminopimelate epimerase |
| [B] Yersinia pseudotuberculosis serotype IB (strain PB1/+) | YERPB00197 | DAPF_YERPB | Diaminopimelate epimerase |
| [B] Yersinia pseudotuberculosis serotype O:3 (strain YPIII) | YERPY03937 | DAPF_YERPY | Diaminopimelate epimerase |
| [B] Blochmannia pennsylvanicus (strain BPEN) | BLOPB00560 | DAPF_BLOPB | ortholog to Escherichia coli bnum: b3809; MultiFun: Metabolism 1.5.1.7 diaminopimelate epimerase |
| [B] Coxiella burnetii | COXBU01865 | DAPF_COXBU | similar to SP:P08885; identified by sequence similarity; putative diaminopimelate epimerase |
| [B] Coxiella burnetii (strain CbuG_Q212) | COXB201717 | DAPF_COXB2 | Diaminopimelate epimerase |
| [B] Coxiella burnetii (strain Dugway 5J108-111) | COXBN01923 | DAPF_COXBN | Diaminopimelate epimerase |
| [B] Coxiella burnetii (strain RSA 331 / Henzerling II) | COXBR00100 | DAPF_COXBR | Diaminopimelate epimerase |
| [B] Legionella pneumophila (strain Corby) | LEGPC02878 | DAPF_LEGPC | Diaminopimelate epimerase |
| [B] Legionella pneumophila (strain Lens) | LEGPL00402 | DAPF_LEGPL | Diaminopimelate epimerase |
| [B] Legionella pneumophila (strain Paris) | LEGPA00428 | DAPF_LEGPA | Diaminopimelate epimerase |
| [B] Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152) | LEGPH00348 | DAPF_LEGPH | conserved gene diaminopimelate epimerase |
| [B] Methylococcus capsulatus | METCA00806 | Q60AJ4 | identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) | ALCBS02330 | DAPF_ALCBS | Diaminopimelate epimerase |
| [B] Hahella chejuensis (strain KCTC 2396) | HAHCH00285 | DAPF_HAHCH | diaminopimelate epimerase TIGRFAMsMatches:TIGR00652 |
| [B] Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) | CHRSD03092 | DAPF_CHRSD | Diaminopimelate epimerase |
| [B] Marinomonas sp. (strain MWYL1) | MARMS03522 | A6W1B0 | Diaminopimelate epimerase |
| [B] Actinobacillus pleuropneumoniae serotype 3 (strain JL03) | ACTPJ01495 | DAPF_ACTPJ | Diaminopimelate epimerase |
| [B] Actinobacillus pleuropneumoniae serotype 5b (strain L20) | ACTP201497 | DAPF_ACTP2 | Diaminopimelate epimerase |
| [B] Actinobacillus pleuropneumoniae serotype 7 (strain AP76) | ACTP701562 | DAPF_ACTP7 | Diaminopimelate epimerase |
| [B] Actinobacillus succinogenes (strain ATCC 55618 / 130Z) | ACTSZ01931 | DAPF_ACTSZ | Diaminopimelate epimerase |
| [B] Haemophilus ducreyi | HAEDU00020 | DAPF_HAEDU | diaminopimelate epimerase |
| [B] Haemophilus influenzae | HAEIN00734 | DAPF_HAEIN | Diaminopimelate epimerase |
| [B] Haemophilus influenzae (strain 86-028NP) | HAEI800793 | DAPF_HAEI8 | DAP epimerase; Similar to: HI0750, DAPF_HAEIN diaminopimelate epimerase |
| [B] Haemophilus influenzae (strain PittEE) | HAEIE01468 | DAPF_HAEIE | Diaminopimelate epimerase |
| [B] Haemophilus influenzae (strain PittGG) | HAEIG01179 | DAPF_HAEIG | Diaminopimelate epimerase |
| [B] Haemophilus parasuis serovar 5 (strain SH0165) | HAEPS01796 | DAPF_HAEPS | Diaminopimelate epimerase |
| [B] Haemophilus somnus (strain 129PT) | HAES101606 | DAPF_HAES1 | Diaminopimelate epimerase |
| [B] Haemophilus somnus (strain 2336) | HAES200393 | DAPF_HAES2 | Diaminopimelate epimerase |
| [B] Mannheimia succiniciproducens (strain MBEL55E) | MANSM01778 | DAPF_MANSM | Diaminopimelate epimerase DapF protein |
| [B] Pasteurella multocida | PASMU01703 | DAPF_PASMU | Diaminopimelate epimerase |
| [B] Acinetobacter baumannii (strain AB0057) | ACIB502883 | DAPF_ACIB5 | Diaminopimelate epimerase |
| [B] Acinetobacter baumannii (strain AB307-0294) | ACIB300815 | DAPF_ACIB3 | Diaminopimelate epimerase |
| [B] Acinetobacter baumannii (strain ACICU) | ACIBC02865 | DAPF_ACIBC | Diaminopimelate epimerase |
| [B] Acinetobacter baumannii (strain AYE) | ACIBY00814 | DAPF_ACIBY | Diaminopimelate epimerase |
| [B] Acinetobacter baumannii (strain SDF) | ACIBS00718 | DAPF_ACIBS | Diaminopimelate epimerase |
| [B] Acinetobacter sp. (strain ADP1) | ACIAD02412 | DAPF_ACIAD | Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme diaminopimelate epimerase |
| [B] Psychrobacter arcticus (strain DSM 17307 / 273-4) | PSYA200198 | DAPF_PSYA2 | Diaminopimelate epimerase |
| [B] Psychrobacter cryohalolentis (strain K5) | PSYCK00220 | DAPF_PSYCK | Diaminopimelate epimerase |
| [B] Psychrobacter sp. (strain PRwf-1) | PSYWF00340 | DAPF_PSYWF | Diaminopimelate epimerase |
| [B] Cellvibrio japonicus (strain Ueda107) | CELJU03183 | DAPF_CELJU | Diaminopimelate epimerase |
| [B] Pseudomonas aeruginosa | PSEAE05265 | DAPF_PSEAE | Diaminopimelate epimerase |
| [B] Pseudomonas aeruginosa (strain LESB58) | PSEA805645 | DAPF_PSEA8 | Diaminopimelate epimerase |
| [B] Pseudomonas aeruginosa (strain PA7) | PSEA705901 | DAPF_PSEA7 | Diaminopimelate epimerase |
| [B] Pseudomonas aeruginosa (strain UCBPP-PA14) | PSEAB05591 | DAPF_PSEAB | diaminopimelate epimerase |
| [B] Pseudomonas entomophila (strain L48) | PSEE404978 | DAPF_PSEE4 | diaminopimelate epimerase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme |
| [B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | PSEF505917 | Q4K3W2 | identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Pseudomonas fluorescens (strain PfO-1) | PSEPF05484 | DAPF_PSEPF | Diaminopimelate epimerase |
| [B] Pseudomonas mendocina (strain ymp) | PSEMY00263 | DAPF_PSEMY | Diaminopimelate epimerase |
| [B] Pseudomonas putida (strain F1 / ATCC 700007) | PSEP105071 | A5WAU5 | Diaminopimelate epimerase |
| [B] Pseudomonas putida (strain GB-1) | PSEPG05241 | DAPF_PSEPG | Diaminopimelate epimerase unknown EC_number=5.1.1.7 PFAM: diaminopimelate epimerase KEGG: pen:PSEEN5366 diaminopimelate epimerase |
| [B] Pseudomonas putida (strain KT2440) | PSEPK05118 | NP_747329.1 | similar to SP:P08885; identified by sequence similarity; putative diaminopimelate epimerase |
| [B] Pseudomonas putida (strain W619) | PSEPW00244 | DAPF_PSEPW | Diaminopimelate epimerase |
| [B] Pseudomonas stutzeri (strain A1501) | PSEU500505 | DAPF_PSEU5 | Diaminopimelate epimerase |
| [B] Pseudomonas syringae (pv. tomato) | PSESM00201 | DAPF_PSESM | identified by match to PFAM protein family HMM PF04303 diaminopimelate epimerase |
| [B] Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | PSE1404678 | DAPF_PSE14 | identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase |
| [B] Pseudomonas syringae pv. syringae (strain B728a) | PSEU200181 | DAPF_PSEU2 | Diaminopimelate epimerase |
| [B] Thiomicrospira crunogena (strain XCL-2) | THICR00403 | Q31IM2 | diaminopimelate epimerase |
| [B] Aliivibrio salmonicida (strain LFI1238) | ALISL00109 | DAPF_ALISL | Diaminopimelate epimerase |
| [B] Photobacterium profundum | PHOPR03224 | DAPF_PHOPR | putative ribulose-phosphate 3-epimerase |
| [B] Vibrio cholerae | VIBCH00125 | A3GZK8 | similar to GB:M87049 SP:P08885 GB:X12968 PID:148208 PID:41237; identified by sequence similarity; putative diaminopimelate epimerase |
| [B] Vibrio cholerae (strain ATCC 39541 / O395) | VIBC302238 | DAPF_VIBC3 | Diaminopimelate epimerase |
| [B] Vibrio cholerae serotype O1 (strain M66-2) | VIBCM00125 | C3LPW8 | |
| [B] Vibrio fischeri (strain ATCC 700601 / ES114) | VIBF102476 | DAPF_VIBF1 | diaminopimelate epimerase |
| [B] Vibrio harveyi (strain ATCC BAA-1116 / BB120) | VIBHB00251 | DAPF_VIBHB | Putative uncharacterized protein |
| [B] Vibrio parahaemolyticus | VIBPA02977 | DAPF_VIBPA | similar to GB:AAF93303.1 (AE004103) percent identity 87 in 276 aa diaminopimelate epimerase |
| [B] Vibrio splendidus (strain LGP32) | VIBSL02846 | DAPF_VIBSL | Diaminopimelate epimerase |
| [B] Vibrio vulnificus | VIBVU01029 | NP_760075.1 | COG0253 Diaminopimelate epimerase |
| [B] Vibrio vulnificus (strain YJ016) | VIBVY00087 | DAPF_VIBVY | Diaminopimelate epimerase |
| [B] Stenotrophomonas maltophilia (strain K279a) | STRMK03823 | B2FUW0 | Putative diaminopimelate epimerase |
| [B] Stenotrophomonas maltophilia (strain R551-3) | STRM503457 | B4SJN4 | Diaminopimelate epimerase |
| [B] Xanthomonas axonopodis (pv. citri) | XANAC00622 | NP_640987.1 | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark diaminopimelate epimerase |
| [B] Xanthomonas campestris pv. campestris | XANCP03399 | DAPF_XANCP | Diaminopimelate epimerase |
| [B] Xanthomonas campestris pv. campestris (strain 8004) | XANC800638 | DAPF_XANC8 | diaminopimelate epimerase |
| [B] Xanthomonas campestris pv. campestris (strain B100) | XANCB00690 | DAPF_XANCB | DapF protein |
| [B] Xanthomonas campestris pv. vesicatoria (strain 85-10) | XANC500673 | DAPF_XANC5 | Diaminopimelate epimerase |
| [B] Xanthomonas oryzae (pv. oryzae) | XANOR03582 | Q5GVM2 | identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Diaminopimelate epimerase |
| [B] Xanthomonas oryzae pv. oryzae (strain MAFF 311018) | XANOM03463 | DAPF_XANOM | diaminopimelate epimerase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker |
| [B] Xanthomonas oryzae pv. oryzae (strain PXO99A) | XANOP00807 | B2SMW6 | Diaminopimelate epimerase |
| [B] Xylella fastidiosa | XYLFA01474 | DAPF_XYLFA | similar to GI|1790242 (percent identity: 45 %/query alignment coverage: 95.8 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder diaminopimelate epimerase |
| [B] Xylella fastidiosa (strain M12) | XYLFM00720 | DAPF_XYLFM | Diaminopimelate epimerase |
| [B] Xylella fastidiosa (strain M23) | XYLF200698 | DAPF_XYLF2 | Diaminopimelate epimerase |
| [B] Xylella fastidiosa (strain Temecula1 / ATCC 700964) | XYLFT00652 | DAPF_XYLFT | Diaminopimelate epimerase |
| [B] Ruthia magnifica subsp. Calyptogena magnifica | RUTMC00498 | DAPF_RUTMC | Diaminopimelate epimerase |
| [B] Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) | VESOH00485 | DAPF_VESOH | Diaminopimelate epimerase |
| [B] Magnetococcus sp. (strain MC-1) | MAGSM03568 | DAPF_MAGSM | Diaminopimelate epimerase PFAM: diaminopimelate epimerase KEGG: rru:Rru_A1183 diaminopimelate epimerase |
| [B] Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) | LEPBP00576 | B0SJ91 | Diaminopimelate epimerase |
| [B] Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) | LEPBA00553 | DAPF_LEPBA | Diaminopimelate epimerase |
| [B] Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) | LEPBJ00063 | DAPF_LEPBJ | Diaminopimelate epimerase cytoplasmic protein |
| [B] Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) | LEPBL02623 | DAPF_LEPBL | Diaminopimelate epimerase cytoplasmic protein |
| [B] Leptospira interrogans | LEPIN00083 | DAPF_LEPIN | Diaminopimelate epimerase |
| [B] Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni) | LEPIC00074 | DAPF_LEPIC | identified by sequence similarity; putative; ORF located using Blastx/Glimmer diaminopimelate epimerase |
| [B] Elusimicrobium minutum (strain Pei191) | ELUMP01000 | DAPF_ELUMP | Diaminopimelate epimerase |