List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 57207

branched-chain amino acid ABC transporter
This group has 22 members: 2 [A]rchaea 20 [B]acteria
Fingerprint: FEPEGYT

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Halobacterium salinariumHALSA01411  UniProtKB/TrEMBL Q9HP09  Vng1857c
[A] Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)HALS301464  UniProtKB/TrEMBL B0R6I5  Chemotactic signal transduction system periplasmic substrate-binding protein basB
[B] Brucella melitensisBRUME00263  UniProtKB/Swiss-Prot LIVB1_BRUME  Leu/Ile/Val-binding protein homolog 1 precursor
[B] Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)BRUO201529  UniProtKB/TrEMBL A5VSC9  Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
[B] Brucella suisBRUSU01714  UniProtKB/Swiss-Prot LIVB1_BRUSU  similar to GP:15157600, and SP:P04816; identified by sequence similarity; putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
[B] Brucella suis (strain ATCC 23445 / NCTC 10510)BRUSI03058  UniProtKB/TrEMBL A9WWR0  Hypothetical protein, conserved
[B] Rhizobium melilotiRHIME02453  UniProtKB/TrEMBL Q926C5  Product confidence : putative Gene name confidence : putative predicted by Codon_usage predicted by Homology predicted by FrameD PUTATIVE LEUCINE-SPECIFIC BINDING PROTEIN PRECURSOR
[B] Sinorhizobium medicae (strain WSM419)SINMW02342  UniProtKB/TrEMBL A6UC44  Extracellular ligand-binding receptor precursor
[B] Enterobacter sp. (strain 638)ENT3802468  UniProtKB/TrEMBL A4WBT0  Extracellular ligand-binding receptor precursor
[B] Klebsiella pneumoniae (strain 342)KLEP301970  UniProtKB/TrEMBL B5XW00  Hydrophobic amino acid ABC transporter, periplasmic amino acid-binding protein
[B] Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)KLEP702245  UniProtKB/TrEMBL A6TAU6  High-affinity branched-chain amino acid transport protein
[B] Serratia proteamaculans (strain 568)SERP503179  UniProtKB/TrEMBL A8GGR1  Extracellular ligand-binding receptor precursor
[B] Pseudomonas aeruginosaPSEAE04900  UniProtKB/TrEMBL A3L2Y0  Probable binding protein component of ABC transporter
[B] Pseudomonas aeruginosa (strain LESB58)PSEA805271  UniProtKB/TrEMBL B7V1X6  Probable binding protein component of ABC transporter
[B] Pseudomonas aeruginosa (strain PA7)PSEA705523  UniProtKB/TrEMBL A6VD24  Probable binding protein component of ABC transporter
[B] Pseudomonas aeruginosa (strain UCBPP-PA14)PSEAB05220  UniProtKB/TrEMBL Q02FA5  putative binding protein component of ABC transporter
[B] Pseudomonas entomophila (strain L48)PSEE404560  UniProtKB/TrEMBL Q1I471  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein Evidence 2b : Function of strongly homologous gene; Product type t : transporter
[B] Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)PSEF500588  UniProtKB/TrEMBL Q4KJ43  identified by match to protein family HMM PF01094 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
[B] Pseudomonas putida (strain F1 / ATCC 700007)PSEP104681  UniProtKB/TrEMBL A5W9Q5  Extracellular ligand-binding receptor precursor
[B] Pseudomonas putida (strain GB-1)PSEPG04878  UniProtKB/TrEMBL B0KKX2  Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor KEGG: pen:PSEEN4917 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
[B] Pseudomonas putida (strain KT2440)PSEPK04762  UniProtKB/TrEMBL Q88DF8  identified by match to PFAM protein family HMM PF01094 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
[B] Pseudomonas putida (strain W619)PSEPW04631  UniProtKB/TrEMBL B1J647  Extracellular ligand-binding receptor precursor