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Keyword Protein Sequence Group Entry

OMA Group 220452

ribonuclease PH
This group has 72 members: 13 [A]rchaea 59 [B]acteria
Fingerprint: VEFGGTK

Protein List | Alignment | Close Groups | Ontology Download: download fasta, download darwin

[A] Sulfolobus islandicus (strain L.D.8.5 / Lassen #2)SULID01465  UniProtKB/TrEMBL D2PC57  Exosome complex exonuclease 1
[A] Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)SULIM01258  UniProtKB/TrEMBL C3MVG4  
[A] Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)VULDI00811  UniProtKB/TrEMBL E1QP55  Probable exosome complex exonuclease 1
[A] Vulcanisaeta moutnovskia (strain 768-28)VULM701665  UniProtKB/TrEMBL F0QUH5  exosome complex exonuclease 1
[A] Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)ARCFU00481  UniProtKB/Swiss-Prot RRP41_ARCFU  Probable exosome complex exonuclease 1
[A] Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)ARCPA00500  UniProtKB/TrEMBL D2RH03  Exosome complex exonuclease 1
[A] Archaeoglobus veneficus (strain DSM 11195 / SNP6)ARCVS01001  UniProtKB/TrEMBL F2KT32  exosome complex exonuclease 1 COGs: COG0689 RNase PH; HAMAP: Exoribonuclease, exosome complex; InterPro IPR011807: IPR001247: IPR015847; KEGG: apo:Arcpr_0512 exosome complex exonuclease 1; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; SPTR: Probable exosome complex exonuclease 1; TIGRFAM: Exoribonuclease, exosome complex; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: archaeal exosome-like complex exonuclease 1
[A] Methanobacterium sp. (strain AL-21)METSL02147  UniProtKB/TrEMBL F0TCD3  
[A] Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)METST01204  UniProtKB/TrEMBL Q2NEX5  putative exosome complex, exonuclease 1 subunit COG0689, pfam01138, pfam03725
[A] Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg)METTM01052  UniProtKB/TrEMBL D9PWR6  Probable exosome complex exonuclease 1
[A] Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)METTH00678  UniProtKB/Swiss-Prot RRP41_METTH  Probable exosome complex exonuclease 1
[A] Uncultured methanogenic archaeon RC-IUNCMA00984  UniProtKB/TrEMBL Q0W2Y8  putative exosome complex exonuclease 1
[A] Cenarchaeum symbiosum (strain A)CENSY01502  UniProtKB/Swiss-Prot RRP41_CENSY  RNase PH
[B] Koribacter versatilis (strain Ellin345)KORVE01612  UniProtKB/TrEMBL Q1IR82  ribonuclease PH
[B] Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125)MOBCV00087  UniProtKB/TrEMBL D6ZI57  ribonuclease PH COG: COG0689; Pfam: PF01138,PF03725; InterPro: IPR002381
[B] Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897)CATAD07417  UniProtKB/TrEMBL C7QB87  Ribonuclease PH
[B] Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)CORA702065  UniProtKB/TrEMBL C3PIN6  Ribonuclease PH
[B] Corynebacterium diphtheriae (strain ATCC 27012 / C7 (beta))CORD701789  UniProtKB/TrEMBL H2GWL9  ribonuclease PH
[B] Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)CORDI01803  UniProtKB/Swiss-Prot RNPH_CORDI  Ribonuclease PH
[B] Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)COREF02346  UniProtKB/Swiss-Prot RNPH_COREF  similar to U00014-5|AAA50880.1| percent identity: 64 in 238 aa putative ribonuclease
[B] Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)CORGL02492  UniProtKB/Swiss-Prot RNPH_CORGL  Ribonuclease PH
[B] Corynebacterium jeikeium (strain K411)CORJK00470  UniProtKB/TrEMBL Q4JX02  ribonuclease PH
[B] Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)CORK401341  UniProtKB/Swiss-Prot RNPH_CORK4  Ribonuclease PH
[B] Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026)CORRG00424  UniProtKB/TrEMBL F8DY56  ribonuclease PH RNase PH
[B] Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667)GORB401826  UniProtKB/TrEMBL D0L9N7  Ribonuclease PH
[B] Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)AMYSD03602  UniProtKB/TrEMBL F6ES59  Ribonuclease PH
[B] Mycobacterium avium (strain 104)MYCA101469  UniProtKB/Swiss-Prot RNPH_MYCA1  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
[B] Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)MYCPA02396  UniProtKB/Swiss-Prot RNPH_MYCPA  Ribonuclease PH
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI02275  UniProtKB/Swiss-Prot RNPH_MYCGI  ribonuclease PH TIGRFAM: ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH
[B] Mycobacterium leprae (strain Br4923)MYCLB01161  UniProtKB/Swiss-Prot RNPH_MYCLB  Ribonuclease PH
[B] Mycobacterium marinum (strain ATCC BAA-535 / M)MYCMM03947  UniProtKB/TrEMBL B2HQF7  Ribonuclease RphA
[B] Mycobacterium sp. (strain KMS)MYCSK03825  UniProtKB/Swiss-Prot RNPH_MYCSK  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)MYCBO01369  UniProtKB/Swiss-Prot RNPH_MYCBO  Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC, highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY. PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP04137  UniProtKB/Swiss-Prot RNPH_MYCVP  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Nocardia farcinica (strain IFM 10152)NOCFA01102  UniProtKB/Swiss-Prot RNPH_NOCFA  Ribonuclease PH
[B] Rhodococcus equi (strain 103S)RHOE101698  UniProtKB/TrEMBL E4WG05  Ribonuclease PH
[B] Rhodococcus opacus (strain B4)RHOOB01141  UniProtKB/TrEMBL C1AVV8  Ribonuclease PH
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101680  UniProtKB/TrEMBL A0LVJ6  ribonuclease PH KEGG: sco:SCO2904 putative ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Blastococcus saxobsidens (strain DD2)BLASD01103  UniProtKB/TrEMBL H6RW99  RNase PH Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1512253; Product type e : enzyme
[B] Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104)NAKMY01609  UniProtKB/TrEMBL C8XFY0  Ribonuclease PH
[B] Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)BEUC102713  UniProtKB/TrEMBL C5BY79  Ribonuclease PH
[B] Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)CELFA01344  UniProtKB/TrEMBL F4H518  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134)CELFN01301  UniProtKB/TrEMBL D5UCB0  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: bcv:Bcav_2734 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078)CELGA02186  UniProtKB/TrEMBL F8A0P6  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860)BRAFD01922  UniProtKB/TrEMBL C7ME06  RNAse PH
[B] Leifsonia xyli subsp. xyli (strain CTCB07)LEIXX01062  UniProtKB/Swiss-Prot RNPH_LEIXX  Ribonuclease PH
[B] Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117)ARTAR01234  UniProtKB/TrEMBL E1VV50  tRNA nucleotidyltransferase removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
[B] Arthrobacter sp. (strain FB24)ARTS202554  UniProtKB/TrEMBL A0JY40  ribonuclease PH KEGG: lxx:Lxx13580 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)KOCRD00998  UniProtKB/TrEMBL B2GM08  Ribonuclease PH
[B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)RENSM01406  UniProtKB/TrEMBL A9WNP6  Ribonuclease PH
[B] Rothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA)ROTDC01733  UniProtKB/TrEMBL E3H1B2  Ribonuclease PH
[B] Tropheryma whipplei (strain Twist)TROWT00620  UniProtKB/Swiss-Prot RNPH_TROWT  Ribonuclease PH
[B] Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431)ACTM400945  UniProtKB/TrEMBL I0GZI0  putative ribonuclease PH
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO01088  UniProtKB/Swiss-Prot RNPH_SALTO  RNAse PH
[B] Propionibacterium acnes (strain KPA171202 / DSM 16379)PROAC01640  UniProtKB/Swiss-Prot RNPH_PROAC  Ribonuclease PH
[B] Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)ACTMD01000  UniProtKB/TrEMBL C6WNQ7  Ribonuclease PH
[B] Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)STRAW05168  UniProtKB/Swiss-Prot RNPH_STRAW  Ribonuclease PH
[B] Streptomyces bingchenggensis (strain BCW-1)STRBB06682  UniProtKB/TrEMBL D7BXR0  Ribonuclease PH
[B] Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488)NOCDD00380  UniProtKB/TrEMBL D7AVH2  ribonuclease PH COGs: COG0689 RNase PH; InterProIPR018336:IPR020568:IPR015847:IPR002381:IPR 001247; KEGG: tfu:Tfu_2365 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C1YH23 RNAse PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
[B] Thermobifida fusca (strain YX)THEFY02356  UniProtKB/TrEMBL Q47MC4  ribonuclease PH
[B] Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)STRRD01661  UniProtKB/TrEMBL D2AT49  tRNA nucleotidyltransferase
[B] Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)THECD03783  UniProtKB/TrEMBL D1AD85  Ribonuclease PH
[B] Bifidobacterium animalis subsp. lactis (strain AD011)BIFA000267  UniProtKB/TrEMBL B8DVS5  Ribonuclease PH
[B] Bifidobacterium animalis subsp. lactis (strain BB-12)BIFAB00806  UniProtKB/TrEMBL D3R3J0  Ribonuclease PH
[B] Bifidobacterium longum (strain NCC 2705)BIFLO00929  UniProtKB/Swiss-Prot RNPH_BIFLO  Ribonuclease PH
[B] Gardnerella vaginalis (strain 409-05)GARV400319  UniProtKB/TrEMBL D2R9V8  tRNA nucleotidyltransferase
[B] Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)SLAHD00871  UniProtKB/TrEMBL C7N4X1  RNAse PH
[B] Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)CONWI01854  UniProtKB/TrEMBL D3F312  ribonuclease PH KEGG: azo:azo3963 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT02613  UniProtKB/Swiss-Prot RNPH_ANAVT  Ribonuclease PH
[B] Nostoc azollae (strain 0708)NOSA001057  UniProtKB/TrEMBL D7E4G9  Ribonuclease PH
[B] Paenibacillus sp. (strain JDR-2)PAESJ04396  UniProtKB/TrEMBL C6D899  Ribonuclease PH
[B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT03627  UniProtKB/Swiss-Prot RNPH_RHORT  Ribonuclease PH

Internal infos: group_nr=220452; pid=15881, generation_time=0.028