List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.

Keyword Protein Sequence Group Entry

OMA Group 220452

ribonuclease PH
This group has 72 members: 13 [A]rchaea 59 [B]acteria
Fingerprint: VEFGGTK

Protein List | Alignment | Close Groups | Ontology Download: download fasta, download darwin

[A] Sulfolobus islandicus (strain L.D.8.5 / Lassen #2)SULID01465  UniProtKB/TrEMBL D2PC57  Exosome complex exonuclease 1
[A] Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)SULIM01258  UniProtKB/TrEMBL C3MVG4  
[A] Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)VULDI00811  UniProtKB/TrEMBL E1QP55  Probable exosome complex exonuclease 1
[A] Vulcanisaeta moutnovskia (strain 768-28)VULM701665  UniProtKB/TrEMBL F0QUH5  exosome complex exonuclease 1
[A] Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)ARCFU00481  UniProtKB/Swiss-Prot RRP41_ARCFU  Probable exosome complex exonuclease 1pmp logo
[A] Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)ARCPA00500  UniProtKB/TrEMBL D2RH03  Exosome complex exonuclease 1
[A] Archaeoglobus veneficus (strain DSM 11195 / SNP6)ARCVS01001  UniProtKB/TrEMBL F2KT32  exosome complex exonuclease 1 COGs: COG0689 RNase PH; HAMAP: Exoribonuclease, exosome complex; InterPro IPR011807: IPR001247: IPR015847; KEGG: apo:Arcpr_0512 exosome complex exonuclease 1; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; SPTR: Probable exosome complex exonuclease 1; TIGRFAM: Exoribonuclease, exosome complex; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: archaeal exosome-like complex exonuclease 1
[A] Methanobacterium sp. (strain AL-21)METSL02147  UniProtKB/TrEMBL F0TCD3  
[A] Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)METST01204  UniProtKB/TrEMBL Q2NEX5  putative exosome complex, exonuclease 1 subunit COG0689, pfam01138, pfam03725
[A] Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg)METTM01052  UniProtKB/TrEMBL D9PWR6  Probable exosome complex exonuclease 1
[A] Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)METTH00678  UniProtKB/Swiss-Prot RRP41_METTH  Probable exosome complex exonuclease 1pmp logo
[A] Uncultured methanogenic archaeon RC-IUNCMA00984  UniProtKB/TrEMBL Q0W2Y8  putative exosome complex exonuclease 1
[A] Cenarchaeum symbiosum (strain A)CENSY01502  UniProtKB/Swiss-Prot RRP41_CENSY  RNase PHpmp logo
[B] Koribacter versatilis (strain Ellin345)KORVE01612  UniProtKB/TrEMBL Q1IR82  ribonuclease PH
[B] Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125)MOBCV00087  UniProtKB/TrEMBL D6ZI57  ribonuclease PH COG: COG0689; Pfam: PF01138,PF03725; InterPro: IPR002381
[B] Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897)CATAD07417  UniProtKB/TrEMBL C7QB87  Ribonuclease PH
[B] Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)CORA702065  UniProtKB/TrEMBL C3PIN6  Ribonuclease PH
[B] Corynebacterium diphtheriae (strain ATCC 27012 / C7 (beta))CORD701789  UniProtKB/TrEMBL H2GWL9  ribonuclease PH
[B] Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)CORDI01803  UniProtKB/Swiss-Prot RNPH_CORDI  Ribonuclease PHpmp logo
[B] Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)COREF02346  UniProtKB/Swiss-Prot RNPH_COREF  similar to U00014-5|AAA50880.1| percent identity: 64 in 238 aa putative ribonucleasepmp logo
[B] Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)CORGL02492  UniProtKB/Swiss-Prot RNPH_CORGL  Ribonuclease PHpmp logo
[B] Corynebacterium jeikeium (strain K411)CORJK00470  UniProtKB/TrEMBL Q4JX02  ribonuclease PH
[B] Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)CORK401341  UniProtKB/Swiss-Prot RNPH_CORK4  Ribonuclease PH
[B] Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026)CORRG00424  UniProtKB/TrEMBL F8DY56  ribonuclease PH RNase PH
[B] Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667)GORB401826  UniProtKB/TrEMBL D0L9N7  Ribonuclease PH
[B] Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)AMYSD03602  UniProtKB/TrEMBL F6ES59  Ribonuclease PH
[B] Mycobacterium avium (strain 104)MYCA101469  UniProtKB/Swiss-Prot RNPH_MYCA1  ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966pmp logo
[B] Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)MYCPA02396  UniProtKB/Swiss-Prot RNPH_MYCPA  Ribonuclease PHpmp logo
[B] Mycobacterium gilvum (strain PYR-GCK)MYCGI02275  UniProtKB/Swiss-Prot RNPH_MYCGI  ribonuclease PH TIGRFAM: ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PHpmp logo
[B] Mycobacterium leprae (strain Br4923)MYCLB01161  UniProtKB/Swiss-Prot RNPH_MYCLB  Ribonuclease PHpmp logo
[B] Mycobacterium marinum (strain ATCC BAA-535 / M)MYCMM03947  UniProtKB/TrEMBL B2HQF7  Ribonuclease RphA
[B] Mycobacterium sp. (strain KMS)MYCSK03825  UniProtKB/Swiss-Prot RNPH_MYCSK  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonucleasepmp logo
[B] Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)MYCBO01369  UniProtKB/Swiss-Prot RNPH_MYCBO  Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC, highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY. PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)pmp logo
[B] Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP04137  UniProtKB/Swiss-Prot RNPH_MYCVP  ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonucleasepmp logo
[B] Nocardia farcinica (strain IFM 10152)NOCFA01102  UniProtKB/Swiss-Prot RNPH_NOCFA  Ribonuclease PHpmp logo
[B] Rhodococcus equi (strain 103S)RHOE101698  UniProtKB/TrEMBL E4WG05  Ribonuclease PH
[B] Rhodococcus opacus (strain B4)RHOOB01141  UniProtKB/TrEMBL C1AVV8  Ribonuclease PH
[B] Acidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101680  UniProtKB/TrEMBL A0LVJ6  ribonuclease PH KEGG: sco:SCO2904 putative ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Blastococcus saxobsidens (strain DD2)BLASD01103  UniProtKB/TrEMBL H6RW99  RNase PH Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1512253; Product type e : enzyme
[B] Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104)NAKMY01609  UniProtKB/TrEMBL C8XFY0  Ribonuclease PH
[B] Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)BEUC102713  UniProtKB/TrEMBL C5BY79  Ribonuclease PH
[B] Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)CELFA01344  UniProtKB/TrEMBL F4H518  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134)CELFN01301  UniProtKB/TrEMBL D5UCB0  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: bcv:Bcav_2734 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078)CELGA02186  UniProtKB/TrEMBL F8A0P6  ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860)BRAFD01922  UniProtKB/TrEMBL C7ME06  RNAse PH
[B] Leifsonia xyli subsp. xyli (strain CTCB07)LEIXX01062  UniProtKB/Swiss-Prot RNPH_LEIXX  Ribonuclease PHpmp logo
[B] Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117)ARTAR01234  UniProtKB/TrEMBL E1VV50  tRNA nucleotidyltransferase removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
[B] Arthrobacter sp. (strain FB24)ARTS202554  UniProtKB/TrEMBL A0JY40  ribonuclease PH KEGG: lxx:Lxx13580 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
[B] Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)KOCRD00998  UniProtKB/TrEMBL B2GM08  Ribonuclease PH
[B] Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)RENSM01406  UniProtKB/TrEMBL A9WNP6  Ribonuclease PH
[B] Rothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA)ROTDC01733  UniProtKB/TrEMBL E3H1B2  Ribonuclease PH
[B] Tropheryma whipplei (strain Twist)TROWT00620  UniProtKB/Swiss-Prot RNPH_TROWT  Ribonuclease PHpmp logo
[B] Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431)ACTM400945  UniProtKB/TrEMBL I0GZI0  putative ribonuclease PH
[B] Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO01088  UniProtKB/Swiss-Prot RNPH_SALTO  RNAse PHpmp logo
[B] Propionibacterium acnes (strain KPA171202 / DSM 16379)PROAC01640  UniProtKB/Swiss-Prot RNPH_PROAC  Ribonuclease PHpmp logo
[B] Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)ACTMD01000  UniProtKB/TrEMBL C6WNQ7  Ribonuclease PH
[B] Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)STRAW05168  UniProtKB/Swiss-Prot RNPH_STRAW  Ribonuclease PHpmp logo
[B] Streptomyces bingchenggensis (strain BCW-1)STRBB06682  UniProtKB/TrEMBL D7BXR0  Ribonuclease PH
[B] Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488)NOCDD00380  UniProtKB/TrEMBL D7AVH2  ribonuclease PH COGs: COG0689 RNase PH; InterProIPR018336:IPR020568:IPR015847:IPR002381:IPR 001247; KEGG: tfu:Tfu_2365 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C1YH23 RNAse PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
[B] Thermobifida fusca (strain YX)THEFY02356  UniProtKB/TrEMBL Q47MC4  ribonuclease PH
[B] Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)STRRD01661  UniProtKB/TrEMBL D2AT49  tRNA nucleotidyltransferase
[B] Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)THECD03783  UniProtKB/TrEMBL D1AD85  Ribonuclease PH
[B] Bifidobacterium animalis subsp. lactis (strain AD011)BIFA000267  UniProtKB/TrEMBL B8DVS5  Ribonuclease PH
[B] Bifidobacterium animalis subsp. lactis (strain BB-12)BIFAB00806  UniProtKB/TrEMBL D3R3J0  Ribonuclease PH
[B] Bifidobacterium longum (strain NCC 2705)BIFLO00929  UniProtKB/Swiss-Prot RNPH_BIFLO  Ribonuclease PHpmp logo
[B] Gardnerella vaginalis (strain 409-05)GARV400319  UniProtKB/TrEMBL D2R9V8  tRNA nucleotidyltransferase
[B] Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)SLAHD00871  UniProtKB/TrEMBL C7N4X1  RNAse PH
[B] Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)CONWI01854  UniProtKB/TrEMBL D3F312  ribonuclease PH KEGG: azo:azo3963 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT02613  UniProtKB/Swiss-Prot RNPH_ANAVT  Ribonuclease PHpmp logo
[B] Nostoc azollae (strain 0708)NOSA001057  UniProtKB/TrEMBL D7E4G9  Ribonuclease PH
[B] Paenibacillus sp. (strain JDR-2)PAESJ04396  UniProtKB/TrEMBL C6D899  Ribonuclease PH
[B] Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT03627  UniProtKB/Swiss-Prot RNPH_RHORT  Ribonuclease PHpmp logo

Internal infos: group_nr=220452; pid=31242, generation_time=0.028