OMA Group 263535

ribonuclease ph


This group has 836 members: E1 A1 B834

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TaxonProtein IDCross referenceFunction annotation
EOryza sativa subsp. indicaORYSI37746unknown xref logo BGIOSGA040246-PA
AAciduliprofundum boonei (strain DSM 19572 / T469)ACIB400411UniProtKB/TrEMBL B5IAD2Ribonuclease PH
BAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)ACIC502673UniProtKB/TrEMBL C1F3D1tRNA nucleotidyltransferase
BTerriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63)TERRK02293UniProtKB/TrEMBL I3ZI88RNAse PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH; manually curated
BTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)TERSS00769UniProtKB/TrEMBL E8V6E7ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: aca:ACP_2825 tRNA nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BSolibacter usitatus (strain Ellin6076)SOLUE07537UniProtKB/Swiss-Prot RNPH_SOLUEribonuclease PH KEGG: aba:Acid345_1616 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
BChloracidobacterium thermophilum (strain B)CHLTF00297UniProtKB/TrEMBL G2LE15RNAse PH
BKoribacter versatilis (strain Ellin345)KORVE01612UniProtKB/TrEMBL Q1IR82ribonuclease PH pmp logo
BAcidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP)ACIFD01664UniProtKB/TrEMBL C7M109Ribonuclease PH
BArcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018)ARCHD01049UniProtKB/TrEMBL D7BPH4Ribonuclease PH
BMobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125)MOBCV00087UniProtKB/TrEMBL D6ZI57ribonuclease PH COG: COG0689; Pfam: PF01138,PF03725; InterPro: IPR002381
BCatenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897)CATAD07417UniProtKB/TrEMBL C7QB87Ribonuclease PH
BCorynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)CORA702065UniProtKB/TrEMBL C3PIN6Ribonuclease PH
BCorynebacterium diphtheriae (strain 241)CORD201731UniProtKB/TrEMBL H2GE77ribonuclease PH
BCorynebacterium diphtheriae (strain 31A)CORD301809UniProtKB/TrEMBL H2G6U5ribonuclease PH
BCorynebacterium diphtheriae (strain ATCC 27012 / C7 (beta))CORD701789UniProtKB/TrEMBL H2GWL9ribonuclease PH
BCorynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)CORDI01803UniProtKB/Swiss-Prot RNPH_CORDIRibonuclease PH
BCorynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)COREF02348UniProtKB/Swiss-Prot RNPH_COREFputative ribonuclease CE2401, similar to U00014-5|AAA50880.1| percent identity: 64 in 238 aa pmp logo
BCorynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)CORGL02492UniProtKB/Swiss-Prot RNPH_CORGLRibonuclease PH
BCorynebacterium glutamicum (strain ATCC 13032 / K051)CORGK02406UniProtKB/TrEMBL I0LMA8ribonuclease PH pmp logo
BCorynebacterium glutamicum (strain R)CORGB02457UniProtKB/Swiss-Prot RNPH_CORGBHypothetical protein
BCorynebacterium jeikeium (strain K411)CORJK00472UniProtKB/TrEMBL Q4JX02ribonuclease PH pmp logo
BCorynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)CORK401341UniProtKB/Swiss-Prot RNPH_CORK4Ribonuclease PH
BCorynebacterium pseudotuberculosis (strain C231)CORP201620UniProtKB/TrEMBL D9QC43Ribonuclease PH
BCorynebacterium pseudotuberculosis (strain FRC41)CORPF01657UniProtKB/TrEMBL D8KPD3Ribonuclease PH
BCorynebacterium pseudotuberculosis (strain I19)CORP901649UniProtKB/TrEMBL E3F8E6Ribonuclease PH
BCorynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026)CORRG00424UniProtKB/TrEMBL F8DY56ribonuclease PH RNase PH
BCorynebacterium ulcerans (strain BR-AD22)CORUB01820UniProtKB/TrEMBL G0CX36ribonuclease PH RNase PH
BCorynebacterium urealyticum (strain ATCC 43042 / DSM 7109)CORU701457UniProtKB/TrEMBL B1VGW9Ribonuclease PH pmp logo
BGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667)GORB401826UniProtKB/TrEMBL D0L9N7Ribonuclease PH
BAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)AMYSD03602UniProtKB/TrEMBL F6ES59Ribonuclease PH
BMycobacterium abscessus (strain ATCC 19977 / DSM 44196)MYCA901465UniProtKB/Swiss-Prot RNPH_MYCA9Probable ribonuclease PH
BMycobacterium avium (strain 104)MYCA101469UniProtKB/Swiss-Prot RNPH_MYCA1ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BMycobacterium paratuberculosis (strain ATCC BAA-968 / K-10)MYCPA02396UniProtKB/Swiss-Prot RNPH_MYCPARibonuclease PH
BMycobacterium gilvum (strain PYR-GCK)MYCGI02275UniProtKB/Swiss-Prot RNPH_MYCGIribonuclease PH TIGRFAM: ribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH
BMycobacterium sp. (strain Spyr1)MYCSR01674UniProtKB/TrEMBL E6TAC9 pmp logo
BMycobacterium leprae (strain Br4923)MYCLB01161UniProtKB/Swiss-Prot RNPH_MYCLBRibonuclease PH
BMycobacterium leprae (strain TN)MYCLE01160UniProtKB/Swiss-Prot RNPH_MYCLERibonuclease PH
BMycobacterium marinum (strain ATCC BAA-535 / M)MYCMM03947UniProtKB/TrEMBL B2HQF7Ribonuclease RphA
BMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)MYCS204626UniProtKB/Swiss-Prot RNPH_MYCS2Ribonuclease PH
BMycobacterium sp. (strain JLS)MYCSJ03763UniProtKB/Swiss-Prot RNPH_MYCSJribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
BMycobacterium sp. (strain KMS)MYCSK03825UniProtKB/Swiss-Prot RNPH_MYCSKribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
BMycobacterium sp. (strain MCS)MYCSS03805UniProtKB/Swiss-Prot RNPH_MYCSSRibonuclease PH
BMycobacterium bovis (strain ATCC BAA-935 / AF2122/97)MYCBO03569UniProtKB/Swiss-Prot RNPH_MYCBOPROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC 2.7.7.56), highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY.
BMycobacterium bovis (strain BCG / Pasteur 1173P2)MYCBP01375UniProtKB/Swiss-Prot RNPH_MYCBPProbable ribonuclease rphA
BMycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)MYCBT01364UniProtKB/Swiss-Prot RNPH_MYCBTRibonuclease PH
BMycobacterium canettii (strain CIPT 140010059)MYCCP01343UniProtKB/TrEMBL G0TIE6putative ribonuclease RPHA (RNase PH) (tRNA nucleotidyltransferase)
BMycobacterium tuberculosisMYCTU01355UniProtKB/Swiss-Prot RNPH_MYCTURibonuclease PH pmp logo
BMycobacterium tuberculosis (strain ATCC 25177 / H37Ra)MYCTA01359UniProtKB/Swiss-Prot RNPH_MYCTARibonuclease PH
BMycobacterium tuberculosis (strain CCDC5079)MYCTC01235UniProtKB/TrEMBL F7WI17rph, ribonuclease PH pmp logo
BMycobacterium tuberculosis (strain CCDC5180)MYCTD01222UniProtKB/TrEMBL F7WX25rph, ribonuclease PH pmp logo
BMycobacterium tuberculosis (strain F11)MYCTF01327UniProtKB/TrEMBL A5WM24ribonuclease rphA (RNase ph) Mapped to H37Rv Rv1340 pmp logo
BMycobacterium tuberculosis (strain KZN 1435 / MDR)MYCTK02666UniProtKB/TrEMBL C6DTP5Ribonuclease PH pmp logo
BMycobacterium ulcerans (strain Agy99)MYCUA03162UniProtKB/Swiss-Prot RNPH_MYCUAribonuclease RphA cytoplasmic protein RNase ph is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [catalytic activity: {tRNA}(n+1) + phosphate = {tRNA}(N) + a nucleoside diphosphate]
BMycobacterium vanbaalenii (strain DSM 7251 / PYR-1)MYCVP04137UniProtKB/Swiss-Prot RNPH_MYCVPribonuclease PH KEGG: mmc:Mmcs_3844 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
BNocardia cyriacigeorgica (strain GUH-2)NOCCG01152UniProtKB/TrEMBL H6R3M3Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1925027, 1512252; Product type e : enzyme
BNocardia farcinica (strain IFM 10152)NOCFA01102UniProtKB/Swiss-Prot RNPH_NOCFARibonuclease PH
BRhodococcus equi (strain 103S)RHOE101698UniProtKB/TrEMBL E4WG05Ribonuclease PH
BRhodococcus erythropolis (strain PR4 / NBRC 100887)RHOE403871UniProtKB/Swiss-Prot RNPH_RHOE4Ribonuclease PH
BRhodococcus sp. (strain RHA1)RHOSR01396UniProtKB/TrEMBL Q0SGT5TRNA nucleotidyltransferase pmp logo
BRhodococcus opacus (strain B4)RHOOB01141UniProtKB/TrEMBL C1AVV8Ribonuclease PH
BSegniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578)SEGRD01499UniProtKB/TrEMBL D6Z7R6Ribonuclease PH
BAcidothermus cellulolyticus (strain ATCC 43068 / 11B)ACIC101680UniProtKB/TrEMBL A0LVJ6ribonuclease PH KEGG: sco:SCO2904 putative ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BFrankia sp. (strain CcI3)FRASC00848UniProtKB/Swiss-Prot RNPH_FRASCRNAse PH
BFrankia sp. (strain EAN1pec)FRASN05476UniProtKB/Swiss-Prot RNPH_FRASNRibonuclease PH
BFrankia sp. (strain EuI1c)FRASU05698UniProtKB/TrEMBL E3IX17ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; manually curated; KEGG: gob:Gobs_1364 ribonuclease PH; TIGRFAM: ribonuclease PH
BFrankia symbiont subsp. Datisca glomerataFRADG01095UniProtKB/TrEMBL F8B0B2Ribonuclease PH KEGG: fri:FraEuI1c_5805 ribonuclease PH; manually curated; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; HAMAP: Ribonuclease phosphorolytic, bacterial-type
BBlastococcus saxobsidens (strain DD2)BLASD01103UniProtKB/TrEMBL H6RW99RNase PH Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1512253; Product type e : enzyme
BGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)GEOOG01283UniProtKB/TrEMBL D2SBF1Ribonuclease PH
BNakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104)NAKMY01609UniProtKB/TrEMBL C8XFY0Ribonuclease PH
BStackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)STANL01526UniProtKB/TrEMBL D3PW92Ribonuclease PH
BKineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)KINRD03726UniProtKB/TrEMBL A6WEI7Ribonuclease PH pmp logo
BBeutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)BEUC102713UniProtKB/TrEMBL C5BY79Ribonuclease PH
BCellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547)CELFA01344UniProtKB/TrEMBL F4H518ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BCellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134)CELFN01301UniProtKB/TrEMBL D5UCB0ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: bcv:Bcav_2734 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BCellvibrio gilvus (strain ATCC 13127 / NRRL B-14078)CELGA02186UniProtKB/TrEMBL F8A0P6ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BBrachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860)BRAFD01922UniProtKB/TrEMBL C7ME06RNAse PH
BKytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541)KYTSD00930UniProtKB/TrEMBL C7NG41RNAse PH
BClavibacter michiganensis subsp. michiganensis (strain NCPPB 382)CLAM301312UniProtKB/TrEMBL A5CQI7Ribonuclease PH
BClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1)CLAMS02025UniProtKB/TrEMBL B0RFB1Ribonuclease PH pmp logo
BLeifsonia xyli subsp. xyli (strain CTCB07)LEIXX01062UniProtKB/Swiss-Prot RNPH_LEIXXRibonuclease PH
BArthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117)ARTAR01234UniProtKB/TrEMBL E1VV50tRNA nucleotidyltransferase removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BArthrobacter aurescens (strain TC1)ARTAT02450UniProtKB/TrEMBL A1R7S9Ribonuclease PH pmp logo
BArthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)ARTCA02273UniProtKB/TrEMBL B8HAW4Ribonuclease PH
BArthrobacter sp. (strain FB24)ARTS202554UniProtKB/TrEMBL A0JY40ribonuclease PH KEGG: lxx:Lxx13580 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BKocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)KOCRD00998UniProtKB/TrEMBL B2GM08Ribonuclease PH
BRenibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)RENSM01406UniProtKB/TrEMBL A9WNP6Ribonuclease PH pmp logo
BRothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA)ROTDC01733UniProtKB/TrEMBL E3H1B2Ribonuclease PH
BRothia mucilaginosa (strain DY-18)ROTMD01263UniProtKB/TrEMBL D2NTX0Ribonuclease PH
BXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)XYLCX01052UniProtKB/TrEMBL D1BZD9ribonuclease PH KEGG: azo:azo3963 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BTropheryma whipplei (strain TW08/27)TROW800609UniProtKB/Swiss-Prot Q83HF6ribonuclease PH Similar to Escherichia coli ribonuclease PH Rph or b3643 SWALL:RNPH_ECOLI (SWALL:P03842) (238 aa) fasta scores: E(): 5.3e-42, 49.57% id in 236 aa, and to Bifidobacterium longum NCC2705 probable ribonuclease PH bl0286 SWALL:AAN24126 (EMBL:AE014647) (258 aa) fasta scores: E(): 3.3e-46, 54.39% id in 239 aa
BTropheryma whipplei (strain Twist)TROWT00620UniProtKB/Swiss-Prot RNPH_TROWTRibonuclease PH
BActinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431)ACTM400945UniProtKB/TrEMBL I0GZI0putative ribonuclease PH
BActinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)ACTS501054UniProtKB/TrEMBL G8RZ65ribonuclease PH RNase PH
BMicromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442)MICAI01150UniProtKB/TrEMBL D9TD84Ribonuclease PH
BMicromonospora sp. (strain L5)MICSL01397UniProtKB/TrEMBL E8S5F4
BSalinispora arenicola (strain CNS-205)SALAI00968UniProtKB/Swiss-Prot RNPH_SALAIRibonuclease PH
BSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)SALTO01088UniProtKB/Swiss-Prot RNPH_SALTORNAse PH
BKribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)KRIFD01807UniProtKB/TrEMBL D2PPH9Ribonuclease PH
BNocardioides sp. (strain BAA-499 / JS614)NOCSJ01280UniProtKB/Swiss-Prot RNPH_NOCSJRibonuclease PH
BPropionibacterium acnes (strain KPA171202 / DSM 16379)PROAC01640UniProtKB/Swiss-Prot RNPH_PROACRibonuclease PH
BPropionibacterium acnes (strain SK137)PROAS01665UniProtKB/TrEMBL D4H979tRNA nucleotidyltransferase identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BPropionibacterium propionicum (strain F0230a)PROPF00884UniProtKB/TrEMBL I6XNC6tRNA nucleotidyltransferase
BActinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)ACTMD01000UniProtKB/TrEMBL C6WNQ7Ribonuclease PH
BAmycolatopsis mediterranei (strain U-32)AMYMU07565UniProtKB/TrEMBL D8HSM8ribonuclease PH
BPseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190)PSEUX01447UniProtKB/TrEMBL F4CU39Ribonuclease PH KEGG: sen:SACE_1212 ribonuclease PH; manually curated; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; HAMAP: Ribonuclease phosphorolytic, bacterial-type
BSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)SACVD02795UniProtKB/TrEMBL C7MWC0RNAse PH
BSaccharopolyspora erythraea (strain NRRL 23338)SACEN01173UniProtKB/Swiss-Prot RNPH_SACENRibonuclease PH
BThermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51)THEBD00929UniProtKB/TrEMBL D6Y771ribonuclease PH KEGG: ilo:IL2425 RNase PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BKitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054)KITSK02659UniProtKB/TrEMBL E4NBP7putative ribonuclease PH protein synonym:RNase PH protein synonym:tRNA nucleotidyltransferase
BStreptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)STRAW05168UniProtKB/Swiss-Prot RNPH_STRAWRibonuclease PH
BStreptomyces bingchenggensis (strain BCW-1)STRBB06682UniProtKB/TrEMBL D7BXR0Ribonuclease PH
BStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)STRCO02175UniProtKB/Swiss-Prot RNPH_STRCOputative ribonuclease PH SCE19A.04c, rph, probable ribonuclease PH, len: 245 aa; highly similar to many e.g. SW:RNPH_ECOLI (EMBL:X00781), rph, Escherichia coli ribonuclease PH (238 aa), fasta scores; opt: 916 z-score: 1116.8 E(): 0, 60.8% identity in 240 aa overlap. Contains Pfam match to entry PF01138 RNase_PH, 3' exoribonuclease family and PS01277 Ribonuclease PH signature
BStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)STRGG04511UniProtKB/Swiss-Prot RNPH_STRGGPutative ribonuclease PH
BStreptomyces scabies (strain 87.22)STRSW05427UniProtKB/TrEMBL C9Z2I8Putative ribonuclease
BNocardiopsis alba (strain ATCC BAA-2165 / BE74)NOCAA03193UniProtKB/TrEMBL J7LDZ4ribonuclease PH
BNocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488)NOCDD00380UniProtKB/TrEMBL D7AVH2ribonuclease PH COGs: COG0689 RNase PH; InterProIPR018336:IPR020568:IPR015847:IPR002381:IPR 001247; KEGG: tfu:Tfu_2365 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C1YH23 RNAse PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BThermobifida fusca (strain YX)THEFY02356UniProtKB/TrEMBL Q47MC4RNAse PH pmp logo
BStreptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)STRRD01661UniProtKB/TrEMBL D2AT49tRNA nucleotidyltransferase
BThermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)THECD03783UniProtKB/TrEMBL D1AD85Ribonuclease PH
BBifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8)BIFAR00291UniProtKB/TrEMBL I1W8E0ribonuclease PH COG0689 RNase PH
BBifidobacterium animalis subsp. lactis (strain AD011)BIFA000267UniProtKB/TrEMBL B8DVS5Ribonuclease PH
BBifidobacterium animalis subsp. lactis (strain BB-12)BIFAB00806UniProtKB/TrEMBL D3R3J0Ribonuclease PH
BBifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219)BIFLB00278UniProtKB/TrEMBL C6A6C9Ribonuclease PH
BBifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314)BIFAS00278UniProtKB/TrEMBL C6AGY7Ribonuclease PH
BBifidobacterium animalis subsp. lactis (strain V9)BIFAV00278UniProtKB/TrEMBL D5TFJ1Ribonuclease PH
BBifidobacterium bifidum (strain S17)BIFBS00360UniProtKB/TrEMBL E3EPM8Ribonuclease PH
BBifidobacterium breve (strain ACS-071-V-Sch8b)BIFBA00378UniProtKB/TrEMBL F6C7G5tRNA nucleotidyltransferase
BBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)BIFDB00310UniProtKB/TrEMBL D2Q874Rph Ribonuclease PH pmp logo
BBifidobacterium longum (strain DJO10A)BIFLD01014UniProtKB/TrEMBL B3DTK8RNase PH
BBifidobacterium longum (strain NCC 2705)BIFLO00929UniProtKB/Swiss-Prot RNPH_BIFLORibonuclease PH
BBifidobacterium longum subsp. infantis (strain 157F)BIFL100318UniProtKB/TrEMBL E8MRS5putative ribonuclease PH
BBifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)BIFLS00082UniProtKB/TrEMBL B7GN26ribonuclease PH KEGG: blo:BL0286 probable ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease
BBifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b)BIFL200326UniProtKB/TrEMBL E8MGU6putative ribonuclease PH
BBifidobacterium longum subsp. longum (strain BBMN68)BIFLM01024UniProtKB/TrEMBL E4R093Rph RNase PH pmp logo
BBifidobacterium longum subsp. longum (strain JDM301)BIFLJ00365UniProtKB/TrEMBL D6ZY71Ribonuclease PH pmp logo
BGardnerella vaginalis (strain 409-05)GARV400319UniProtKB/TrEMBL D2R9V8tRNA nucleotidyltransferase
BAtopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)ATOPD00161UniProtKB/TrEMBL C8W913Ribonuclease PH
BCoriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2)CORGP01372UniProtKB/TrEMBL F2NAP7RNAse PH COGs: COG0689 RNase PH; InterPro IPR018336:IPR002381:IPR001247:IPR015847; KEGG: apv:Apar_0165 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: ribonuclease PH; IMG reference gene:2503576219; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BSlackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)SLAHD00871UniProtKB/TrEMBL C7N4X1RNAse PH
BConexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)CONWI01854UniProtKB/TrEMBL D3F312ribonuclease PH KEGG: azo:azo3963 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BAquifex aeolicus (strain VF5)AQUAE00645UniProtKB/Swiss-Prot RNPH_AQUAERibonuclease PH
BHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)HYDTT00177UniProtKB/TrEMBL D3DFP2Ribonuclease PH
BHydrogenobaculum sp. (strain Y04AAS1)HYDS000851UniProtKB/Swiss-Prot RNPH_HYDS0Ribonuclease PH
BThermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12)THEAH01284UniProtKB/TrEMBL D3SME3Ribonuclease PH
BThermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1)THEA100133UniProtKB/TrEMBL E8T3H6ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: tjr:TherJR_2567 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BPersephonella marina (strain DSM 14350 / EX-H1)PERMH00256UniProtKB/Swiss-Prot RNPH_PERMHRibonuclease PH
BSulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825)SULAA00317UniProtKB/TrEMBL C1DT85Ribonuclease PH
BSulfurihydrogenibium sp. (strain YO3AOP1)SULSY00506UniProtKB/Swiss-Prot RNPH_SULSYRibonuclease PH
BChloroflexus aggregans (strain MD-66 / DSM 9485)CHLAD03534UniProtKB/TrEMBL B8GAB7Ribonuclease PH pmp logo
BChloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)CHLAA00240UniProtKB/TrEMBL A9WCA5Ribonuclease PH pmp logo
BChloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)CHLSY00251UniProtKB/TrEMBL B9LHJ0Ribonuclease PH pmp logo
BRoseiflexus castenholzii (strain DSM 13941 / HLO8)ROSCS03825UniProtKB/TrEMBL A7NQX4ribonuclease PH KEGG: rrs:RoseRS_2001 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BRoseiflexus sp. (strain RS-1)ROSS101928UniProtKB/TrEMBL A5UUT4Ribonuclease PH pmp logo
BDehalococcoides mccartyi (strain ATCC BAA-2100 / JCM 16839 / KCTC 5957 / BAV1)DEHMB01072UniProtKB/Swiss-Prot RNPH_DEHMBRNAse PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease
BDehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195)DEHM101168UniProtKB/Swiss-Prot RNPH_DEHM1ribonuclease PH identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BDehalococcoides mccartyi (strain CBDB1)DEHMC01017UniProtKB/Swiss-Prot RNPH_DEHMCribonuclease PH
BDehalococcoides mccartyi (strain VS)DEHMV01001UniProtKB/TrEMBL D2BIN9ribonuclease PH pmp logo
BDehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9)DEHLB00268UniProtKB/TrEMBL D8K3V0ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: deg:DehalGT_1026 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BSphaerobacter thermophilus (strain DSM 20745 / S 6022)SPHTD00421UniProtKB/TrEMBL D1C7N2Ribonuclease PH
BThermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)THERP00422UniProtKB/TrEMBL B9KY88Ribonuclease PH
BDesulfurispirillum indicum (strain ATCC BAA-1389 / S5)DESIS00533UniProtKB/TrEMBL E6W0P1ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: mei:Msip34_0047 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BAnabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT02616UniProtKB/Swiss-Prot RNPH_ANAVTRNAse PH
BNostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP702225UniProtKB/Swiss-Prot RNPH_NOSP7Ribonuclease PH
BNostoc sp. (strain PCC 7120 / UTEX 2576)NOSS100067UniProtKB/Swiss-Prot RNPH_NOSS1Ribonuclease PH
BNostoc azollae (strain 0708)NOSA001057UniProtKB/TrEMBL D7E4G9Ribonuclease PH
BAcaryochloris marina (strain MBIC 11017)ACAM102682UniProtKB/Swiss-Prot RNPH_ACAM1Ribonuclease PH
BCyanobium gracile (strain ATCC 27147 / PCC 6307)CYAGP01940UniProtKB/TrEMBL K9P881ribonuclease PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BCyanothece sp. (strain ATCC 51142)CYAA504454UniProtKB/Swiss-Prot RNPH_CYAA5Ribonuclease PH
BCyanothece sp. (strain PCC 7424)CYAP702937UniProtKB/Swiss-Prot RNPH_CYAP7Ribonuclease PH
BCyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP404716UniProtKB/Swiss-Prot RNPH_CYAP4Ribonuclease PH
BSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)SYNP600476UniProtKB/Swiss-Prot RNPH_SYNP6hypothetical protein
BSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP202044UniProtKB/TrEMBL B1XI78Ribonuclease PH pmp logo
BSynechococcus sp. (strain CC9311)SYNS300312UniProtKB/TrEMBL Q0IDC1Ribonuclease PH pmp logo
BSynechococcus sp. (strain CC9605)SYNSC00263UniProtKB/Swiss-Prot RNPH_SYNSCribonuclease PH
BSynechococcus sp. (strain CC9902)SYNS902054UniProtKB/TrEMBL Q3AUQ5RNAse PH pmp logo
BSynechococcus sp. (strain JA-2-3B'a(2-13))SYNJB01678UniProtKB/Swiss-Prot RNPH_SYNJBribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BSynechococcus sp. (strain JA-3-3Ab)SYNJA02498UniProtKB/Swiss-Prot RNPH_SYNJAribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BSynechococcus sp. (strain WH7803)SYNPW00320UniProtKB/TrEMBL A5GII1Ribonuclease PH pmp logo
BSynechococcus sp. (strain WH8102)SYNPX00276UniProtKB/Swiss-Prot RNPH_SYNPXRibonuclease PH
BThermosynechococcus elongatus (strain BP-1)THEEB00575UniProtKB/Swiss-Prot RNPH_THEEBRibonuclease PH
BLyngbya sp. (strain PCC 8106)LYNSP05591UniProtKB/TrEMBL A0YYX6ribonuclease PH COG0689 RNase PH pmp logo
BTrichodesmium erythraeum (strain IMS101)TRIEI01747UniProtKB/TrEMBL Q113J5Ribonuclease PH pmp logo
BStanieria cyanosphaera (strain ATCC 29371 / PCC 7437)STAC701621UniProtKB/TrEMBL K9XUA4RNAse PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH; COGs: COG0689 RNase PH; HAMAP: Ribonuclease phosphorolytic, bacterial-type; InterPro IPR001247:IPR015847:IPR002381; KEGG: ter:Tery_2089 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type
BProchlorococcus marinus (strain MIT 9303)PROM302418UniProtKB/TrEMBL A2CCH6Ribonuclease PH pmp logo
BProchlorococcus marinus (strain MIT 9313)PROMM02353UniProtKB/Swiss-Prot RNPH_PROMMribonuclease PH Alternative locus ID:P9313_23151
BCalditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)CALNY00572UniProtKB/TrEMBL E4TFM7Ribonuclease PH
BDeferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1)DEFDS00431UniProtKB/TrEMBL D3PBG7Ribonuclease PH
BDeinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923)DEIDV02439UniProtKB/TrEMBL C1CZJ0Putative tRNA nucleotidyltransferase
BDeinococcus geothermalis (strain DSM 11300)DEIGD02059UniProtKB/TrEMBL Q1IWK4ribonuclease PH KEGG: dra:DR1585 ribonuclease PH, ev=1e-107, 80% identity TIGRFAM: ribonuclease PH: (8.2e-53) PFAM: 3' exoribonuclease: (6.4e-27) pmp logo
BDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)DEIRA01544UniProtKB/Swiss-Prot RNPH_DEIRARibonuclease PH
BTruepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24)TRURR00473UniProtKB/TrEMBL D7CS85ribonuclease PH COGs: COG0689 RNase PH; InterPro IPR001247:IPR015847:IPR020568:IPR002381; KEGG: dge:Dgeo_2086 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Q1IWK4 Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BMeiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21)MEIRD01067UniProtKB/TrEMBL D3PQY7Ribonuclease PH
BMeiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2)MEISD01099UniProtKB/TrEMBL D7BDS4Ribonuclease PH
BDictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)DICT601165UniProtKB/Swiss-Prot RNPH_DICT6Ribonuclease PH
BDictyoglomus turgidum (strain Z-1310 / DSM 6724)DICTD01270UniProtKB/Swiss-Prot RNPH_DICTDRibonuclease PH
BFibrobacter succinogenes (strain ATCC 19169 / S85)FIBSS00624UniProtKB/TrEMBL C9RM77Ribonuclease PH
BAnoxybacillus flavithermus (strain DSM 21510 / WK1)ANOFW00582UniProtKB/Swiss-Prot RNPH_ANOFWRibonuclease PH
BBacillus amyloliquefaciens (strain FZB42)BACA202453UniProtKB/Swiss-Prot RNPH_BACA2Rph
BBacillus anthracisBACAN04260UniProtKB/Swiss-Prot RNPH_BACANRibonuclease PH pmp logo
BBacillus anthracis (strain A0248)BACAA04107UniProtKB/Swiss-Prot RNPH_BACAARibonuclease PH
BBacillus anthracis (strain CDC 684 / NRRL 3495)BACAC04578UniProtKB/Swiss-Prot RNPH_BACACRibonuclease PH
BBacillus atrophaeus (strain 1942)BACA102361UniProtKB/TrEMBL E3E0T0ribonuclease PH COG0689 RNase PH
BBacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4)BACCJ03085UniProtKB/TrEMBL E6TZT3ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: bpf:BpOF4_03065 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BBacillus cereus (strain 03BB102)BACC304389UniProtKB/Swiss-Prot RNPH_BACC3Ribonuclease PH
BBacillus cereus (strain AH187)BACC704392UniProtKB/Swiss-Prot RNPH_BACC7Ribonuclease PH
BBacillus cereus (strain AH820)BACC004467UniProtKB/Swiss-Prot RNPH_BACC0Ribonuclease PH
BBacillus cereus (strain ATCC 10987)BACC104534UniProtKB/Swiss-Prot RNPH_BACC1ribonuclease PH identified by match to protein family HMM PF01138; match to protein family HMM PF03725
BBacillus cereus (strain ATCC 14579 / DSM 31)BACCR04284UniProtKB/Swiss-Prot RNPH_BACCRRibonuclease PH
BBacillus cereus (strain B4264)BACC404421UniProtKB/Swiss-Prot RNPH_BACC4Ribonuclease PH
BBacillus cereus (strain G9842)BACC204494UniProtKB/Swiss-Prot RNPH_BACC2Ribonuclease PH
BBacillus cereus (strain Q1)BACCQ04159UniProtKB/Swiss-Prot RNPH_BACCQRibonuclease PH
BBacillus cereus (strain ZK / E33L)BACCZ04193UniProtKB/Swiss-Prot RNPH_BACCZribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
BBacillus cereus var. anthracis (strain CI)BACAI04215UniProtKB/TrEMBL D8GX96ribonuclease PH pmp logo
BBacillus clausii (strain KSM-K16)BACSK02639UniProtKB/Swiss-Prot RNPH_BACSKribonuclease PH
BBacillus cereus subsp. cytotoxis (strain NVH 391-98)BACCN03044UniProtKB/Swiss-Prot RNPH_BACCNRibonuclease PH
BBacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)BACHD03015UniProtKB/Swiss-Prot RNPH_BACHDRibonuclease PH
BBacillus licheniformis (strain DSM 13 / ATCC 14580)BACLD03096UniProtKB/Swiss-Prot RNPH_BACLDribonuclease PH
BBacillus megaterium (strain DSM 319)BACMD04570UniProtKB/TrEMBL D5DLN7ribonuclease PH
BBacillus pumilus (strain SAFR-032)BACP202446UniProtKB/Swiss-Prot RNPH_BACP2tRNA nucleotidyltransferase
BBacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10)BACIE01358UniProtKB/TrEMBL D6XSY7ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: azo:azo3963 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 pmp logo
BBacillus subtilis (strain BSn5)BACST00993UniProtKB/TrEMBL E8VGF2ribonuclease PH COG0689 RNase PH pmp logo
BBacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)BACPZ02722UniProtKB/TrEMBL E0TVB8ribonuclease PH
BBacillus subtilis (strain 168)BACSU02949UniProtKB/Swiss-Prot RNPH_BACSUribonuclease PH Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 1624460, 19153445; Product type e: enzyme
BBacillus thuringiensis (strain Al Hakam)BACAH03862UniProtKB/TrEMBL A0RJ97ribonuclease PH pmp logo
BBacillus thuringiensis subsp. finitimus (strain YBT-020)BACT004375UniProtKB/TrEMBL F0PZ26ribonuclease PH COG0689 RNase PH pmp logo
BBacillus thuringiensis subsp. konkukian (strain 97-27)BACHK04151UniProtKB/Swiss-Prot RNPH_BACHKRibonuclease PH
BBacillus weihenstephanensis (strain KBAB4)BACWK04215UniProtKB/Swiss-Prot RNPH_BACWKRibonuclease PH
BGeobacillus kaustophilus (strain HTA426)GEOKA02641UniProtKB/Swiss-Prot RNPH_GEOKAribonuclease PH
BGeobacillus sp. (strain WCH70)GEOSW02254UniProtKB/Swiss-Prot RNPH_GEOSWRibonuclease PH
BGeobacillus sp. (strain Y4.1MC1)GEOS000847UniProtKB/TrEMBL E3IFC0ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: gwc:GWCH70_2600 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BGeobacillus sp. (strain Y412MC61)GEOSY00806UniProtKB/TrEMBL C9RU39Ribonuclease PH
BGeobacillus thermodenitrificans (strain NG80-2)GEOTN02531UniProtKB/Swiss-Prot RNPH_GEOTNRibonuclease PH
BOceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)OCEIH02100UniProtKB/Swiss-Prot RNPH_OCEIHribonuclease PH (tRNA nucleotidyltransferase) CDS_ID OB2106
BExiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)EXIS202107UniProtKB/Swiss-Prot RNPH_EXIS2Ribonuclease PH
BExiguobacterium sp. (strain ATCC BAA-1283 / AT1b)EXISA02614UniProtKB/TrEMBL C4L4I6Ribonuclease PH
BListeria innocua serovar 6a (strain CLIP 11262)LISIN01197UniProtKB/Swiss-Prot RNPH_LISINRibonuclease PH
BListeria monocytogenes serotype 1/2a (strain 08-5923)LISM201257UniProtKB/TrEMBL D2P483ribonuclease PH pmp logo
BListeria monocytogenes serotype 4a (strain HCC23)LISMH01390UniProtKB/Swiss-Prot RNPH_LISMHRibonuclease PH
BListeria monocytogenes serotype 4a (strain L99)LISML01220UniProtKB/TrEMBL E1UFM0Ribonuclease PH pmp logo
BListeria monocytogenes serotype 4b (strain CLIP80459)LISMC01219UniProtKB/Swiss-Prot RNPH_LISMCPutative ribonuclease PH
BListeria monocytogenes serotype 4b (strain F2365)LISMF01232UniProtKB/Swiss-Prot RNPH_LISMFribonuclease PH identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BListeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)LISMO01233UniProtKB/Swiss-Prot RNPH_LISMORibonuclease PH
BListeria seeligeri serovar 1/2b (strain ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954)LISSS01120UniProtKB/TrEMBL D3UMD8ribonuclease PH
BListeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)LISW601193UniProtKB/Swiss-Prot RNPH_LISW6Rph protein
BBrevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)BREBN01787UniProtKB/Swiss-Prot RNPH_BREBNRibonuclease PH
BGeobacillus sp. (strain Y412MC10)GEOS401467UniProtKB/TrEMBL D3EKK7ribonuclease PH KEGG: pjd:Pjdr2_4458 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BPaenibacillus mucilaginosus (strain KNP414)PAEMK06336UniProtKB/TrEMBL F8FNU7Rph Ribonuclease PH
BPaenibacillus polymyxa (strain E681)PAEP603621UniProtKB/TrEMBL E0RA52Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) COGMatches:COG0689; PfamMatches:PF01138, PF03725; PrositeMatches:PS01277; go_process: RNA processing (GO:0006396)
BPaenibacillus polymyxa (strain SC2)PAEPS04180UniProtKB/TrEMBL E3E5V6Ribonuclease PH
BPaenibacillus sp. (strain JDR-2)PAESJ04396UniProtKB/TrEMBL C6D899Ribonuclease PH pmp logo
BPaenibacillus terrae (strain HPL-003)PAETH00116UniProtKB/TrEMBL G7VUA5ribonuclease ph:ham1 COG0689 RNase PH
BAlkaliphilus metalliredigens (strain QYMF)ALKMQ00873UniProtKB/TrEMBL A6TLV8Ribonuclease PH pmp logo
BAlkaliphilus oremlandii (strain OhILAs)ALKOO00546UniProtKB/TrEMBL A8MLK5Ribonuclease PH pmp logo
BClostridium botulinum (strain Eklund 17B / Type B)CLOBB00386UniProtKB/Swiss-Prot RNPH_CLOBBRibonuclease PH
BClostridium botulinum (strain Alaska E43 / Type E3)CLOBA00370UniProtKB/Swiss-Prot RNPH_CLOBARibonuclease PH
BClostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)CLOCE01293UniProtKB/Swiss-Prot RNPH_CLOCEribonuclease PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: cth:Cthe_0188 ribonuclease PH
BClostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)CLOK503301UniProtKB/Swiss-Prot RNPH_CLOK5RpH
BClostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC)CLOLD03569UniProtKB/TrEMBL D8GTB3ribonuclease PH
BClostridium perfringens (strain 13 / Type A)CLOPE02254UniProtKB/Swiss-Prot RNPH_CLOPERibonuclease PH
BClostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)CLOP102449UniProtKB/Swiss-Prot RNPH_CLOP1ribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BClostridium perfringens (strain SM101 / Type A)CLOPS02154UniProtKB/Swiss-Prot RNPH_CLOPSribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BClostridium thermocellum (strain ATCC 27405 / DSM 1237)CLOTH00183UniProtKB/TrEMBL A3DBV0Ribonuclease PH pmp logo
BClostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8)CLOTL01962UniProtKB/TrEMBL E6UMC9ribonuclease PH PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; manually curated; KEGG: ate:Athe_0837 ribonuclease PH; TIGRFAM: ribonuclease PH
BSulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL)SULAD00667UniProtKB/TrEMBL G8U128RNAse PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH; COGs: COG0689 RNase PH; HAMAP: Ribonuclease phosphorolytic, bacterial-type; InterPro IPR002381:IPR001247:IPR015847; KEGG: dno:DNO_0664 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type
BSulfobacillus acidophilus (strain TPY)SULAT01460UniProtKB/TrEMBL F8I561ribonuclease PH
BSymbiobacterium thermophilum (strain T / IAM 14863)SYMTH00340UniProtKB/Swiss-Prot RNPH_SYMTHRibonuclease PH
BAcetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655)ACEWD00292UniProtKB/TrEMBL H6LGH4ribonuclease PH
BEubacterium limosum (strain KIST612)EUBLK00931UniProtKB/TrEMBL E3GJP9ribonuclease PH
BHeliobacterium modesticaldum (strain ATCC 51547 / Ice1)HELMI00288UniProtKB/TrEMBL B0TFI3Ribonuclease ph pmp logo
BDesulforudis audaxviator (strain MP104C)DESAP01425UniProtKB/Swiss-Prot RNPH_DESAPRibonuclease PH
BDesulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1)DESDL02878UniProtKB/TrEMBL L0F9M8RNAse PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2
BDesulfitobacterium hafniense (strain DCB-2 / DSM 10664)DESHD04292UniProtKB/TrEMBL B8FVJ2Ribonuclease PH pmp logo
BDesulfitobacterium hafniense (strain Y51)DESHY03187UniProtKB/TrEMBL Q24SI1hypothetical protein similarity to COG0689 RNase PH(Evalue: 1E-82) pmp logo
BDesulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4)DESAJ04046UniProtKB/TrEMBL I4DBM8ribonuclease PH PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BDesulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644)DESAS03324UniProtKB/TrEMBL C8VW47Ribonuclease PH
BDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)DESK700348UniProtKB/TrEMBL F6CP62Ribonuclease PH PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: pth:PTH_0791 ribonuclease PH
BDesulfotomaculum reducens (strain MI-1)DESRM02580UniProtKB/Swiss-Prot RNPH_DESRMRibonuclease PH
BDesulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)DESRL00882UniProtKB/TrEMBL F6DJZ4ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: drm:Dred_2684 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)PELTS00782UniProtKB/TrEMBL A5D466RNase PH pmp logo
BSyntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)SYNGF02417UniProtKB/TrEMBL F0SWL1RNAse PH COGs: COG0689 RNase PH; HAMAP: Ribonuclease phosphorolytic, bacterial-type; InterPro IPR002381: IPR001247: IPR015847; KEGG: dsy:DSY3222 hypothetical protein; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BSyntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)SYNWW00420UniProtKB/Swiss-Prot RNPH_SYNWWTRNA nucleotidyltransferase
BSyntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)SYNLT01987UniProtKB/TrEMBL D7CIR9Ribonuclease PH
BHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)HALOH01508UniProtKB/TrEMBL B8CYB9Ribonuclease PH pmp logo
BNatranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)NATTJ01878UniProtKB/TrEMBL B2A6I8RNAse PH pmp logo
BThermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)THETN00557UniProtKB/Swiss-Prot RNPH_THETNRibonuclease PH
BCarboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)CARHZ00312UniProtKB/Swiss-Prot RNPH_CARHZribonuclease PH identified by similarity to SP:P28619; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BMoorella thermoacetica (strain ATCC 39073)MOOTA00502UniProtKB/Swiss-Prot RNPH_MOOTAribonuclease PH
BThermoanaerobacter italicus (strain DSM 9252 / Ab9)THEIA00561UniProtKB/TrEMBL D3T7G5Ribonuclease PH
BThermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3)THEM300619UniProtKB/TrEMBL D7ATG1Ribonuclease PH
BThermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)THEP301602UniProtKB/Swiss-Prot RNPH_THEP3Ribonuclease PH
BThermoanaerobacter sp. (strain X513)THESX00559UniProtKB/TrEMBL E1SY64ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: tpd:Teth39_1683 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 pmp logo
BThermoanaerobacter sp. (strain X514)THEPX00521UniProtKB/Swiss-Prot RNPH_THEPXRibonuclease PH
BCaldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)CALBD00777UniProtKB/Swiss-Prot RNPH_CALBDribonuclease PH KEGG: csc:Csac_0985 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BCaldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108)CALH101772UniProtKB/TrEMBL E4QDE0ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ate:Athe_0837 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BCaldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47)CALOO00701UniProtKB/TrEMBL D9TJA4ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: ate:Athe_0837 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BCaldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL)CALOW00634UniProtKB/TrEMBL E4Q593Ribonuclease PH
BCaldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)CALS800901UniProtKB/Swiss-Prot RNPH_CALS8Ribonuclease PH
BThermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)THESW02503UniProtKB/TrEMBL I3VYF2Ribonuclease PH TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: txy:Thexy_0742 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2
BThermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P)THEOJ01682UniProtKB/TrEMBL D9RYU3RNAse PH COGs: COG0689 RNase PH; InterPro IPR002381:IPR001247:IPR015847:IPR018336; KEGG: tte:TTE0618 RNase PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3)VEIPT00430UniProtKB/TrEMBL D1BL62ribonuclease PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: azo:azo3963 ribonuclease PH
BIlyobacter polytropus (strain DSM 2926 / CuHBu1)ILYPC01090UniProtKB/TrEMBL E3H7J4ribonuclease PH COGs: COG0689 RNase PH; InterProIPR018336:IPR002381:IPR020568:IPR015847:IPR 001247; KEGG: fnu:FN1851 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C3WCU6 Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
BLeptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249)LEPBD01320UniProtKB/TrEMBL C7NAS8Ribonuclease PH
BSebaldella termitidis (strain ATCC 33386 / NCTC 11300)SEBTE02266UniProtKB/TrEMBL D1AL37ribonuclease PH KEGG: hap:HAPS_1298 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BStreptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901)STRM900565UniProtKB/TrEMBL D1AXP7ribonuclease PH KEGG: hap:HAPS_1298 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BGemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505)GEMAT01568UniProtKB/TrEMBL C1A8Q3ribonuclease PH protein synonym: RNase PH protein synonym: tRNA nucleotidyltransferase
BThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)THEYD01330UniProtKB/Swiss-Prot RNPH_THEYDRibonuclease PH
BPlanctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)PLAL202715UniProtKB/TrEMBL D5SR75
BRhodopirellula baltica (strain SH1)RHOBA06507UniProtKB/Swiss-Prot RNPH_RHOBAribonuclease PH PMID: 1624460 best DB hits: BLAST: swissprot:P28619; RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA; E=2e-60 pir:A44914; tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus; E=4e-60 pir:D82350; ribonuclease PH VC0210 [imported] - Vibrio cholerae; E=7e-60 COG: BS_rph; COG0689 RNase PH; E=2e-61 PA4740; COG1185 Polyribonucleotide nucleotidyltransferase; E=0.001 PFAM: PF01138; 3' exoribonuclease family; E=4.3e-59
BBrevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81)BRESC00210UniProtKB/TrEMBL D9QJ01Ribonuclease PH
BCaulobacter crescentus (strain ATCC 19089 / CB15)CAUCR00151UniProtKB/Swiss-Prot RNPH_CAUCRRibonuclease PH
BCaulobacter crescentus (strain NA1000 / CB15N)CAUCN00151UniProtKB/Swiss-Prot RNPH_CAUCNRibonuclease PH
BCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)CAUST03882UniProtKB/TrEMBL D5VPJ6Ribonuclease PH
BCaulobacter sp. (strain K31)CAUSK00166UniProtKB/Swiss-Prot RNPH_CAUSKRibonuclease PH
BPhenylobacterium zucineum (strain HLK1)PHEZH03456UniProtKB/Swiss-Prot RNPH_PHEZHRibonuclease PH
BMagnetococcus sp. (strain MC-1)MAGSM00050UniProtKB/TrEMBL A0L3N7ribonuclease PH KEGG: bpm:BURPS1710b_3051 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BParvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)PARBH00735UniProtKB/TrEMBL E0TEN0ribonuclease PH pmp logo
BBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)BEII900766UniProtKB/Swiss-Prot RNPH_BEII9Ribonuclease PH
BMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)METSB02102UniProtKB/Swiss-Prot RNPH_METSBRibonuclease PH
BBradyrhizobium japonicum (strain USDA 110)BRAJA00672UniProtKB/Swiss-Prot Q89WK4Ribonuclease PH
BBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)BRASB00176UniProtKB/Swiss-Prot RNPH_BRASBRNase PH
BBradyrhizobium sp. (strain ORS278)BRASO00166UniProtKB/Swiss-Prot RNPH_BRASORNase PH
BNitrobacter hamburgensis (strain X14 / DSM 10229)NITHX00148UniProtKB/Swiss-Prot RNPH_NITHXribonuclease PH
BNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)NITWN00190UniProtKB/Swiss-Prot RNPH_NITWNRNAse PH
BOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)OLICO00407UniProtKB/Swiss-Prot RNPH_OLICORibonuclease PH
BOligotropha carboxidovorans (strain OM4)OLICM00116UniProtKB/TrEMBL F8BPU1ribonuclease PH pmp logo
BRhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)RHOPA00330UniProtKB/Swiss-Prot RNPH_RHOPARibonuclease PH
BRhodopseudomonas palustris (strain BisA53)RHOP500350UniProtKB/TrEMBL Q07US2ribonuclease PH KEGG: rpb:RPB_0425 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BRhodopseudomonas palustris (strain BisB18)RHOPB00321UniProtKB/Swiss-Prot RNPH_RHOPBRNAse PH
BRhodopseudomonas palustris (strain BisB5)RHOPS00390UniProtKB/Swiss-Prot RNPH_RHOPSribonuclease PH
BRhodopseudomonas palustris (strain HaA2)RHOP200424UniProtKB/Swiss-Prot RNPH_RHOP2RNAse PH
BRhodopseudomonas palustris (strain TIE-1)RHOPT00330UniProtKB/Swiss-Prot RNPH_RHOPTRibonuclease PH
BBrucella abortus (strain 2308)BRUA200170UniProtKB/Swiss-Prot RNPH_BRUA23' exoribonuclease:Ribonuclease PH
BBrucella abortus (strain S19)BRUA100154UniProtKB/Swiss-Prot RNPH_BRUA1Ribonuclease PH
BBrucella abortus biovar 1 (strain 9-941)BRUAB00157UniProtKB/Swiss-Prot RNPH_BRUABRph, ribonuclease PH similar to BR0173, ribonuclease PH
BBrucella canis (strain ATCC 23365 / NCTC 10854)BRUC200169UniProtKB/Swiss-Prot RNPH_BRUC2Ribonuclease PH
BBrucella melitensis (strain M5-90)BRUM500181UniProtKB/TrEMBL F2GQD2ribonuclease PH pmp logo
BBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)BRUME01763UniProtKB/Swiss-Prot RNPH_BRUMERibonuclease PH pmp logo
BBrucella melitensis biotype 2 (strain ATCC 23457)BRUMB00160UniProtKB/Swiss-Prot RNPH_BRUMBRibonuclease PH
BBrucella microti (strain CCM 4915)BRUMC00168UniProtKB/TrEMBL C7LFM9Ribonuclease PH pmp logo
BBrucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)BRUO200152UniProtKB/Swiss-Prot RNPH_BRUO2Ribonuclease PH
BBrucella suis biovar 1 (strain 1330)BRUSU00182UniProtKB/Swiss-Prot RNPH_BRUSUribonuclease PH identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966
BBrucella suis (strain ATCC 23445 / NCTC 10510)BRUSI00162UniProtKB/Swiss-Prot RNPH_BRUSIribonuclease PH GO_function: tRNA-specific ribonuclease activity [GO ID 0004549]; GO_process: tRNA processing [GO ID 0008033]
BOchrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)OCHA400181UniProtKB/Swiss-Prot RNPH_OCHA4Ribonuclease PH
BHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)HYPDA03289UniProtKB/TrEMBL D8JXJ9Ribonuclease PH
BPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)PELHB03300UniProtKB/TrEMBL G4R7U4ribonuclease PH
BRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)RHOVT00594UniProtKB/TrEMBL E3HZE5ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: rpb:RPB_0425 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BMethylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1)METEA00296UniProtKB/TrEMBL C5AS34Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1512252, 1512253, 1885537, 1925027, 6207018, 8501045, 88263018, 93015723; Product type e : enzyme pmp logo
BMethylobacterium extorquens (strain CM4 / NCIMB 13688)METC400397UniProtKB/Swiss-Prot RNPH_METC4ribonuclease PH KEGG: mex:Mext_0401 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BMethylobacterium extorquens (strain DSM 5838 / DM4)METED00439UniProtKB/TrEMBL C7C9G1Ribonuclease PH
BMethylobacterium extorquens (strain PA1)METEP00390UniProtKB/Swiss-Prot RNPH_METEPRibonuclease PH
BMethylobacterium nodulans (strain ORS2060 / LMG 21967)METNO04468UniProtKB/Swiss-Prot RNPH_METNORibonuclease PH
BMethylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)METPB00442UniProtKB/Swiss-Prot RNPH_METPBRibonuclease PH
BMethylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)METRJ02885UniProtKB/Swiss-Prot RNPH_METRJRibonuclease PH
BMethylobacterium sp. (strain 4-46)METS403977UniProtKB/Swiss-Prot RNPH_METS4Ribonuclease PH
BChelativorans sp. (strain BNC1)CHESB03976UniProtKB/Swiss-Prot RNPH_CHESBRNAse PH TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; KEGG: bmb:BruAb1_0169 Rph, ribonuclease PH
BMesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)MESCW00762UniProtKB/TrEMBL E8TFQ7
BRhizobium loti (strain MAFF303099)RHILO03549UniProtKB/Swiss-Prot RNPH_RHILOribonuclease PH
BAgrobacterium sp. (strain H13-3)AGRSH00307UniProtKB/TrEMBL F0L547ribonuclease PH RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; RNase PH
BAgrobacterium tumefaciens (strain C58 / ATCC 33970)AGRT500314UniProtKB/Swiss-Prot RNPH_AGRT5Ribonuclease PH
BAgrobacterium radiobacter (strain K84 / ATCC BAA-868)AGRRK00458UniProtKB/Swiss-Prot RNPH_AGRRKRibonuclease PH
BAgrobacterium vitis (strain S4 / ATCC BAA-846)AGRVS00307UniProtKB/Swiss-Prot RNPH_AGRVSRibonuclease PH
BLiberibacter asiaticus (strain psy62)LIBAP00569UniProtKB/TrEMBL C6XFF0Ribonuclease PH
BRhizobium etli (strain CFN 42 / ATCC 51251)RHIEC00348UniProtKB/Swiss-Prot RNPH_RHIECribonuclease PH protein similar to rph (SMc01144) [Sinorhizobium meliloti] and rph (Atu0327) [Agrobacterium tumefaciens str. C58]; Similar to entrez-protein:Q92SK2; Putative location:bacterial cytoplasm Psort-Score: 0.4450; GO_function: GO:0016740 - transferase activity; GO_function: GO:0016779 - nucleotidyltransferase activity; GO_function: GO:0003723 - RNA binding; GO_function: GO:0000175 - 3`-5` exoribonuclease activity; GO_function: GO:0000049 - tRNA binding; GO_function: GO:0004549 - tRNA-specific ribonuclease activity; GO_function: GO:0009022 - tRNA nucleotidyltransferase activity; GO_process: GO:0006396 - RNA processing; GO_process: GO:0008033 - tRNA processing
BRhizobium etli (strain CIAT 652)RHIE600393UniProtKB/Swiss-Prot RNPH_RHIE6Ribonuclease PH protein
BRhizobium leguminosarum bv. trifolii (strain WSM1325)RHILS00006UniProtKB/TrEMBL C6AY94Ribonuclease PH pmp logo
BRhizobium leguminosarum bv. trifolii (strain WSM2304)RHILW00006UniProtKB/Swiss-Prot RNPH_RHILWRibonuclease PH
BRhizobium leguminosarum bv. viciae (strain 3841)RHIL300382UniProtKB/Swiss-Prot RNPH_RHIL3putative ribonuclease similarity:fasta; with=UniProt:RNPH_CAUCR (EMBL:AE005689); Caulobacter crescentus.; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 64.017; 239 aa overlap; query 1-239; subject 1-238 similarity:fasta; with=UniProt:RNPH_AGRT5 (EMBL:AE007971); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rph; Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase).; length=EC 2.7.7.56; id 87.764; 237 aa overlap; query 1-237; subject 1-237
BRhizobium sp. (strain NGR234)RHISN00010UniProtKB/Swiss-Prot RNPH_RHISNRibonuclease PH
BRhizobium meliloti (strain 1021)RHIME00371UniProtKB/Swiss-Prot RNPH_RHIMEProbable ribonuclease PH protein
BSinorhizobium meliloti (strain AK83)SINMK00009UniProtKB/TrEMBL F6DVN8Ribonuclease PH PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: smd:Smed_0010 ribonuclease PH pmp logo
BSinorhizobium medicae (strain WSM419)SINMW00010UniProtKB/Swiss-Prot RNPH_SINMWRibonuclease PH
BParvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)PARL103498UniProtKB/Swiss-Prot RNPH_PARL1Ribonuclease PH
BAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)AZOC504278UniProtKB/Swiss-Prot RNPH_AZOC5Ribonuclease PH
BStarkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)STAND03763UniProtKB/TrEMBL D6ZYY9ribonuclease PH TIGRFAM: ribonuclease PH; KEGG: xau:Xaut_2535 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
BXanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)XANP202463UniProtKB/Swiss-Prot RNPH_XANP2Ribonuclease PH
BHirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418)HIRBI03079UniProtKB/TrEMBL C6XIH4Ribonuclease PH
BHyphomonas neptunium (strain ATCC 15444)HYPNA03248UniProtKB/TrEMBL Q0BX05Ribonuclease PH pmp logo
BMaricaulis maris (strain MCS10)MARMM02988UniProtKB/Swiss-Prot RNPH_MARMMRibonuclease PH
BDinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)DINSH03426UniProtKB/Swiss-Prot RNPH_DINSHRibonuclease PH
BJannaschia sp. (strain CCS1)JANSC00206UniProtKB/TrEMBL Q28VY9RNAse PH pmp logo
BKetogulonicigenium vulgare (strain Y25)KETVY02619UniProtKB/TrEMBL E3F136ribonuclease PH
BParacoccus denitrificans (strain Pd 1222)PARDP00010UniProtKB/TrEMBL A1AXY3ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease pmp logo
BPseudovibrio sp. (strain FO-BEG1)PSEUV00368UniProtKB/TrEMBL G8PK60Ribonuclease PH
BRhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)RHOCB03440UniProtKB/TrEMBL D5ASX5Ribonuclease PH
BRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)RHOS402848UniProtKB/TrEMBL Q3IYI2RNAse PH IMG reference gene:2512956265; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH pmp logo
BRhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)RHOS502540UniProtKB/Swiss-Prot RNPH_RHOS5Ribonuclease PH
BRhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)RHOS102845UniProtKB/Swiss-Prot RNPH_RHOS1ribonuclease PH KEGG: rsp:RSP_1221 ribonuclease PH TIGRFAM: ribonuclease PH PFAM: 3' exoribonuclease
BRhodobacter sphaeroides (strain KD131 / KCTC 12085)RHOSK02597UniProtKB/Swiss-Prot RNPH_RHOSKRibonuclease PH
BRoseobacter denitrificans (strain ATCC 33942 / OCh 114)ROSDO00399UniProtKB/Swiss-Prot RNPH_ROSDOribonuclease PH
BRuegeria sp. (strain TM1040)RUEST02861UniProtKB/Swiss-Prot RNPH_RUESTRNAse PH
BAcetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)ACEP300062UniProtKB/TrEMBL C7JAU4Ribonuclease PH
BAcidiphilium cryptum (strain JF-5)ACICJ01628UniProtKB/TrEMBL A5FZ37Ribonuclease PH pmp logo
BGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)GLUDA01332UniProtKB/TrEMBL A9HF53Putative Ribonuclease PH pmp logo
BGluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693)GLUXN01884ncbi logo BAK84362.1ribonuclease PH
BGluconobacter oxydans (strain 621H)GLUOX01231UniProtKB/TrEMBL Q5FRF3Ribonuclease PH pmp logo
BGranulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)GRABC00025UniProtKB/TrEMBL Q0BW79Ribonuclease PH pmp logo
BAzospirillum lipoferum (strain 4B)AZOL402729UniProtKB/TrEMBL G7Z6X9RNase PH Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1512252, 1885537, 6207018; Product type e : enzyme
BMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)MAGSA04450UniProtKB/TrEMBL Q2VYM3RNase PH pmp logo
BRhodospirillum centenum (strain ATCC 51521 / SW)RHOCS02875UniProtKB/TrEMBL B6IVK4Ribonuclease PH
BRhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)RHORT03630UniProtKB/Swiss-Prot RNPH_RHORTRNAse PH
BMidichloria mitochondrii (strain IricVA)MIDMI00359UniProtKB/TrEMBL F7XVJ7ribonuclease PH
BOrientia tsutsugamushi (strain Boryong)ORITB00211UniProtKB/TrEMBL A5CCD0TRNA nucleotidyltransferase
BOrientia tsutsugamushi (strain Ikeda)ORITI01099UniProtKB/TrEMBL B3CTZ6Ribonuclease PH
BRickettsia africae (strain ESF-5)RICAE00747UniProtKB/Swiss-Prot RNPH_RICAERibonuclease PH
BRickettsia akari (strain Hartford)RICAH00903UniProtKB/Swiss-Prot RNPH_RICAHRibonuclease PH
BRickettsia bellii (strain OSU 85-389)RICB800626UniProtKB/Swiss-Prot RNPH_RICB8Ribonuclease PH
BRickettsia bellii (strain RML369-C)RICBR00593UniProtKB/Swiss-Prot RNPH_RICBRRibonuclease PH
BRickettsia canadensis (strain McKiel)RICCK00312UniProtKB/Swiss-Prot RNPH_RICCKRibonuclease PH
BRickettsia conorii (strain ATCC VR-613 / Malish 7)RICCN00975UniProtKB/Swiss-Prot RNPH_RICCNRibonuclease PH
BRickettsia felis (strain ATCC VR-1525 / URRWXCal2)RICFE00382UniProtKB/Swiss-Prot RNPH_RICFERibonuclease PH
BRickettsia massiliae (strain Mtu5)RICM500694UniProtKB/TrEMBL A8F2B7Ribonuclease PH pmp logo
BRickettsia montanensis (strain OSU 85-930)RICMS00360UniProtKB/TrEMBL H8KC05ribonuclease PH COG0689 RNase PH