List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 301797

RNA polymerase
This group has 11 members: 11 [A]rchaea
Fingerprint: TEKMAVK

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)METS301365  UniProtKB/TrEMBL A5UN03  DNA-directed RNA polymerase subunit F
[A] Methanosphaera stadtmanae (strain DSM 3091)METST01486  UniProtKB/TrEMBL Q2NE43  conserved hypothetical protein COG1460, pfam03874
[A] Methanobacterium thermoautotrophicumMETTH01290  UniProtKB/TrEMBL O27379  Conserved protein
[A] Methanocaldococcus jannaschiiMETJA00038  UniProtKB/Swiss-Prot Y039_METJA  Uncharacterized protein MJ0039
[A] Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)META300055  UniProtKB/TrEMBL A6UT26  RNA polymerase Rpb4
[A] Methanococcus maripaludisMETMP00092  UniProtKB/TrEMBL Q6M126  DNA-directed RNA polymerase subunit F
[A] Methanococcus maripaludis (strain C5 / ATCC BAA-1333)METM501563  UniProtKB/TrEMBL A4G097  RNA polymerase Rpb4
[A] Methanococcus maripaludis (strain C6 / ATCC BAA-1332)METM600845  UniProtKB/TrEMBL A9A8J9  RNA polymerase Rpb4
[A] Methanococcus maripaludis (strain C7 / ATCC BAA-1331)METM701083  UniProtKB/TrEMBL A6VI81  RNA polymerase Rpb4
[A] Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)METVS01072  UniProtKB/TrEMBL A6UR82  RNA polymerase Rpb4
[A] Thermococcus kodakaraensisPYRKO00895  UniProtKB/TrEMBL Q5JI52  DNA-directed RNA polymerase, subunit F