List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 226638

hydrogenase
This group has 12 members: 10 [A]rchaea 2 [B]acteria
Fingerprint: AVMRICG

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[A] Methanosphaera stadtmanae (strain DSM 3091)METST01255  UniProtKB/TrEMBL Q2NES4  FrhA F420-reducing hydrogenase subunit alpha; COG3259, pfam00374
[A] Methanocaldococcus jannaschiiMETJA00028  UniProtKB/Swiss-Prot FRHA_METJA  Coenzyme F420 hydrogenase subunit alpha
[A] Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)META301030  UniProtKB/TrEMBL A6UVV1  Nickel-dependent hydrogenase large subunit
[A] Methanococcus maripaludisMETMP01382  UniProtKB/TrEMBL Q6LXG9  Coenzyme F420-reducing hydrogenase subunit alpha
[A] Methanococcus maripaludis (strain C5 / ATCC BAA-1333)METM500195  UniProtKB/TrEMBL A4FWD7  Nickel-dependent hydrogenase, large subunit
[A] Methanococcus maripaludis (strain C6 / ATCC BAA-1332)METM601277  UniProtKB/TrEMBL A9A9T1  Coenzyme F420 hydrogenase, subunit alpha
[A] Methanococcus maripaludis (strain C7 / ATCC BAA-1331)METM700620  UniProtKB/TrEMBL A6VGW8  Nickel-dependent hydrogenase large subunit
[A] Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)METVS00680  UniProtKB/TrEMBL A6UQ26  Nickel-dependent hydrogenase large subunit
[A] Methanopyrus kandleriMETKA00930  UniProtKB/TrEMBL Q8TWV0  Coenzyme F420-reducing hydrogenase, alpha subunit
[A] Thermococcus onnurineus (strain NA1)THEON01566  UniProtKB/TrEMBL B6YTV8  Coenzyme F420 hydrogenase alpha subunit
[B] Clostridium botulinum (strain Alaska E43 / type E3)CLOBA01517  UniProtKB/TrEMBL B2V1D6  [Ni/Fe] hydrogenase, large subunit
[B] Clostridium botulinum (strain Eklund 17B / type B)CLOBB01934  UniProtKB/TrEMBL B2TM83  [Ni/Fe] hydrogenase, large subunit