List of all proteins in the group
Allows comparison of IDs and descriptions
of all proteins in the OMA Group.
Display an MSA of all sequences in the group.
The MSA is created using the Mafft program.
The jalview applet allows for numerous
display and export options.
Display closely related groups
The close groups are made of the set of all
groups that are linked by at least one pair
of orthologs.
Note that not all pairs of proteins coming
from close groups are orthologous. If that
were the case, the two groups would have
been merged.
Display phyletic profile
The "Phyletic profile" displays OMA groups
that have similar patterns of presence/absence
across species. This can be useful to detect
proteins that have complementary function
(e.g. member of the same metabolic pathway).
Compare GO annotations
This function displays a table of all
Gene Ontology (GO) annotations on
proteins of the OMA group. This
allows to compare the annotations
and serves as an additional description
of this OMA group.
OMA fingerprint
The fingerprint is a subsequence that is specific to a
certain group in the current OMA release
Since the group number is specific to a release, this
is the best way to track a group across releases.
OMA

Keyword Protein Sequence Group Entry

OMA Group 56456

RNA polymerase sigma
This group has 21 members: 21 [B]acteria
Fingerprint: LQDIGRV

Protein List | Alignment | Close Groups | Phyletic Profile | Ontology Download: download fasta, download darwin

[B] Acaryochloris marina (strain MBIC 11017)ACAM101968  UniProtKB/TrEMBL B0BYV8  RNA polymerase sigma-70 factor
[B] Cyanothece (strain ATCC 51142)CYAA501853  UniProtKB/TrEMBL B1X0D4  Group 2 sigma-70 RNA polymerase sigma factor C
[B] Cyanothece sp. (strain PCC 7425 / ATCC 29141)CYAP401537  UniProtKB/TrEMBL B8HRG7  RNA polymerase sigma factor
[B] Microcystis aeruginosa (strain NIES-843)MICAN00859  UniProtKB/TrEMBL B0JRK7  Group 2 RNA polymerase sigma factor
[B] Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)SYNP200262  UniProtKB/TrEMBL B1XMU3  Group 2 sigma factor
[B] Synechococcus sp. (strain CC9311)SYNS302792  UniProtKB/TrEMBL Q0I680  RNA polymerase sigma-70 factor family protein
[B] Synechococcus sp. (strain CC9605)SYNSC02535  UniProtKB/TrEMBL Q3AGF8  possible type II alternative RNA polymerase sigma factor
[B] Synechococcus sp. (strain CC9902)SYNS902214  UniProtKB/TrEMBL Q3AVS8  possible type II alternative RNA polymerase sigma factor
[B] Synechococcus sp. (strain JA-2-3B'a(2-13))SYNJB02616  UniProtKB/TrEMBL Q2JIA4  RNA polymerase sigma-70 factor family identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545
[B] Synechococcus sp. (strain JA-3-3Ab)SYNJA01896  UniProtKB/TrEMBL Q2JT33  RNA polymerase sigma-70 factor family identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545
[B] Synechococcus sp. (strain PCC 6301)SYNP602240  UniProtKB/TrEMBL Q5MZT5  sigC group2 RNA polymerase sigma factor RpoD5
[B] Synechococcus sp. (strain RCC307)SYNR302436  UniProtKB/TrEMBL A5GWT3  Alternative RNA polymerase sigma factor, sigma-70 family
[B] Synechococcus sp. (strain WH7803)SYNPW02456  UniProtKB/TrEMBL A5GPM0  Alternative RNA polymerase sigma factor, sigma-70 family
[B] Synechococcus sp. (strain WH8102)SYNPX02424  UniProtKB/TrEMBL Q7U3K5  RNA polymerase sigma factor
[B] Synechocystis sp. (strain PCC 6803)SYNY302420  UniProtKB/Swiss-Prot RPSC_SYNY3  Probable RNA polymerase sigma-C factor
[B] Anabaena variabilis (strain ATCC 29413 / PCC 7937)ANAVT01150  UniProtKB/TrEMBL Q3MDZ8  Sigma 28 (Flagella/Sporulation)
[B] Anabaena sp. (strain PCC 7120)ANASP01675  UniProtKB/Swiss-Prot RPSC_ANASP  RNA polymerase sigma-C factor
[B] Nostoc punctiforme (strain ATCC 29133 / PCC 73102)NOSP700908  UniProtKB/TrEMBL B2IV51  RNA polymerase, sigma 70 subunit, RpoD family
[B] Trichodesmium erythraeum (strain IMS101)TRIEI01629  UniProtKB/TrEMBL Q113W5  RNA polymerase, sigma 28 subunit
[B] Prochlorococcus marinus (strain MIT 9303)PROM302916  UniProtKB/TrEMBL A2CDX6  Putative type II alternative RNA polymerase sigma factor
[B] Prochlorococcus marinus (strain MIT 9313)PROMM02207  UniProtKB/TrEMBL Q7V3X0  Putative type II alternative RNA polymerase sigma factor